Wall clock time and date at job start Tue Mar 31 2020 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47248 * 299.99976 * 3 2 1 6 6 H 1.48508 * 109.47322 * 59.99780 * 3 2 1 7 7 C 1.37874 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00469 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99582 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46864 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99835 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46829 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47066 * 64.99955 * 12 11 10 14 14 C 1.46903 * 110.99444 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.47631 * 324.99930 * 14 13 12 16 16 C 1.52998 * 109.47083 * 85.00299 * 14 13 12 17 17 C 1.53011 * 109.46963 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47061 * 299.99706 * 17 16 14 19 19 C 1.53007 * 109.47009 * 60.00081 * 18 17 16 20 20 C 1.52998 * 109.46985 * 299.99672 * 19 18 17 21 21 H 1.08996 * 109.47707 * 300.00115 * 20 19 18 22 22 N 1.46502 * 109.46713 * 179.97438 * 20 19 18 23 23 C 1.34942 * 126.03991 * 325.02832 * 22 20 19 24 24 C 1.35316 * 107.74613 * 179.75096 * 23 22 20 25 25 C 1.39870 * 107.92161 * 0.39436 * 24 23 22 26 26 N 1.30836 * 108.20019 * 359.59732 * 25 24 23 27 27 H 0.97006 * 119.99894 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47348 * 59.99882 * 9 7 2 29 29 H 1.09000 * 109.47188 * 299.99400 * 9 7 2 30 30 H 1.08998 * 109.47118 * 59.99885 * 11 10 9 31 31 H 1.08995 * 109.47189 * 299.99445 * 11 10 9 32 32 H 1.09003 * 109.46979 * 304.99315 * 12 11 10 33 33 H 1.08999 * 109.46775 * 185.00443 * 12 11 10 34 34 H 1.00899 * 111.00004 * 303.94841 * 13 12 11 35 35 H 1.09000 * 109.46996 * 299.99457 * 16 14 13 36 36 H 1.08998 * 109.47608 * 60.00002 * 16 14 13 37 37 H 1.08998 * 109.46732 * 59.99740 * 17 16 14 38 38 H 1.09005 * 109.46784 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47473 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.47509 * 300.00165 * 18 17 16 41 41 H 1.09000 * 109.47013 * 180.02562 * 19 18 17 42 42 H 1.08996 * 109.46992 * 60.00224 * 19 18 17 43 43 H 1.08002 * 126.12737 * 359.97438 * 23 22 20 44 44 H 1.07998 * 126.04386 * 180.27449 * 24 23 22 45 45 H 1.08002 * 125.90382 * 179.86983 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5852 0.0017 11 6 1.5650 -4.8754 0.0024 12 6 2.6481 -5.9562 0.0043 13 7 3.4071 -5.8865 1.2601 14 6 4.4578 -6.9125 1.2976 15 1 4.1052 -7.8124 0.7936 16 6 5.7083 -6.3879 0.5892 17 6 6.8029 -7.4564 0.6288 18 6 7.1415 -7.7858 2.0840 19 6 5.8909 -8.3104 2.7925 20 6 4.7964 -7.2420 2.7529 21 1 5.1488 -6.3419 3.2566 22 7 3.5988 -7.7445 3.4307 23 6 3.1614 -9.0211 3.4274 24 6 2.0318 -9.0720 4.1706 25 6 1.7649 -7.7806 4.6370 26 7 2.7055 -6.9847 4.1969 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 0.9453 -4.9831 -0.8877 31 1 0.9446 -4.9818 0.8922 32 1 3.3223 -5.7964 -0.8372 33 1 2.1821 -6.9375 -0.0848 34 1 3.7956 -4.9655 1.3972 35 1 5.4670 -6.1529 -0.4474 36 1 6.0610 -5.4882 1.0933 37 1 6.4504 -8.3564 0.1251 38 1 7.6937 -7.0828 0.1237 39 1 7.9216 -8.5466 2.1123 40 1 7.4939 -6.8858 2.5879 41 1 6.1320 -8.5447 3.8293 42 1 5.5386 -9.2104 2.2887 43 1 3.6310 -9.8538 2.9248 44 1 1.4397 -9.9535 4.3673 45 1 0.9294 -7.4913 5.2572 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339090615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:49 Heat of formation + Delta-G solvation = -6.405796 kcal Electronic energy + Delta-G solvation = -23913.374540 eV Core-core repulsion = 20544.922076 eV Total energy + Delta-G solvation = -3368.452464 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04919 -39.90318 -38.68847 -36.03218 -34.85487 -33.84312 -31.60454 -30.78222 -29.95432 -29.18494 -27.61074 -24.57645 -24.18794 -23.37571 -22.59312 -21.99009 -21.45125 -20.38360 -18.69783 -18.23463 -17.54559 -17.05209 -16.62133 -16.43799 -15.88906 -15.78599 -15.42780 -15.12780 -15.07900 -14.73033 -14.38348 -14.12125 -13.96169 -13.69797 -13.47132 -13.41009 -13.25808 -13.15373 -12.73787 -12.68148 -12.39090 -12.23973 -12.19695 -11.94381 -11.79171 -11.53213 -11.34131 -11.32302 -11.30496 -10.91407 -10.29350 -10.19262 -9.42215 -9.18288 -8.34994 -6.48017 1.20592 1.37496 1.39698 1.54030 1.76963 2.11910 2.32128 2.98675 2.99050 3.15841 3.62429 3.74851 3.83719 4.00919 4.05821 4.08990 4.18315 4.21171 4.25429 4.29384 4.38077 4.44266 4.48963 4.66369 4.72651 4.76253 4.81569 4.87218 4.92301 4.93076 5.04164 5.08699 5.13016 5.13746 5.22399 5.27986 5.28111 5.43495 5.51328 5.91006 5.91657 6.06942 6.28757 6.41670 6.48347 6.76663 7.01495 7.23952 8.77904 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.003597 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.241290 B = 7781.564751 C = 8671.113303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.212 3.788 10 O -0.405 6.405 11 C 0.059 3.941 12 C 0.084 3.916 13 N -0.687 5.687 14 C 0.084 3.916 15 H 0.088 0.912 16 C -0.145 4.145 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.117 4.117 20 C 0.171 3.829 21 H 0.077 0.923 22 N -0.349 5.349 23 C 0.048 3.952 24 C -0.288 4.288 25 C 0.015 3.985 26 N -0.324 5.324 27 H 0.271 0.729 28 H -0.015 1.015 29 H -0.021 1.021 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.093 0.907 34 H 0.341 0.659 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.201 0.799 44 H 0.162 0.838 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.484 -23.078 4.027 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.137 3.863 10 O -0.325 6.325 11 C -0.019 4.019 12 C -0.045 4.045 13 N -0.317 5.317 14 C -0.027 4.027 15 H 0.106 0.894 16 C -0.185 4.185 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.156 4.156 20 C 0.068 3.932 21 H 0.095 0.905 22 N -0.131 5.131 23 C -0.098 4.098 24 C -0.318 4.318 25 C -0.170 4.170 26 N -0.145 5.145 27 H 0.080 0.920 28 H 0.003 0.997 29 H -0.003 1.003 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.160 0.840 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.218 0.782 44 H 0.180 0.820 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 13.606 -22.061 4.296 26.273 hybrid contribution -0.504 0.724 -0.543 1.036 sum 13.102 -21.337 3.753 25.318 Atomic orbital electron populations 1.70088 1.07874 1.28641 1.50472 1.26000 0.95967 1.03515 0.93818 0.85104 0.78646 0.77125 0.78309 1.18701 1.19446 1.19736 1.21391 0.94074 0.90691 1.52288 0.91904 1.19783 0.88590 0.84758 0.93131 1.87743 1.35408 1.14214 1.95156 1.22530 0.96121 0.84153 0.99060 1.21818 0.94689 0.97017 0.90965 1.60485 1.27622 1.08641 1.34949 1.21999 0.90596 0.95694 0.94369 0.89389 1.22236 0.95919 0.99727 1.00579 1.21514 0.97888 0.98411 0.97194 1.21504 0.96490 1.02043 0.94882 1.21898 0.93716 0.97350 1.02590 1.21428 0.81619 0.98633 0.91487 0.90492 1.48732 1.20400 1.05647 1.38293 1.22961 0.97120 0.88871 1.00896 1.21738 1.01985 0.98760 1.09304 1.24215 0.98892 0.92914 1.01005 1.77440 1.03872 1.20960 1.12245 0.92008 0.99704 1.00330 0.93461 0.95100 0.94273 0.88867 0.84036 0.91983 0.92428 0.90450 0.90718 0.88752 0.92048 0.90464 0.89013 0.78197 0.82003 0.79643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.99 45.37 29.54 68.60 2.03 47.40 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -33.57 9.43 25.60 0.24 -33.33 16 8 H 0.06 3.80 7.81 -2.91 -0.02 3.77 16 9 C 0.21 12.53 5.69 71.24 0.41 12.94 16 10 O -0.41 -20.60 9.85 -148.98 -1.47 -22.07 16 11 C 0.06 2.37 6.28 71.98 0.45 2.82 16 12 C 0.08 2.61 5.90 86.31 0.51 3.12 16 13 N -0.69 -21.25 6.08 -491.56 -2.99 -24.24 16 14 C 0.08 1.84 2.13 44.92 0.10 1.93 16 15 H 0.09 1.74 7.80 -2.39 -0.02 1.72 16 16 C -0.14 -2.75 5.17 30.60 0.16 -2.59 16 17 C -0.11 -1.35 5.92 30.60 0.18 -1.17 16 18 C -0.11 -1.16 5.92 30.60 0.18 -0.98 16 19 C -0.12 -1.44 4.85 30.60 0.15 -1.30 16 20 C 0.17 3.59 2.86 44.99 0.13 3.72 16 21 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 22 N -0.35 -8.76 3.36 -327.49 -1.10 -9.86 16 23 C 0.05 0.95 10.59 83.54 0.88 1.83 16 24 C -0.29 -6.22 10.80 21.99 0.24 -5.98 16 25 C 0.02 0.41 12.03 85.24 1.03 1.43 16 26 N -0.32 -10.51 12.58 -57.02 -0.72 -11.23 16 27 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 28 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.17 7.44 -2.39 -0.02 1.15 16 33 H 0.09 2.47 8.05 -2.39 -0.02 2.46 16 34 H 0.34 12.32 8.03 -89.69 -0.72 11.60 16 35 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 36 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 0.80 7.15 -2.39 -0.02 0.78 16 43 H 0.20 2.20 7.26 -2.91 -0.02 2.18 16 44 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 45 H 0.19 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -74.65 364.02 1.38 -73.27 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.23 Total: 20.84 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 5.11 Total: -16.77 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -4.52 Total: -102.66 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.47 Total: -22.07 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.65 1.38 -73.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339090615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.862 kcal (2) G-P(sol) polarization free energy of solvation -74.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds