Wall clock time and date at job start Tue Mar 31 2020 07:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00470 * 2 1 4 4 H 1.48502 * 109.47081 * 270.00303 * 3 2 1 5 5 H 1.48508 * 109.46758 * 30.00105 * 3 2 1 6 6 H 1.48493 * 109.47223 * 149.99645 * 3 2 1 7 7 C 1.37879 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99598 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00064 * 180.02562 * 7 2 1 10 10 O 1.42904 * 109.47143 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99915 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46976 * 180.02562 * 11 10 9 13 13 N 1.46891 * 109.47262 * 64.99872 * 12 11 10 14 14 C 1.46900 * 111.00034 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.47384 * 325.00644 * 14 13 12 16 16 C 1.53004 * 109.47109 * 85.00017 * 14 13 12 17 17 C 1.52994 * 109.47354 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47299 * 300.00112 * 17 16 14 19 19 C 1.53004 * 109.47002 * 60.00073 * 18 17 16 20 20 C 1.53001 * 109.47277 * 204.99966 * 14 13 12 21 21 H 1.09000 * 109.46951 * 60.00183 * 20 14 13 22 22 N 1.46505 * 109.47340 * 300.00223 * 20 14 13 23 23 C 1.34939 * 126.03694 * 204.52003 * 22 20 14 24 24 C 1.35319 * 107.74491 * 179.97438 * 23 22 20 25 25 C 1.39862 * 107.91937 * 359.97438 * 24 23 22 26 26 N 1.30839 * 108.20305 * 359.73890 * 25 24 23 27 27 H 0.97006 * 119.99293 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47582 * 59.99584 * 9 7 2 29 29 H 1.09008 * 109.46977 * 299.99526 * 9 7 2 30 30 H 1.09005 * 109.47073 * 59.99890 * 11 10 9 31 31 H 1.08997 * 109.46822 * 300.00061 * 11 10 9 32 32 H 1.09008 * 109.47020 * 304.99849 * 12 11 10 33 33 H 1.09001 * 109.47061 * 185.00671 * 12 11 10 34 34 H 1.00904 * 111.00326 * 56.04777 * 13 12 11 35 35 H 1.08992 * 109.47352 * 300.00486 * 16 14 13 36 36 H 1.09004 * 109.46979 * 60.00027 * 16 14 13 37 37 H 1.09004 * 109.46912 * 60.00162 * 17 16 14 38 38 H 1.09000 * 109.47226 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47253 * 179.97438 * 18 17 16 40 40 H 1.08996 * 109.47313 * 299.99591 * 18 17 16 41 41 H 1.09002 * 109.47150 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.47307 * 59.99890 * 19 18 17 43 43 H 1.08006 * 126.12923 * 359.95171 * 23 22 20 44 44 H 1.08002 * 126.03514 * 179.97438 * 24 23 22 45 45 H 1.08001 * 125.89958 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.4123 -2.6544 -0.0001 12 6 5.8067 -4.1326 -0.0009 13 7 5.3674 -4.7560 -1.2563 14 6 5.7305 -6.1789 -1.2928 15 1 6.6859 -6.3232 -0.7883 16 6 4.6507 -6.9992 -0.5842 17 6 5.0285 -8.4812 -0.6228 18 6 5.1450 -8.9402 -2.0777 19 6 6.2250 -8.1201 -2.7862 20 6 5.8475 -6.6383 -2.7476 21 1 6.6168 -6.0540 -3.2523 22 7 4.5634 -6.4445 -3.4257 23 6 4.1286 -7.1193 -4.5103 24 6 2.9006 -6.6461 -4.8255 25 6 2.5737 -5.6484 -3.9016 26 7 3.5672 -5.5308 -3.0584 27 1 -0.4849 0.8402 0.0004 28 1 3.8745 -0.6809 0.8905 29 1 3.8751 -0.6798 -0.8896 30 1 5.8151 -2.1709 0.8899 31 1 5.8150 -2.1708 -0.8901 32 1 5.3308 -4.6361 0.8407 33 1 6.8895 -4.2198 0.0888 34 1 5.7440 -4.2665 -2.0543 35 1 4.5673 -6.6719 0.4520 36 1 3.6953 -6.8549 -1.0888 37 1 5.9840 -8.6258 -0.1185 38 1 4.2590 -9.0656 -0.1184 39 1 5.4146 -9.9960 -2.1051 40 1 4.1896 -8.7957 -2.5819 41 1 6.3077 -8.4467 -3.8228 42 1 7.1805 -8.2646 -2.2819 43 1 4.6647 -7.8975 -5.0334 44 1 2.2824 -6.9800 -5.6457 45 1 1.6573 -5.0772 -3.8841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339090624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:53 Heat of formation + Delta-G solvation = 38.687341 kcal Electronic energy + Delta-G solvation = -24420.727766 eV Core-core repulsion = 21054.230687 eV Total energy + Delta-G solvation = -3366.497079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24504 -38.67843 -36.93209 -34.83458 -32.65901 -32.49818 -30.62881 -29.56146 -29.10464 -27.83586 -26.36318 -23.41456 -22.33684 -21.70612 -21.31982 -20.99486 -20.44692 -19.30185 -16.89387 -16.67963 -16.33513 -15.70662 -15.34230 -15.06594 -14.64913 -14.36667 -14.21707 -13.89842 -13.71755 -13.47498 -13.15564 -12.95276 -12.61738 -12.51969 -12.32566 -12.24646 -12.09593 -12.01796 -11.49869 -11.34247 -10.87869 -10.80431 -10.65394 -10.59645 -10.40153 -10.25908 -9.93895 -9.76797 -9.04660 -9.04203 -8.70859 -8.32148 -8.31193 -7.97368 -6.00717 -3.97895 2.20577 2.68542 3.21606 3.31321 3.37599 3.39597 4.03948 4.23309 4.44572 4.49354 4.65208 4.77538 4.82783 4.91731 5.01834 5.03622 5.21125 5.24210 5.30620 5.33952 5.40517 5.50018 5.54485 5.66335 5.69635 5.82274 5.83623 5.93351 5.96104 6.01964 6.03857 6.04353 6.20804 6.27860 6.31791 6.56058 6.72258 7.00907 7.12363 7.20699 7.34018 7.65483 7.72614 8.13748 8.19336 8.82047 9.14536 9.59753 11.12683 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.003980 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.464649 B = 7032.844662 C = 7793.880779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.358 6.358 11 C 0.064 3.936 12 C 0.066 3.934 13 N -0.645 5.645 14 C 0.095 3.905 15 H 0.049 0.951 16 C -0.109 4.109 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.128 4.128 20 C 0.162 3.838 21 H 0.080 0.920 22 N -0.365 5.365 23 C 0.034 3.966 24 C -0.274 4.274 25 C 0.025 3.975 26 N -0.220 5.220 27 H 0.265 0.735 28 H -0.003 1.003 29 H -0.005 1.005 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.337 0.663 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.160 0.840 44 H 0.138 0.862 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.804 -18.465 -7.189 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.102 0.898 9 C 0.092 3.908 10 O -0.277 6.277 11 C -0.014 4.014 12 C -0.064 4.064 13 N -0.277 5.277 14 C -0.016 4.016 15 H 0.067 0.933 16 C -0.147 4.147 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.167 4.167 20 C 0.059 3.941 21 H 0.098 0.902 22 N -0.149 5.149 23 C -0.111 4.111 24 C -0.304 4.304 25 C -0.162 4.162 26 N -0.040 5.040 27 H 0.075 0.925 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.156 0.844 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.178 0.822 44 H 0.156 0.844 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 15.461 -18.001 -5.855 24.440 hybrid contribution 1.238 0.841 -1.030 1.817 sum 16.699 -17.160 -6.884 24.914 Atomic orbital electron populations 1.69886 1.06007 1.26824 1.50995 1.24757 0.94758 0.98572 0.94924 0.86878 0.80325 0.84020 0.78652 1.20046 1.20918 1.19257 1.20906 0.88334 0.95260 1.50240 0.89846 1.20564 0.96226 0.80136 0.93828 1.88063 1.16495 1.28349 1.94783 1.22259 0.85991 0.94650 0.98531 1.22030 0.95712 0.94862 0.93753 1.60233 1.64143 0.99880 1.03425 1.21617 0.97199 0.90467 0.92303 0.93302 1.21561 0.99965 0.92173 1.01010 1.21578 1.01366 0.96938 0.95959 1.21556 0.99163 0.98772 0.96372 1.21913 1.00132 0.92882 1.01767 1.21426 0.81928 0.97032 0.93699 0.90213 1.48813 1.14686 1.29330 1.22057 1.22279 0.96901 0.99702 0.92236 1.21446 0.98224 1.04756 1.06012 1.24131 0.99283 0.98753 0.94058 1.78140 0.96593 1.09086 1.20154 0.92547 0.98491 0.98758 0.94391 0.94936 0.90382 0.95363 0.84409 0.91700 0.89832 0.92339 0.91762 0.91783 0.91323 0.90995 0.89758 0.82233 0.84368 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.54 13.96 55.43 0.77 -27.77 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.51 -15.78 9.99 -34.44 -0.34 -16.13 16 8 H 0.08 2.85 8.06 -52.48 -0.42 2.42 16 9 C 0.17 4.49 4.76 36.00 0.17 4.66 16 10 O -0.36 -8.83 10.27 -35.23 -0.36 -9.19 16 11 C 0.06 1.17 6.22 37.16 0.23 1.40 16 12 C 0.07 0.98 5.87 -3.83 -0.02 0.95 16 13 N -0.65 -9.67 4.65 -106.73 -0.50 -10.17 16 14 C 0.09 1.11 2.10 -67.71 -0.14 0.97 16 15 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 16 C -0.11 -1.40 5.23 -26.73 -0.14 -1.54 16 17 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 18 C -0.12 -1.02 5.72 -26.73 -0.15 -1.17 16 19 C -0.13 -0.93 5.07 -26.75 -0.14 -1.07 16 20 C 0.16 1.64 2.97 -67.95 -0.20 1.44 16 21 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 22 N -0.37 -4.63 2.89 -54.88 -0.16 -4.79 16 23 C 0.03 0.38 9.44 -17.23 -0.16 0.22 16 24 C -0.27 -3.42 10.80 -40.01 -0.43 -3.85 16 25 C 0.03 0.39 12.03 -17.37 -0.21 0.18 16 26 N -0.22 -3.69 9.28 30.62 0.28 -3.41 16 27 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 28 H 0.00 -0.07 7.20 -51.93 -0.37 -0.44 16 29 H -0.01 -0.14 7.57 -51.92 -0.39 -0.53 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.23 7.44 -51.92 -0.39 0.85 16 33 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 34 H 0.34 5.02 8.34 -39.29 -0.33 4.70 16 35 H 0.06 0.90 7.45 -51.93 -0.39 0.52 16 36 H 0.08 1.35 6.52 -51.93 -0.34 1.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.71 6.64 -51.93 -0.34 0.36 16 41 H 0.07 0.43 7.16 -51.93 -0.37 0.06 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.16 1.23 7.27 -52.48 -0.38 0.85 16 44 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.18 2.62 8.06 -52.49 -0.42 2.19 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -34.76 351.76 -8.64 -43.40 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.52 Total: 2.32 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.80 Total: -13.19 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.40 Total: -46.13 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.36 Total: -9.19 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.76 -8.64 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339090624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.091 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds