Wall clock time and date at job start Tue Mar 31 2020 07:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00470 * 2 1 4 4 H 1.48502 * 109.47081 * 270.00303 * 3 2 1 5 5 H 1.48508 * 109.46758 * 30.00105 * 3 2 1 6 6 H 1.48493 * 109.47223 * 149.99645 * 3 2 1 7 7 C 1.37879 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99598 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00064 * 180.02562 * 7 2 1 10 10 O 1.42904 * 109.47143 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99915 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46976 * 180.02562 * 11 10 9 13 13 N 1.46891 * 109.47262 * 64.99872 * 12 11 10 14 14 C 1.46900 * 111.00034 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.47384 * 325.00644 * 14 13 12 16 16 C 1.53004 * 109.47109 * 85.00017 * 14 13 12 17 17 C 1.52994 * 109.47354 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47299 * 300.00112 * 17 16 14 19 19 C 1.53004 * 109.47002 * 60.00073 * 18 17 16 20 20 C 1.53001 * 109.47277 * 204.99966 * 14 13 12 21 21 H 1.09000 * 109.46951 * 60.00183 * 20 14 13 22 22 N 1.46505 * 109.47340 * 300.00223 * 20 14 13 23 23 C 1.34939 * 126.03694 * 204.52003 * 22 20 14 24 24 C 1.35319 * 107.74491 * 179.97438 * 23 22 20 25 25 C 1.39862 * 107.91937 * 359.97438 * 24 23 22 26 26 N 1.30839 * 108.20305 * 359.73890 * 25 24 23 27 27 H 0.97006 * 119.99293 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47582 * 59.99584 * 9 7 2 29 29 H 1.09008 * 109.46977 * 299.99526 * 9 7 2 30 30 H 1.09005 * 109.47073 * 59.99890 * 11 10 9 31 31 H 1.08997 * 109.46822 * 300.00061 * 11 10 9 32 32 H 1.09008 * 109.47020 * 304.99849 * 12 11 10 33 33 H 1.09001 * 109.47061 * 185.00671 * 12 11 10 34 34 H 1.00904 * 111.00326 * 56.04777 * 13 12 11 35 35 H 1.08992 * 109.47352 * 300.00486 * 16 14 13 36 36 H 1.09004 * 109.46979 * 60.00027 * 16 14 13 37 37 H 1.09004 * 109.46912 * 60.00162 * 17 16 14 38 38 H 1.09000 * 109.47226 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47253 * 179.97438 * 18 17 16 40 40 H 1.08996 * 109.47313 * 299.99591 * 18 17 16 41 41 H 1.09002 * 109.47150 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.47307 * 59.99890 * 19 18 17 43 43 H 1.08006 * 126.12923 * 359.95171 * 23 22 20 44 44 H 1.08002 * 126.03514 * 179.97438 * 24 23 22 45 45 H 1.08001 * 125.89958 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.4123 -2.6544 -0.0001 12 6 5.8067 -4.1326 -0.0009 13 7 5.3674 -4.7560 -1.2563 14 6 5.7305 -6.1789 -1.2928 15 1 6.6859 -6.3232 -0.7883 16 6 4.6507 -6.9992 -0.5842 17 6 5.0285 -8.4812 -0.6228 18 6 5.1450 -8.9402 -2.0777 19 6 6.2250 -8.1201 -2.7862 20 6 5.8475 -6.6383 -2.7476 21 1 6.6168 -6.0540 -3.2523 22 7 4.5634 -6.4445 -3.4257 23 6 4.1286 -7.1193 -4.5103 24 6 2.9006 -6.6461 -4.8255 25 6 2.5737 -5.6484 -3.9016 26 7 3.5672 -5.5308 -3.0584 27 1 -0.4849 0.8402 0.0004 28 1 3.8745 -0.6809 0.8905 29 1 3.8751 -0.6798 -0.8896 30 1 5.8151 -2.1709 0.8899 31 1 5.8150 -2.1708 -0.8901 32 1 5.3308 -4.6361 0.8407 33 1 6.8895 -4.2198 0.0888 34 1 5.7440 -4.2665 -2.0543 35 1 4.5673 -6.6719 0.4520 36 1 3.6953 -6.8549 -1.0888 37 1 5.9840 -8.6258 -0.1185 38 1 4.2590 -9.0656 -0.1184 39 1 5.4146 -9.9960 -2.1051 40 1 4.1896 -8.7957 -2.5819 41 1 6.3077 -8.4467 -3.8228 42 1 7.1805 -8.2646 -2.2819 43 1 4.6647 -7.8975 -5.0334 44 1 2.2824 -6.9800 -5.6457 45 1 1.6573 -5.0772 -3.8841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339090624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:52 Heat of formation + Delta-G solvation = 14.189272 kcal Electronic energy + Delta-G solvation = -24421.790082 eV Core-core repulsion = 21054.230687 eV Total energy + Delta-G solvation = -3367.559395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19646 -39.63631 -38.60522 -36.03145 -34.78469 -33.54963 -31.79362 -30.56911 -30.31280 -29.55527 -27.67323 -24.27046 -23.95615 -23.37728 -22.36219 -21.99771 -21.42894 -20.19275 -19.05057 -17.73998 -17.46151 -17.21716 -16.68684 -16.51635 -15.95288 -15.65897 -15.46340 -14.99692 -14.73288 -14.65001 -14.48322 -14.34898 -14.16307 -13.53019 -13.46772 -13.31498 -13.18863 -13.14780 -12.89087 -12.77606 -12.48175 -12.19149 -12.01513 -11.81068 -11.52010 -11.36828 -11.30101 -11.28373 -10.95272 -10.89411 -10.27644 -10.08103 -9.28183 -9.02282 -8.36388 -6.43529 1.25506 1.30626 1.34862 1.45612 1.81724 2.12957 2.29216 2.95707 3.08068 3.20180 3.41318 3.75097 3.88430 4.04931 4.14527 4.17400 4.20259 4.26988 4.34137 4.43183 4.44553 4.47453 4.54026 4.58128 4.65077 4.70143 4.83148 4.87901 4.95257 4.98098 5.05149 5.08376 5.16200 5.19368 5.25621 5.28835 5.35188 5.45716 5.53324 5.92246 5.97112 6.24041 6.43325 6.57211 6.60888 6.85139 7.08287 7.21075 8.81497 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.003980 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.464649 B = 7032.844662 C = 7793.880779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.540 4.540 8 H 0.023 0.977 9 C 0.181 3.819 10 O -0.391 6.391 11 C 0.054 3.946 12 C 0.074 3.926 13 N -0.673 5.673 14 C 0.097 3.903 15 H 0.077 0.923 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.119 4.119 20 C 0.154 3.846 21 H 0.097 0.903 22 N -0.360 5.360 23 C 0.050 3.950 24 C -0.286 4.286 25 C -0.006 4.006 26 N -0.273 5.273 27 H 0.273 0.727 28 H 0.009 0.991 29 H 0.004 0.996 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.336 0.664 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.205 0.795 44 H 0.157 0.843 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.061 -19.027 -8.086 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.170 1.170 7 C -0.578 4.578 8 H 0.042 0.958 9 C 0.105 3.895 10 O -0.310 6.310 11 C -0.023 4.023 12 C -0.055 4.055 13 N -0.306 5.306 14 C -0.013 4.013 15 H 0.095 0.905 16 C -0.145 4.145 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.158 4.158 20 C 0.053 3.947 21 H 0.115 0.885 22 N -0.143 5.143 23 C -0.096 4.096 24 C -0.316 4.316 25 C -0.192 4.192 26 N -0.093 5.093 27 H 0.082 0.918 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.221 0.779 44 H 0.175 0.825 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 19.729 -18.589 -6.745 27.934 hybrid contribution -0.141 0.883 -0.716 1.146 sum 19.588 -17.706 -7.461 27.439 Atomic orbital electron populations 1.70051 1.08295 1.28687 1.51367 1.25863 0.95816 1.03391 0.93480 0.85574 0.79393 0.77400 0.79705 1.18525 1.19541 1.16971 1.21143 0.91080 0.93610 1.51971 0.95808 1.20246 0.93261 0.81572 0.94395 1.88024 1.20814 1.27150 1.95022 1.22657 0.82436 0.97520 0.99714 1.21941 0.97787 0.92350 0.93384 1.60122 1.65487 1.01731 1.03214 1.21659 0.97490 0.88250 0.93896 0.90545 1.21493 0.98792 0.95109 0.99122 1.21544 1.02112 0.94071 0.97566 1.21531 0.98652 1.00454 0.94918 1.21967 1.00509 0.89859 1.03462 1.21790 0.81012 0.99630 0.92294 0.88489 1.48999 1.14678 1.28334 1.22315 1.22886 0.96295 0.99302 0.91139 1.21686 0.99417 1.04293 1.06204 1.24195 0.99234 1.00273 0.95512 1.78040 0.98158 1.11583 1.21556 0.91843 0.97357 0.97881 0.92741 0.93886 0.92035 0.91158 0.84519 0.94063 0.94104 0.90043 0.92614 0.89346 0.93775 0.88591 0.86997 0.77869 0.82513 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.20 13.96 21.45 0.30 -61.90 16 2 C 0.01 0.74 5.47 84.66 0.46 1.21 16 3 Si 0.96 45.61 27.47 68.60 1.88 47.50 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.54 -35.23 9.99 25.60 0.26 -34.97 16 8 H 0.02 1.76 8.06 -2.91 -0.02 1.74 16 9 C 0.18 9.82 4.76 71.23 0.34 10.16 16 10 O -0.39 -19.91 10.27 -148.98 -1.53 -21.45 16 11 C 0.05 1.94 6.22 71.98 0.45 2.39 16 12 C 0.07 2.15 5.87 86.30 0.51 2.66 16 13 N -0.67 -20.17 4.65 -491.57 -2.29 -22.46 16 14 C 0.10 2.14 2.10 44.92 0.09 2.23 16 15 H 0.08 1.29 7.80 -2.39 -0.02 1.27 16 16 C -0.11 -2.81 5.23 30.59 0.16 -2.65 16 17 C -0.11 -2.04 5.92 30.59 0.18 -1.86 16 18 C -0.12 -1.64 5.72 30.60 0.18 -1.46 16 19 C -0.12 -1.19 5.07 30.58 0.15 -1.03 16 20 C 0.15 2.72 2.97 44.98 0.13 2.85 16 21 H 0.10 1.43 8.12 -2.39 -0.02 1.41 16 22 N -0.36 -8.87 2.89 -327.55 -0.95 -9.81 16 23 C 0.05 1.02 9.44 83.54 0.79 1.81 16 24 C -0.29 -7.20 10.80 21.99 0.24 -6.97 16 25 C -0.01 -0.20 12.03 85.23 1.02 0.82 16 26 N -0.27 -9.72 9.28 -57.03 -0.53 -10.25 16 27 H 0.27 16.39 8.31 -92.70 -0.77 15.62 16 28 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 29 H 0.00 0.18 7.57 -2.38 -0.02 0.16 16 30 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.97 7.44 -2.38 -0.02 1.95 16 33 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 34 H 0.34 9.89 8.34 -89.69 -0.75 9.14 16 35 H 0.04 1.22 7.45 -2.39 -0.02 1.21 16 36 H 0.04 1.43 6.52 -2.38 -0.02 1.41 16 37 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.04 0.84 6.64 -2.39 -0.02 0.83 16 41 H 0.10 0.58 7.16 -2.39 -0.02 0.56 16 42 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.20 2.23 7.27 -2.91 -0.02 2.21 16 44 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.16 5.60 8.06 -2.91 -0.02 5.57 16 Total: -1.00 -83.17 351.76 2.02 -81.16 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.16 Total: 22.04 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 4.96 Total: -24.83 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -3.46 Total: -104.42 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.53 Total: -21.45 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.50 kcal Total: -83.17 2.02 -81.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339090624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.348 kcal (2) G-P(sol) polarization free energy of solvation -83.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds