Wall clock time and date at job start Tue Mar 31 2020 07:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99965 * 2 1 4 4 H 1.48499 * 109.47227 * 269.99955 * 3 2 1 5 5 H 1.48509 * 109.46931 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47101 * 149.99485 * 3 2 1 7 7 C 1.37875 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99957 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99731 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00252 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47388 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46994 * 65.00397 * 12 11 10 14 14 C 1.46894 * 111.00270 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47104 * 34.99612 * 14 13 12 16 16 C 1.52999 * 109.46927 * 275.00239 * 14 13 12 17 17 C 1.53005 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 14 19 19 C 1.53002 * 109.46817 * 300.00239 * 18 17 16 20 20 C 1.52997 * 109.47515 * 154.99879 * 14 13 12 21 21 H 1.09002 * 109.47153 * 59.99762 * 20 14 13 22 22 N 1.46500 * 109.47007 * 299.99851 * 20 14 13 23 23 C 1.34943 * 126.03641 * 275.00049 * 22 20 14 24 24 C 1.35318 * 107.74674 * 179.97438 * 23 22 20 25 25 C 1.39874 * 107.91737 * 0.02562 * 24 23 22 26 26 N 1.30835 * 108.20497 * 359.73670 * 25 24 23 27 27 H 0.96994 * 119.99681 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47265 * 59.99881 * 9 7 2 29 29 H 1.08995 * 109.47273 * 299.99811 * 9 7 2 30 30 H 1.09001 * 109.46868 * 60.00429 * 11 10 9 31 31 H 1.09001 * 109.47385 * 300.00659 * 11 10 9 32 32 H 1.09000 * 109.47032 * 305.00654 * 12 11 10 33 33 H 1.08998 * 109.47074 * 185.00185 * 12 11 10 34 34 H 1.00907 * 110.99514 * 303.95478 * 13 12 11 35 35 H 1.09002 * 109.46716 * 299.99610 * 16 14 13 36 36 H 1.09000 * 109.47486 * 59.99528 * 16 14 13 37 37 H 1.09001 * 109.46812 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.46935 * 299.99411 * 17 16 14 39 39 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 40 40 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 41 41 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 42 42 H 1.09004 * 109.46733 * 179.97438 * 19 18 17 43 43 H 1.08000 * 126.13092 * 359.97438 * 23 22 20 44 44 H 1.08001 * 126.04433 * 179.97438 * 24 23 22 45 45 H 1.07997 * 125.89476 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0022 11 6 5.4124 -2.6541 0.0022 12 6 5.8070 -4.1324 0.0028 13 7 5.3678 -4.7569 -1.2523 14 6 5.7299 -6.1801 -1.2871 15 1 5.6525 -6.5993 -0.2839 16 6 7.1664 -6.3285 -1.7924 17 6 7.5434 -7.8110 -1.8293 18 6 6.5928 -8.5558 -2.7686 19 6 5.1563 -8.4073 -2.2632 20 6 4.7794 -6.9254 -2.2261 21 1 4.8567 -6.5062 -3.2293 22 7 3.4039 -6.7832 -1.7422 23 6 2.8065 -7.5548 -0.8100 24 6 1.5429 -7.0995 -0.6459 25 6 1.3616 -6.0128 -1.5078 26 7 2.4782 -5.8190 -2.1616 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 5.8152 -2.1699 0.8919 31 1 5.8152 -2.1712 -0.8881 32 1 5.3311 -4.6351 0.8447 33 1 6.8898 -4.2194 0.0924 34 1 4.3759 -4.6329 -1.3900 35 1 7.2438 -5.9093 -2.7955 36 1 7.8436 -5.7975 -1.1234 37 1 8.5667 -7.9167 -2.1897 38 1 7.4659 -8.2306 -0.8262 39 1 6.6703 -8.1361 -3.7715 40 1 6.8617 -9.6117 -2.7952 41 1 5.0788 -8.8269 -1.2603 42 1 4.4790 -8.9376 -2.9327 43 1 3.2563 -8.3866 -0.2884 44 1 0.8044 -7.5042 0.0303 45 1 0.4575 -5.4316 -1.6124 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339090626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:55 Heat of formation + Delta-G solvation = 23.562246 kcal Electronic energy + Delta-G solvation = -24310.065317 eV Core-core repulsion = 20942.912365 eV Total energy + Delta-G solvation = -3367.152952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17558 -38.89788 -37.08417 -34.81863 -33.01951 -32.55940 -30.51128 -29.83046 -28.97708 -27.87064 -26.48134 -23.48517 -22.36661 -21.81720 -21.20683 -21.05981 -20.51775 -19.47662 -17.34262 -16.80883 -16.23188 -15.63191 -15.47881 -14.86817 -14.71530 -14.40141 -14.31617 -14.29724 -13.90058 -13.46240 -13.33206 -12.98504 -12.80371 -12.52922 -12.40568 -12.30150 -12.05838 -11.66425 -11.51449 -11.39718 -11.08460 -10.91494 -10.88246 -10.70035 -10.56383 -10.38198 -10.34365 -9.82133 -9.15199 -9.13021 -8.80031 -8.41957 -8.37984 -8.26086 -6.06530 -4.04599 2.11598 2.61101 3.16591 3.28612 3.34973 3.36837 3.97546 4.36058 4.40115 4.53585 4.61828 4.71640 4.74455 4.85888 4.98488 5.02503 5.09083 5.13366 5.23742 5.25054 5.42246 5.44202 5.51594 5.63044 5.68388 5.72781 5.76766 5.79945 5.85162 5.92882 5.95638 6.02500 6.09854 6.14872 6.24606 6.26480 6.65775 6.92913 7.05030 7.16089 7.21630 7.63862 7.69875 8.00216 8.06848 8.71991 9.05545 9.53239 11.06576 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018375 B = 0.004196 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.413149 B = 6671.438188 C = 7862.851988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.381 6.381 11 C 0.058 3.942 12 C 0.067 3.933 13 N -0.685 5.685 14 C 0.078 3.922 15 H 0.045 0.955 16 C -0.106 4.106 17 C -0.123 4.123 18 C -0.114 4.114 19 C -0.125 4.125 20 C 0.161 3.839 21 H 0.108 0.892 22 N -0.375 5.375 23 C 0.043 3.957 24 C -0.270 4.270 25 C 0.056 3.944 26 N -0.281 5.281 27 H 0.265 0.735 28 H 0.000 1.000 29 H -0.002 1.002 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.368 0.632 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.165 0.835 44 H 0.144 0.856 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.150 -19.131 -3.103 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.300 6.300 11 C -0.020 4.020 12 C -0.062 4.062 13 N -0.321 5.321 14 C -0.034 4.034 15 H 0.063 0.937 16 C -0.145 4.145 17 C -0.161 4.161 18 C -0.153 4.153 19 C -0.164 4.164 20 C 0.058 3.942 21 H 0.126 0.874 22 N -0.158 5.158 23 C -0.102 4.102 24 C -0.299 4.299 25 C -0.131 4.131 26 N -0.101 5.101 27 H 0.075 0.925 28 H 0.018 0.982 29 H 0.016 0.984 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.192 0.808 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.182 0.818 44 H 0.162 0.838 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 15.109 -18.239 -4.372 24.085 hybrid contribution -0.568 0.393 1.433 1.590 sum 14.542 -17.846 -2.939 23.207 Atomic orbital electron populations 1.69877 1.05995 1.26959 1.50615 1.24747 0.94788 0.98636 0.94730 0.86869 0.80320 0.83888 0.78774 1.19917 1.20839 1.19211 1.20870 0.88214 0.95274 1.50839 0.89967 1.20571 0.96202 0.79421 0.94187 1.87884 1.17432 1.29666 1.95037 1.22361 0.85118 0.95038 0.99483 1.21961 0.99333 0.94354 0.90551 1.60578 1.25324 1.11098 1.35118 1.21899 0.94706 0.89517 0.97244 0.93717 1.21551 0.94678 0.95572 1.02653 1.21609 0.99188 0.95460 0.99833 1.21500 0.93171 1.00845 0.99743 1.21885 0.97951 0.93870 1.02730 1.21453 0.76313 0.96550 0.99849 0.87427 1.48913 1.10971 1.24312 1.31572 1.22353 0.94528 0.98390 0.94957 1.21508 0.97606 1.02831 1.07980 1.23996 0.97181 0.96848 0.95074 1.77508 0.99195 1.09947 1.23481 0.92456 0.98195 0.98392 0.94052 0.93432 0.94978 0.90657 0.80792 0.90759 0.91337 0.91342 0.91926 0.91250 0.91126 0.91031 0.90670 0.81825 0.83824 0.79846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.51 -15.71 9.99 -34.44 -0.34 -16.06 16 8 H 0.08 2.75 8.06 -52.49 -0.42 2.32 16 9 C 0.17 4.56 4.76 36.00 0.17 4.73 16 10 O -0.38 -9.37 9.85 -35.23 -0.35 -9.71 16 11 C 0.06 1.10 6.28 37.16 0.23 1.33 16 12 C 0.07 1.07 5.90 -3.82 -0.02 1.05 16 13 N -0.69 -11.05 6.31 -106.73 -0.67 -11.72 16 14 C 0.08 0.95 2.18 -67.72 -0.15 0.80 16 15 H 0.04 0.56 7.80 -51.93 -0.40 0.16 16 16 C -0.11 -1.01 5.43 -26.73 -0.15 -1.15 16 17 C -0.12 -0.86 5.92 -26.73 -0.16 -1.01 16 18 C -0.11 -0.75 5.92 -26.73 -0.16 -0.91 16 19 C -0.13 -1.02 4.84 -26.76 -0.13 -1.15 16 20 C 0.16 1.89 2.76 -67.96 -0.19 1.70 16 21 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 22 N -0.38 -5.42 2.99 -54.89 -0.16 -5.59 16 23 C 0.04 0.56 10.59 -17.22 -0.18 0.38 16 24 C -0.27 -3.84 10.80 -40.01 -0.43 -4.27 16 25 C 0.06 0.93 12.03 -17.36 -0.21 0.73 16 26 N -0.28 -5.08 11.37 30.62 0.35 -4.73 16 27 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 29 H 0.00 -0.04 7.57 -51.93 -0.39 -0.43 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.08 0.98 7.44 -51.93 -0.39 0.59 16 34 H 0.37 7.16 6.13 -39.29 -0.24 6.92 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.65 7.45 -51.93 -0.39 0.27 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.53 7.16 -51.93 -0.37 0.16 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.16 1.52 7.26 -52.49 -0.38 1.14 16 44 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.18 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -34.13 357.39 -8.75 -42.89 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.60 Total: 5.21 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.81 Total: -11.76 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.28 Total: -49.33 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.35 Total: -9.71 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.13 -8.75 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339090626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.450 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds