Wall clock time and date at job start Tue Mar 31 2020 07:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99965 * 2 1 4 4 H 1.48499 * 109.47227 * 269.99955 * 3 2 1 5 5 H 1.48509 * 109.46931 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47101 * 149.99485 * 3 2 1 7 7 C 1.37875 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99957 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99731 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00252 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47388 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46994 * 65.00397 * 12 11 10 14 14 C 1.46894 * 111.00270 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47104 * 34.99612 * 14 13 12 16 16 C 1.52999 * 109.46927 * 275.00239 * 14 13 12 17 17 C 1.53005 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 14 19 19 C 1.53002 * 109.46817 * 300.00239 * 18 17 16 20 20 C 1.52997 * 109.47515 * 154.99879 * 14 13 12 21 21 H 1.09002 * 109.47153 * 59.99762 * 20 14 13 22 22 N 1.46500 * 109.47007 * 299.99851 * 20 14 13 23 23 C 1.34943 * 126.03641 * 275.00049 * 22 20 14 24 24 C 1.35318 * 107.74674 * 179.97438 * 23 22 20 25 25 C 1.39874 * 107.91737 * 0.02562 * 24 23 22 26 26 N 1.30835 * 108.20497 * 359.73670 * 25 24 23 27 27 H 0.96994 * 119.99681 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47265 * 59.99881 * 9 7 2 29 29 H 1.08995 * 109.47273 * 299.99811 * 9 7 2 30 30 H 1.09001 * 109.46868 * 60.00429 * 11 10 9 31 31 H 1.09001 * 109.47385 * 300.00659 * 11 10 9 32 32 H 1.09000 * 109.47032 * 305.00654 * 12 11 10 33 33 H 1.08998 * 109.47074 * 185.00185 * 12 11 10 34 34 H 1.00907 * 110.99514 * 303.95478 * 13 12 11 35 35 H 1.09002 * 109.46716 * 299.99610 * 16 14 13 36 36 H 1.09000 * 109.47486 * 59.99528 * 16 14 13 37 37 H 1.09001 * 109.46812 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.46935 * 299.99411 * 17 16 14 39 39 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 40 40 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 41 41 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 42 42 H 1.09004 * 109.46733 * 179.97438 * 19 18 17 43 43 H 1.08000 * 126.13092 * 359.97438 * 23 22 20 44 44 H 1.08001 * 126.04433 * 179.97438 * 24 23 22 45 45 H 1.07997 * 125.89476 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0022 11 6 5.4124 -2.6541 0.0022 12 6 5.8070 -4.1324 0.0028 13 7 5.3678 -4.7569 -1.2523 14 6 5.7299 -6.1801 -1.2871 15 1 5.6525 -6.5993 -0.2839 16 6 7.1664 -6.3285 -1.7924 17 6 7.5434 -7.8110 -1.8293 18 6 6.5928 -8.5558 -2.7686 19 6 5.1563 -8.4073 -2.2632 20 6 4.7794 -6.9254 -2.2261 21 1 4.8567 -6.5062 -3.2293 22 7 3.4039 -6.7832 -1.7422 23 6 2.8065 -7.5548 -0.8100 24 6 1.5429 -7.0995 -0.6459 25 6 1.3616 -6.0128 -1.5078 26 7 2.4782 -5.8190 -2.1616 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 5.8152 -2.1699 0.8919 31 1 5.8152 -2.1712 -0.8881 32 1 5.3311 -4.6351 0.8447 33 1 6.8898 -4.2194 0.0924 34 1 4.3759 -4.6329 -1.3900 35 1 7.2438 -5.9093 -2.7955 36 1 7.8436 -5.7975 -1.1234 37 1 8.5667 -7.9167 -2.1897 38 1 7.4659 -8.2306 -0.8262 39 1 6.6703 -8.1361 -3.7715 40 1 6.8617 -9.6117 -2.7952 41 1 5.0788 -8.8269 -1.2603 42 1 4.4790 -8.9376 -2.9327 43 1 3.2563 -8.3866 -0.2884 44 1 0.8044 -7.5042 0.0303 45 1 0.4575 -5.4316 -1.6124 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339090626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:54 Heat of formation + Delta-G solvation = -0.379938 kcal Electronic energy + Delta-G solvation = -24311.103528 eV Core-core repulsion = 20942.912365 eV Total energy + Delta-G solvation = -3368.191163 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.27585 -39.85202 -38.77420 -36.03769 -34.81000 -33.95257 -31.70252 -30.95844 -30.22839 -29.55845 -27.77487 -24.37802 -24.02297 -23.42204 -22.33857 -22.08508 -21.56821 -20.35477 -19.07982 -18.34223 -17.66864 -17.04029 -16.93657 -16.46032 -15.89114 -15.76580 -15.40100 -15.17895 -15.12525 -14.83916 -14.54661 -14.47273 -13.92983 -13.70716 -13.65867 -13.52043 -13.31050 -13.07953 -12.95793 -12.55978 -12.40318 -12.18263 -12.14122 -11.85131 -11.65219 -11.51929 -11.44952 -11.39581 -11.29444 -10.94560 -10.42259 -10.32315 -9.51445 -9.46148 -8.38548 -6.46121 0.99375 1.30228 1.33636 1.44167 1.59229 1.94582 2.27305 2.93484 2.95806 3.05230 3.52787 3.67398 3.82804 3.90446 4.04987 4.10821 4.14354 4.18364 4.21259 4.32119 4.38269 4.43243 4.46925 4.53892 4.63153 4.67577 4.77455 4.82567 4.83533 4.93252 4.95736 5.00157 5.12588 5.14495 5.16822 5.26643 5.31620 5.40624 5.49714 5.71123 5.90877 6.04016 6.20247 6.28381 6.56717 6.70844 6.80261 7.17585 8.78664 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018375 B = 0.004196 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.413149 B = 6671.438188 C = 7862.851988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.542 4.542 8 H 0.028 0.972 9 C 0.183 3.817 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.074 3.926 13 N -0.700 5.700 14 C 0.079 3.921 15 H 0.047 0.953 16 C -0.100 4.100 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.117 4.117 20 C 0.155 3.845 21 H 0.089 0.911 22 N -0.372 5.372 23 C 0.055 3.945 24 C -0.284 4.284 25 C 0.027 3.973 26 N -0.332 5.332 27 H 0.273 0.727 28 H 0.012 0.988 29 H 0.005 0.995 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.112 0.888 34 H 0.346 0.654 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.208 0.792 44 H 0.164 0.836 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.553 -19.929 -2.469 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.170 1.170 7 C -0.580 4.580 8 H 0.046 0.954 9 C 0.107 3.893 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.055 4.055 13 N -0.334 5.334 14 C -0.032 4.032 15 H 0.065 0.935 16 C -0.139 4.139 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.156 4.156 20 C 0.054 3.946 21 H 0.107 0.893 22 N -0.155 5.155 23 C -0.091 4.091 24 C -0.314 4.314 25 C -0.158 4.158 26 N -0.153 5.153 27 H 0.082 0.918 28 H 0.030 0.970 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.130 0.870 34 H 0.167 0.833 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.225 0.775 44 H 0.182 0.818 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 18.542 -19.065 -3.742 26.857 hybrid contribution -1.644 0.540 1.220 2.117 sum 16.899 -18.525 -2.522 25.201 Atomic orbital electron populations 1.70032 1.08145 1.28723 1.51000 1.25809 0.95819 1.03244 0.93427 0.85623 0.79439 0.77640 0.79709 1.18607 1.19462 1.17048 1.21091 0.90741 0.93789 1.52368 0.95396 1.20279 0.93481 0.80777 0.94715 1.87854 1.21197 1.28490 1.95224 1.22719 0.81993 0.97614 1.00499 1.21988 1.01193 0.92166 0.90144 1.60680 1.23656 1.13898 1.35141 1.22060 0.96375 0.87242 0.97519 0.93523 1.21542 0.92566 0.97844 1.01962 1.21590 1.00071 0.93196 1.00574 1.21518 0.91722 1.02235 0.99388 1.21901 0.99107 0.90671 1.03872 1.21746 0.74976 0.99196 0.98711 0.89272 1.49148 1.11384 1.23415 1.31528 1.23003 0.93877 0.98428 0.93791 1.21810 0.99040 1.02335 1.08168 1.24143 0.97105 0.98177 0.96399 1.77402 1.00361 1.12200 1.25327 0.91788 0.97032 0.97699 0.92096 0.93105 0.96109 0.86959 0.83333 0.91646 0.91018 0.89673 0.90998 0.91533 0.88771 0.89452 0.90497 0.77489 0.81848 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.70 13.96 21.45 0.30 -60.40 16 2 C 0.02 0.92 5.47 84.65 0.46 1.39 16 3 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 7 C -0.54 -34.60 9.99 25.60 0.26 -34.35 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 9 C 0.18 9.81 4.76 71.23 0.34 10.15 16 10 O -0.41 -20.53 9.85 -148.98 -1.47 -21.99 16 11 C 0.05 1.80 6.28 71.98 0.45 2.26 16 12 C 0.07 2.27 5.90 86.30 0.51 2.78 16 13 N -0.70 -22.55 6.31 -491.58 -3.10 -25.65 16 14 C 0.08 1.82 2.18 44.92 0.10 1.92 16 15 H 0.05 1.07 7.80 -2.39 -0.02 1.05 16 16 C -0.10 -1.67 5.43 30.60 0.17 -1.51 16 17 C -0.12 -1.19 5.92 30.60 0.18 -1.01 16 18 C -0.11 -1.08 5.92 30.59 0.18 -0.90 16 19 C -0.12 -1.59 4.84 30.58 0.15 -1.44 16 20 C 0.16 3.55 2.76 44.97 0.12 3.68 16 21 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 22 N -0.37 -10.91 2.99 -327.58 -0.98 -11.89 16 23 C 0.06 1.38 10.59 83.54 0.88 2.26 16 24 C -0.28 -8.31 10.80 21.99 0.24 -8.07 16 25 C 0.03 0.99 12.03 85.24 1.03 2.02 16 26 N -0.33 -12.86 11.37 -57.02 -0.65 -13.51 16 27 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 28 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 29 H 0.01 0.27 7.57 -2.39 -0.02 0.26 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.02 0.68 8.05 -2.39 -0.02 0.66 16 33 H 0.11 2.59 7.44 -2.39 -0.02 2.58 16 34 H 0.35 13.99 6.13 -89.69 -0.55 13.44 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.15 7.45 -2.39 -0.02 1.14 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 0.94 7.16 -2.39 -0.02 0.93 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.21 3.16 7.26 -2.91 -0.02 3.14 16 44 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 45 H 0.18 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -79.16 357.39 1.40 -77.76 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.35 Total: 29.57 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 5.07 Total: -20.83 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.43 Total: -111.45 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -1.47 Total: -21.99 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -79.16 1.40 -77.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339090626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.379 kcal (2) G-P(sol) polarization free energy of solvation -79.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds