Wall clock time and date at job start Tue Mar 31 2020 07:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00012 * 2 1 4 4 C 1.50697 * 109.46927 * 180.02562 * 3 2 1 5 5 N 1.30412 * 119.29058 * 179.72763 * 4 3 2 6 6 C 1.33780 * 122.02699 * 179.75379 * 5 4 3 7 7 C 1.50698 * 119.79170 * 180.24778 * 6 5 4 8 8 C 1.35644 * 120.41332 * 0.52376 * 6 5 4 9 9 C 1.41983 * 118.59864 * 359.74741 * 8 6 5 10 10 N 1.31483 * 120.91422 * 180.02562 * 9 8 6 11 11 C 1.46500 * 120.00119 * 353.68887 * 10 9 8 12 12 C 1.53002 * 109.46915 * 114.38624 * 11 10 9 13 13 C 1.53001 * 109.47447 * 300.00253 * 12 11 10 14 14 C 1.52998 * 109.46961 * 60.00357 * 12 11 10 15 15 C 1.52996 * 109.46929 * 180.02562 * 12 11 10 16 16 C 1.50694 * 109.47270 * 180.02562 * 15 12 11 17 17 H 1.08003 * 120.00097 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00212 * 180.02562 * 16 15 12 19 19 N 1.31518 * 120.00096 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99936 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47300 * 60.00246 * 20 18 16 22 22 H 1.48505 * 109.46964 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47067 * 299.99542 * 20 18 16 24 24 N 1.35655 * 119.29147 * 0.02562 * 4 3 2 25 25 H 0.97000 * 120.31597 * 0.02562 * 24 4 3 26 26 H 1.08995 * 109.47409 * 299.99801 * 1 2 3 27 27 H 1.09002 * 109.47661 * 60.00113 * 1 2 3 28 28 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47002 * 60.00051 * 3 2 1 30 30 H 1.09000 * 109.46949 * 300.00291 * 3 2 1 31 31 H 1.09004 * 109.47506 * 270.27713 * 7 6 5 32 32 H 1.09011 * 109.47008 * 30.26827 * 7 6 5 33 33 H 1.08999 * 109.47404 * 150.26722 * 7 6 5 34 34 H 1.07996 * 120.69536 * 179.72960 * 8 6 5 35 35 H 1.08992 * 109.46984 * 234.39297 * 11 10 9 36 36 H 1.08998 * 109.47045 * 354.39068 * 11 10 9 37 37 H 1.08995 * 109.46914 * 60.00113 * 13 12 11 38 38 H 1.09001 * 109.46951 * 180.02562 * 13 12 11 39 39 H 1.08994 * 109.46711 * 300.00079 * 13 12 11 40 40 H 1.09001 * 109.47569 * 59.99409 * 14 12 11 41 41 H 1.09001 * 109.47164 * 179.97438 * 14 12 11 42 42 H 1.09005 * 109.47302 * 299.99872 * 14 12 11 43 43 H 1.09004 * 109.47327 * 300.00629 * 15 12 11 44 44 H 1.09002 * 109.47537 * 60.00477 * 15 12 11 45 45 H 0.96996 * 119.99653 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2384 2.2698 -0.0061 6 6 5.5755 2.2280 -0.0021 7 6 6.3648 3.5117 -0.0032 8 6 6.2252 1.0373 -0.0027 9 6 5.4565 -0.1565 -0.0022 10 7 6.0392 -1.3351 -0.0023 11 6 7.4942 -1.4330 -0.1423 12 6 8.0939 -1.9964 1.1476 13 6 7.7552 -1.0680 2.3156 14 6 7.5127 -3.3861 1.4157 15 6 9.6135 -2.0981 1.0015 16 6 10.2042 -2.6536 2.2717 17 1 9.5602 -2.9082 3.1005 18 6 11.5669 -2.8357 2.3763 19 7 12.3512 -2.5251 1.3673 20 14 12.2991 -3.5236 3.9511 21 1 11.7359 -4.8729 4.2108 22 1 13.7742 -3.6212 3.8098 23 1 11.9696 -2.6230 5.0849 24 7 4.0806 -0.0454 -0.0016 25 1 3.5253 -0.8408 -0.0023 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 6.5539 3.8212 -1.0311 32 1 5.7974 4.2875 0.5112 33 1 7.3138 3.3552 0.5097 34 1 7.3045 0.9982 -0.0039 35 1 7.7353 -2.0944 -0.9744 36 1 7.9082 -0.4430 -0.3333 37 1 6.6727 -0.9952 2.4198 38 1 8.1829 -1.4692 3.2344 39 1 8.1693 -0.0780 2.1245 40 1 7.7539 -4.0476 0.5836 41 1 7.9403 -3.7877 2.3344 42 1 6.4301 -3.3133 1.5198 43 1 9.8551 -2.7592 0.1693 44 1 10.0273 -1.1078 0.8108 45 1 13.3098 -2.6529 1.4410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340925652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:04 Heat of formation + Delta-G solvation = 4.200989 kcal Electronic energy + Delta-G solvation = -23707.954400 eV Core-core repulsion = 20339.961880 eV Total energy + Delta-G solvation = -3367.992519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02690 -38.43831 -37.28304 -35.18607 -34.30468 -32.31775 -30.93968 -29.15556 -27.76380 -26.86009 -26.37644 -26.16708 -25.74825 -23.04365 -22.31308 -20.88738 -18.54945 -17.82103 -17.50788 -16.67134 -16.44072 -16.25351 -16.09460 -15.16704 -15.03085 -14.47052 -13.92354 -13.62674 -13.59531 -13.39144 -13.22099 -12.79570 -12.59506 -12.39560 -12.29529 -12.00759 -11.94260 -11.79061 -11.27135 -10.93470 -10.81667 -10.75511 -10.46846 -10.42886 -10.40824 -10.11671 -9.98023 -9.81882 -9.59072 -9.11557 -8.81973 -8.60078 -8.26658 -7.22615 -5.91354 -3.91230 0.79815 2.02811 2.66990 2.78243 3.37992 3.42059 3.44858 3.65689 4.16088 4.46957 4.52891 4.71800 4.74692 4.85158 4.90956 4.97218 5.20486 5.21789 5.27952 5.44183 5.48965 5.55577 5.79859 5.82856 5.96936 6.06199 6.12057 6.21609 6.32637 6.43222 6.56643 6.63097 6.77013 6.80610 6.90718 6.92445 7.12518 7.28749 7.33755 7.42352 7.75611 7.91163 7.92675 8.08866 8.37232 8.55407 9.13634 9.71040 11.20238 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022821 B = 0.003294 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.641408 B = 8499.073053 C = 9187.716131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.397 6.397 3 C 0.114 3.886 4 C 0.409 3.591 5 N -0.558 5.558 6 C 0.149 3.851 7 C -0.102 4.102 8 C -0.255 4.255 9 C 0.377 3.623 10 N -0.582 5.582 11 C 0.074 3.926 12 C -0.054 4.054 13 C -0.120 4.120 14 C -0.115 4.115 15 C 0.034 3.966 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 N -0.604 5.604 25 H 0.425 0.575 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.028 0.972 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.015 0.985 44 H 0.013 0.987 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.356 10.846 -4.338 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.315 6.315 3 C 0.036 3.964 4 C 0.141 3.859 5 N -0.285 5.285 6 C 0.031 3.969 7 C -0.159 4.159 8 C -0.282 4.282 9 C 0.106 3.894 10 N -0.307 5.307 11 C -0.055 4.055 12 C -0.055 4.055 13 C -0.178 4.178 14 C -0.172 4.172 15 C -0.003 4.003 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 N -0.228 5.228 25 H 0.265 0.735 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.169 0.831 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.250 10.540 -4.348 25.895 hybrid contribution 1.086 -0.586 0.824 1.484 sum -22.163 9.954 -3.524 24.550 Atomic orbital electron populations 1.22817 0.78815 1.03679 1.00626 1.87734 1.21514 1.26546 1.95754 1.21230 0.85098 0.86015 1.04063 1.22443 0.94580 0.80795 0.88098 1.67532 1.07498 1.26573 1.26865 1.20580 0.88395 0.95630 0.92256 1.20695 0.98863 0.93317 1.03033 1.22381 1.02335 0.91581 1.11891 1.18936 0.83014 0.91999 0.95452 1.72292 1.13350 1.20418 1.24609 1.22200 0.84463 0.99667 0.99215 1.20665 0.98151 0.94796 0.91893 1.21679 0.98119 0.98496 0.99481 1.21586 0.98461 0.96066 1.01106 1.19129 0.87225 0.96819 0.97131 1.21202 0.91615 1.41554 1.00027 0.92430 1.25009 0.97423 0.95966 0.96164 1.69959 1.04117 1.49009 1.30726 0.86730 0.77943 0.79638 0.84116 1.20327 1.21425 1.20382 1.42520 1.06095 1.09393 1.64828 0.73519 0.93318 0.93354 0.88827 0.88818 0.88828 0.90375 0.90576 0.90355 0.83147 0.90863 0.94269 0.95261 0.92114 0.94367 0.94151 0.92727 0.94206 0.96644 0.96892 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.15 11.01 101.05 1.11 1.26 16 2 O -0.40 -2.91 9.37 -35.23 -0.33 -3.24 16 3 C 0.11 0.79 6.46 36.00 0.23 1.02 16 4 C 0.41 4.56 7.71 -154.93 -1.19 3.36 16 5 N -0.56 -6.92 10.18 -6.81 -0.07 -6.99 16 6 C 0.15 1.98 6.76 -82.67 -0.56 1.42 16 7 C -0.10 -1.05 10.17 36.00 0.37 -0.68 16 8 C -0.26 -3.91 8.86 -39.08 -0.35 -4.26 16 9 C 0.38 6.10 7.53 -155.63 -1.17 4.93 16 10 N -0.58 -10.72 9.18 -60.07 -0.55 -11.27 16 11 C 0.07 1.48 5.10 -4.04 -0.02 1.46 16 12 C -0.05 -1.20 0.60 -154.51 -0.09 -1.29 16 13 C -0.12 -2.56 8.06 37.16 0.30 -2.26 16 14 C -0.11 -2.48 8.06 37.16 0.30 -2.18 16 15 C 0.03 0.91 4.04 -27.89 -0.11 0.80 16 16 C -0.51 -14.36 7.65 -34.44 -0.26 -14.62 16 17 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 20 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 N -0.60 -7.87 5.36 -9.29 -0.05 -7.92 16 25 H 0.43 5.14 7.58 -40.82 -0.31 4.83 16 26 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 27 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.15 2.40 5.90 -52.49 -0.31 2.09 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.04 0.76 5.30 -51.93 -0.28 0.48 16 37 H 0.03 0.58 7.44 -51.93 -0.39 0.20 16 38 H 0.06 1.36 6.62 -51.93 -0.34 1.01 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 1.23 6.62 -51.93 -0.34 0.88 16 42 H 0.04 0.81 7.60 -51.93 -0.39 0.41 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -33.40 362.53 -8.66 -42.05 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.29 Total: 1.01 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.55 Total: -9.55 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.07 Total: -52.85 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.33 Total: -3.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.40 -8.66 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340925652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.255 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds