Wall clock time and date at job start Tue Mar 31 2020 07:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00012 * 2 1 4 4 C 1.50697 * 109.46927 * 180.02562 * 3 2 1 5 5 N 1.30412 * 119.29058 * 179.72763 * 4 3 2 6 6 C 1.33780 * 122.02699 * 179.75379 * 5 4 3 7 7 C 1.50698 * 119.79170 * 180.24778 * 6 5 4 8 8 C 1.35644 * 120.41332 * 0.52376 * 6 5 4 9 9 C 1.41983 * 118.59864 * 359.74741 * 8 6 5 10 10 N 1.31483 * 120.91422 * 180.02562 * 9 8 6 11 11 C 1.46500 * 120.00119 * 353.68887 * 10 9 8 12 12 C 1.53002 * 109.46915 * 114.38624 * 11 10 9 13 13 C 1.53001 * 109.47447 * 300.00253 * 12 11 10 14 14 C 1.52998 * 109.46961 * 60.00357 * 12 11 10 15 15 C 1.52996 * 109.46929 * 180.02562 * 12 11 10 16 16 C 1.50694 * 109.47270 * 180.02562 * 15 12 11 17 17 H 1.08003 * 120.00097 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00212 * 180.02562 * 16 15 12 19 19 N 1.31518 * 120.00096 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99936 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47300 * 60.00246 * 20 18 16 22 22 H 1.48505 * 109.46964 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47067 * 299.99542 * 20 18 16 24 24 N 1.35655 * 119.29147 * 0.02562 * 4 3 2 25 25 H 0.97000 * 120.31597 * 0.02562 * 24 4 3 26 26 H 1.08995 * 109.47409 * 299.99801 * 1 2 3 27 27 H 1.09002 * 109.47661 * 60.00113 * 1 2 3 28 28 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47002 * 60.00051 * 3 2 1 30 30 H 1.09000 * 109.46949 * 300.00291 * 3 2 1 31 31 H 1.09004 * 109.47506 * 270.27713 * 7 6 5 32 32 H 1.09011 * 109.47008 * 30.26827 * 7 6 5 33 33 H 1.08999 * 109.47404 * 150.26722 * 7 6 5 34 34 H 1.07996 * 120.69536 * 179.72960 * 8 6 5 35 35 H 1.08992 * 109.46984 * 234.39297 * 11 10 9 36 36 H 1.08998 * 109.47045 * 354.39068 * 11 10 9 37 37 H 1.08995 * 109.46914 * 60.00113 * 13 12 11 38 38 H 1.09001 * 109.46951 * 180.02562 * 13 12 11 39 39 H 1.08994 * 109.46711 * 300.00079 * 13 12 11 40 40 H 1.09001 * 109.47569 * 59.99409 * 14 12 11 41 41 H 1.09001 * 109.47164 * 179.97438 * 14 12 11 42 42 H 1.09005 * 109.47302 * 299.99872 * 14 12 11 43 43 H 1.09004 * 109.47327 * 300.00629 * 15 12 11 44 44 H 1.09002 * 109.47537 * 60.00477 * 15 12 11 45 45 H 0.96996 * 119.99653 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2384 2.2698 -0.0061 6 6 5.5755 2.2280 -0.0021 7 6 6.3648 3.5117 -0.0032 8 6 6.2252 1.0373 -0.0027 9 6 5.4565 -0.1565 -0.0022 10 7 6.0392 -1.3351 -0.0023 11 6 7.4942 -1.4330 -0.1423 12 6 8.0939 -1.9964 1.1476 13 6 7.7552 -1.0680 2.3156 14 6 7.5127 -3.3861 1.4157 15 6 9.6135 -2.0981 1.0015 16 6 10.2042 -2.6536 2.2717 17 1 9.5602 -2.9082 3.1005 18 6 11.5669 -2.8357 2.3763 19 7 12.3512 -2.5251 1.3673 20 14 12.2991 -3.5236 3.9511 21 1 11.7359 -4.8729 4.2108 22 1 13.7742 -3.6212 3.8098 23 1 11.9696 -2.6230 5.0849 24 7 4.0806 -0.0454 -0.0016 25 1 3.5253 -0.8408 -0.0023 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 6.5539 3.8212 -1.0311 32 1 5.7974 4.2875 0.5112 33 1 7.3138 3.3552 0.5097 34 1 7.3045 0.9982 -0.0039 35 1 7.7353 -2.0944 -0.9744 36 1 7.9082 -0.4430 -0.3333 37 1 6.6727 -0.9952 2.4198 38 1 8.1829 -1.4692 3.2344 39 1 8.1693 -0.0780 2.1245 40 1 7.7539 -4.0476 0.5836 41 1 7.9403 -3.7877 2.3344 42 1 6.4301 -3.3133 1.5198 43 1 9.8551 -2.7592 0.1693 44 1 10.0273 -1.1078 0.8108 45 1 13.3098 -2.6529 1.4410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340925652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:04 Heat of formation + Delta-G solvation = -17.179263 kcal Electronic energy + Delta-G solvation = -23708.881517 eV Core-core repulsion = 20339.961880 eV Total energy + Delta-G solvation = -3368.919637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08384 -39.19577 -38.71392 -36.41469 -35.54859 -34.33396 -32.16162 -29.87109 -29.08784 -28.62289 -27.92463 -27.31280 -26.77036 -24.99465 -23.22530 -22.19703 -19.59897 -19.52680 -18.58135 -18.34166 -17.24202 -17.07607 -16.95637 -16.66482 -16.18060 -16.01695 -15.39055 -15.18387 -14.90015 -14.44181 -14.19886 -14.12255 -13.96162 -13.73157 -13.46891 -13.26535 -13.09752 -12.84544 -12.75292 -12.62262 -12.53620 -12.34194 -12.32947 -12.11181 -11.90052 -11.51248 -11.22206 -11.06991 -10.93792 -10.87328 -10.64503 -10.51676 -10.03387 -8.48968 -8.14429 -6.22768 -0.23354 0.87337 1.39010 1.41917 1.49320 1.62248 2.16935 2.42568 2.55133 3.17927 3.42710 3.55983 3.85257 3.90804 4.09455 4.21377 4.26220 4.32220 4.33525 4.40721 4.56793 4.58050 4.66054 4.68418 4.77448 4.82467 4.88665 4.90187 4.97360 5.01066 5.04124 5.09509 5.16836 5.30541 5.41029 5.45761 5.47972 5.57827 5.66373 5.82106 5.88571 6.00432 6.07527 6.32707 6.88505 6.90237 7.10258 7.44088 8.97114 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022821 B = 0.003294 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.641408 B = 8499.073053 C = 9187.716131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.419 6.419 3 C 0.118 3.882 4 C 0.415 3.585 5 N -0.565 5.565 6 C 0.171 3.829 7 C -0.102 4.102 8 C -0.301 4.301 9 C 0.387 3.613 10 N -0.617 5.617 11 C 0.088 3.912 12 C -0.052 4.052 13 C -0.105 4.105 14 C -0.104 4.104 15 C 0.044 3.956 16 C -0.518 4.518 17 H 0.062 0.938 18 C -0.002 4.002 19 N -0.936 5.936 20 Si 0.958 3.042 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.268 1.268 24 N -0.598 5.598 25 H 0.431 0.569 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.041 0.959 42 H 0.054 0.946 43 H -0.014 1.014 44 H -0.013 1.013 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.940 12.151 -3.399 28.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.339 6.339 3 C 0.040 3.960 4 C 0.149 3.851 5 N -0.291 5.291 6 C 0.053 3.947 7 C -0.160 4.160 8 C -0.328 4.328 9 C 0.117 3.883 10 N -0.345 5.345 11 C -0.043 4.043 12 C -0.052 4.052 13 C -0.162 4.162 14 C -0.161 4.161 15 C 0.006 3.994 16 C -0.556 4.556 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.577 5.577 20 Si 0.783 3.217 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.193 1.193 24 N -0.222 5.222 25 H 0.271 0.729 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.004 0.996 44 H 0.006 0.994 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.906 11.852 -3.406 28.691 hybrid contribution 1.687 -0.828 0.462 1.935 sum -24.218 11.024 -2.944 26.772 Atomic orbital electron populations 1.23008 0.77038 1.04419 1.01963 1.87704 1.23372 1.26768 1.96022 1.21451 0.81822 0.86456 1.06276 1.23489 0.96632 0.79642 0.85348 1.67702 1.06874 1.26816 1.27722 1.21061 0.89074 0.96061 0.88550 1.20807 0.98695 0.92175 1.04275 1.22239 1.01770 0.92245 1.16587 1.19162 0.84233 0.91837 0.93064 1.72270 1.11537 1.21446 1.29199 1.21844 0.86252 0.98970 0.97206 1.20534 0.95171 0.95721 0.93798 1.21493 0.98635 0.97928 0.98138 1.21462 0.99163 0.95418 1.00074 1.18971 0.90462 0.94391 0.95541 1.21534 0.92091 1.41312 1.00631 0.91985 1.25917 0.97976 0.96298 0.99705 1.70102 1.04439 1.50182 1.32972 0.85615 0.77074 0.79210 0.79851 1.19400 1.20969 1.19292 1.42642 1.04999 1.10642 1.63880 0.72856 0.92047 0.91924 0.88517 0.86478 0.86285 0.88744 0.89015 0.90286 0.84644 0.92393 0.94475 0.94051 0.93513 0.94554 0.94785 0.93965 0.92726 0.99591 0.99435 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.42 -4.94 9.37 -148.98 -1.40 -6.34 16 3 C 0.12 1.20 6.46 71.24 0.46 1.66 16 4 C 0.42 8.20 7.71 137.96 1.06 9.26 16 5 N -0.56 -12.56 10.18 -175.46 -1.79 -14.35 16 6 C 0.17 4.30 6.76 41.66 0.28 4.58 16 7 C -0.10 -1.91 10.17 71.24 0.72 -1.18 16 8 C -0.30 -9.24 8.86 22.60 0.20 -9.04 16 9 C 0.39 12.42 7.53 134.38 1.01 13.44 16 10 N -0.62 -23.06 9.18 -343.95 -3.16 -26.22 16 11 C 0.09 3.66 5.10 86.38 0.44 4.10 16 12 C -0.05 -2.36 0.60 -52.18 -0.03 -2.39 16 13 C -0.10 -4.51 8.06 71.98 0.58 -3.93 16 14 C -0.10 -4.57 8.06 71.98 0.58 -3.99 16 15 C 0.04 2.44 4.04 29.84 0.12 2.56 16 16 C -0.52 -30.12 7.65 25.60 0.20 -29.92 16 17 H 0.06 3.49 5.68 -2.91 -0.02 3.48 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.94 -58.61 13.29 21.45 0.28 -58.32 16 20 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 N -0.60 -14.74 5.36 -183.32 -0.98 -15.72 16 25 H 0.43 9.79 7.58 -92.71 -0.70 9.09 16 26 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.49 8.07 -2.39 -0.02 1.47 16 34 H 0.14 4.53 5.90 -2.91 -0.02 4.51 16 35 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.04 1.53 5.30 -2.39 -0.01 1.52 16 37 H 0.04 1.65 7.44 -2.39 -0.02 1.64 16 38 H 0.05 2.10 6.62 -2.39 -0.02 2.09 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 1.92 6.62 -2.39 -0.02 1.90 16 42 H 0.05 2.22 7.60 -2.38 -0.02 2.20 16 43 H -0.01 -0.87 8.14 -2.38 -0.02 -0.88 16 44 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -73.42 362.53 2.61 -70.81 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.28 Total: 15.44 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 7.34 Total: -13.10 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -5.64 Total: -114.62 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -1.40 Total: -6.34 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -73.42 2.61 -70.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340925652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.634 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds