Wall clock time and date at job start Tue Mar 31 2020 06:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.46902 * 2 1 4 4 C 1.35995 * 116.99898 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.07155 * 0.02562 * 4 3 2 6 6 C 1.38243 * 119.99788 * 180.02562 * 5 4 3 7 7 C 1.38249 * 120.14768 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.92353 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46614 * 199.97821 * 8 7 6 10 10 C 1.52995 * 109.47111 * 79.98317 * 8 7 6 11 11 N 1.46892 * 109.47673 * 319.97724 * 8 7 6 12 12 C 1.46897 * 111.00357 * 205.00030 * 11 8 7 13 13 C 1.53002 * 109.47003 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47109 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99933 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00373 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00315 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46914 * 89.99984 * 18 16 14 20 20 H 1.48499 * 109.47108 * 210.00301 * 18 16 14 21 21 H 1.48501 * 109.46731 * 330.00210 * 18 16 14 22 22 C 1.38236 * 120.14650 * 0.02562 * 7 6 5 23 23 C 1.38566 * 120.00196 * 359.97438 * 22 7 6 24 24 O 1.35992 * 120.07720 * 180.02562 * 23 22 7 25 25 C 1.42900 * 116.99608 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46950 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47291 * 299.99656 * 1 2 3 28 28 H 1.09002 * 109.46710 * 59.99872 * 1 2 3 29 29 H 1.09007 * 109.46695 * 240.00316 * 2 1 3 30 30 H 1.08994 * 109.46859 * 120.00412 * 2 1 3 31 31 H 1.08000 * 120.00430 * 359.74911 * 5 4 3 32 32 H 1.08003 * 119.92661 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47370 * 299.99936 * 10 8 7 34 34 H 1.09007 * 109.47306 * 59.99440 * 10 8 7 35 35 H 1.09001 * 109.47446 * 179.97438 * 10 8 7 36 36 H 1.00902 * 111.00365 * 328.95751 * 11 8 7 37 37 H 1.08991 * 109.47261 * 299.99933 * 12 11 8 38 38 H 1.08996 * 109.47223 * 60.00522 * 12 11 8 39 39 H 1.08997 * 109.47662 * 299.99873 * 13 12 11 40 40 H 1.09003 * 109.47081 * 60.00344 * 13 12 11 41 41 H 0.97006 * 119.99731 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.99984 * 179.97438 * 22 7 6 43 43 H 1.09008 * 109.46964 * 179.97438 * 25 24 23 44 44 H 1.08991 * 109.47385 * 299.99975 * 25 24 23 45 45 H 1.09002 * 109.47350 * 60.00319 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2000 0.4277 0.0005 6 6 5.5703 0.6106 0.0016 7 6 6.1004 1.8875 0.0033 8 6 7.5949 2.0810 0.0038 9 1 7.8310 3.0851 0.3562 10 6 8.1332 1.8994 -1.4167 11 7 8.2166 1.0912 0.8934 12 6 9.5128 1.5710 1.3909 13 6 10.1284 0.5151 2.3113 14 6 11.4585 1.0071 2.8211 15 1 11.8276 1.9762 2.5192 16 6 12.2037 0.2206 3.6738 17 7 11.7540 -0.9592 4.0418 18 14 13.8521 0.8307 4.3063 19 1 13.6500 1.5788 5.5731 20 1 14.7473 -0.3281 4.5531 21 1 14.4692 1.7266 3.2955 22 6 5.2625 2.9870 0.0043 23 6 3.8881 2.8107 0.0033 24 8 3.0624 3.8913 0.0038 25 6 3.6803 5.1798 0.0061 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.7886 -0.5709 0.0042 32 1 6.2283 -0.2459 0.0020 33 1 7.8970 0.8954 -1.7692 34 1 7.6719 2.6340 -2.0768 35 1 9.2141 2.0398 -1.4164 36 1 7.6013 0.8545 1.6573 37 1 10.1806 1.7522 0.5488 38 1 9.3684 2.4977 1.9461 39 1 9.4608 0.3334 3.1535 40 1 10.2729 -0.4115 1.7556 41 1 12.2784 -1.5127 4.6415 42 1 5.6791 3.9834 0.0060 43 1 2.9106 5.9518 0.0058 44 1 4.2997 5.2841 0.8967 45 1 4.3016 5.2864 -0.8832 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341478237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:47 Heat of formation + Delta-G solvation = -63.451598 kcal Electronic energy + Delta-G solvation = -23110.099434 eV Core-core repulsion = 19706.880527 eV Total energy + Delta-G solvation = -3403.218907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68032 -38.64568 -37.99775 -35.70183 -33.29688 -32.09640 -31.21617 -30.26109 -28.90410 -27.95166 -27.17994 -24.44858 -23.94110 -22.93520 -21.63619 -20.48781 -20.26586 -18.57319 -17.13546 -16.65828 -16.39217 -16.21925 -15.61652 -15.43071 -14.82822 -14.72948 -14.41336 -14.23485 -13.88297 -13.46896 -13.24081 -12.86730 -12.81654 -12.62256 -12.28699 -12.21669 -12.07341 -11.95022 -11.69901 -11.43810 -11.13223 -11.11026 -11.02769 -10.98706 -10.77181 -10.61090 -10.50185 -9.94779 -9.37904 -9.14212 -8.73520 -8.34957 -7.84849 -7.77488 -5.99355 -4.01818 1.24045 1.42476 3.06161 3.17108 3.32093 3.38292 3.41569 3.67991 4.42457 4.57899 4.67300 4.69620 4.81255 4.85572 4.95769 5.00036 5.01903 5.04766 5.29382 5.32869 5.36667 5.37460 5.42105 5.51597 5.54059 5.59850 5.69724 5.77968 5.92035 6.07568 6.17629 6.27292 6.37940 6.39939 6.47822 6.63856 6.68345 6.96538 7.00128 7.48448 7.52673 7.73961 7.83043 7.96708 8.09214 8.44152 9.05449 9.61874 11.12079 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.002794 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.462101 B =10019.074084 C =10661.472899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.095 3.905 5 C -0.173 4.173 6 C -0.093 4.093 7 C -0.079 4.079 8 C 0.124 3.876 9 H 0.045 0.955 10 C -0.132 4.132 11 N -0.684 5.684 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.166 4.166 23 C 0.094 3.906 24 O -0.309 6.309 25 C 0.027 3.973 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.338 0.662 37 H 0.059 0.941 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.025 0.975 41 H 0.260 0.740 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 6.181 -10.570 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.223 6.223 4 C 0.050 3.950 5 C -0.192 4.192 6 C -0.112 4.112 7 C -0.080 4.080 8 C 0.014 3.986 9 H 0.063 0.937 10 C -0.190 4.190 11 N -0.315 5.315 12 C -0.062 4.062 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.186 4.186 23 C 0.049 3.951 24 O -0.223 6.223 25 C -0.069 4.069 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.157 0.843 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.150 0.850 43 H 0.116 0.884 44 H 0.073 0.927 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.854 5.820 -10.982 24.277 hybrid contribution 1.006 0.884 1.112 1.741 sum -19.848 6.705 -9.870 23.159 Atomic orbital electron populations 1.21755 0.92886 1.02664 1.03454 1.22770 0.95791 0.82323 1.01363 1.86138 1.18316 1.28652 1.89198 1.18194 0.82948 0.91159 1.02709 1.21102 0.94077 0.97274 1.06743 1.20878 0.93840 0.97565 0.98912 1.19774 0.95410 0.92590 1.00200 1.20396 0.88103 0.94748 0.95356 0.93718 1.21758 1.01026 1.01810 0.94425 1.60742 1.06077 1.41610 1.23121 1.22209 0.88374 0.97692 0.97940 1.19061 0.94764 0.93960 0.93388 1.21177 1.03887 1.02990 1.27945 0.92794 1.25003 0.98070 0.94915 0.96392 1.69975 1.38279 1.10176 1.34817 0.86592 0.83883 0.78317 0.79184 1.20723 1.21188 1.19895 1.20941 0.90877 0.99907 1.06834 1.18149 0.88807 0.85247 1.02935 1.86144 1.33869 1.12971 1.89322 1.23039 0.99701 0.82795 1.01317 0.90473 0.91567 0.91633 0.92149 0.92041 0.84871 0.84261 0.91940 0.93244 0.92156 0.84338 0.92231 0.96687 0.96849 0.95615 0.93002 0.85004 0.88412 0.92709 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.47 5.46 37.16 0.20 0.68 16 3 O -0.31 -3.97 9.92 -34.23 -0.34 -4.31 16 4 C 0.10 1.28 6.70 -39.12 -0.26 1.02 16 5 C -0.17 -2.12 9.04 -39.46 -0.36 -2.48 16 6 C -0.09 -1.24 9.00 -39.58 -0.36 -1.60 16 7 C -0.08 -1.08 4.71 -104.62 -0.49 -1.57 16 8 C 0.12 1.83 2.81 -68.87 -0.19 1.63 16 9 H 0.04 0.67 7.66 -51.93 -0.40 0.27 16 10 C -0.13 -1.81 9.39 37.16 0.35 -1.46 16 11 N -0.68 -12.08 5.69 -107.96 -0.61 -12.70 16 12 C 0.07 1.38 5.42 -3.82 -0.02 1.36 16 13 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 14 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.17 -2.14 8.66 -39.46 -0.34 -2.48 16 23 C 0.09 1.28 6.70 -39.12 -0.26 1.01 16 24 O -0.31 -4.02 10.28 -34.22 -0.35 -4.37 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 7.67 -51.92 -0.40 0.08 16 30 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 32 H 0.14 1.86 7.71 -52.48 -0.40 1.46 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.86 7.45 -51.93 -0.39 0.48 16 36 H 0.34 5.97 7.99 -39.29 -0.31 5.65 16 37 H 0.06 1.25 7.44 -51.93 -0.39 0.86 16 38 H 0.01 0.31 8.05 -51.93 -0.42 -0.11 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.13 1.45 6.27 -52.48 -0.33 1.12 16 43 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 45 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -32.07 368.54 -8.44 -40.50 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.48 Total: 1.26 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.92 Total: -16.39 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.12 Total: -38.97 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.69 Total: -8.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.07 -8.44 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341478237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.949 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds