Wall clock time and date at job start Tue Mar 31 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.46902 * 2 1 4 4 C 1.35995 * 116.99898 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.07155 * 0.02562 * 4 3 2 6 6 C 1.38243 * 119.99788 * 180.02562 * 5 4 3 7 7 C 1.38249 * 120.14768 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.92353 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46614 * 199.97821 * 8 7 6 10 10 C 1.52995 * 109.47111 * 79.98317 * 8 7 6 11 11 N 1.46892 * 109.47673 * 319.97724 * 8 7 6 12 12 C 1.46897 * 111.00357 * 205.00030 * 11 8 7 13 13 C 1.53002 * 109.47003 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47109 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99933 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00373 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00315 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46914 * 89.99984 * 18 16 14 20 20 H 1.48499 * 109.47108 * 210.00301 * 18 16 14 21 21 H 1.48501 * 109.46731 * 330.00210 * 18 16 14 22 22 C 1.38236 * 120.14650 * 0.02562 * 7 6 5 23 23 C 1.38566 * 120.00196 * 359.97438 * 22 7 6 24 24 O 1.35992 * 120.07720 * 180.02562 * 23 22 7 25 25 C 1.42900 * 116.99608 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46950 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47291 * 299.99656 * 1 2 3 28 28 H 1.09002 * 109.46710 * 59.99872 * 1 2 3 29 29 H 1.09007 * 109.46695 * 240.00316 * 2 1 3 30 30 H 1.08994 * 109.46859 * 120.00412 * 2 1 3 31 31 H 1.08000 * 120.00430 * 359.74911 * 5 4 3 32 32 H 1.08003 * 119.92661 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47370 * 299.99936 * 10 8 7 34 34 H 1.09007 * 109.47306 * 59.99440 * 10 8 7 35 35 H 1.09001 * 109.47446 * 179.97438 * 10 8 7 36 36 H 1.00902 * 111.00365 * 328.95751 * 11 8 7 37 37 H 1.08991 * 109.47261 * 299.99933 * 12 11 8 38 38 H 1.08996 * 109.47223 * 60.00522 * 12 11 8 39 39 H 1.08997 * 109.47662 * 299.99873 * 13 12 11 40 40 H 1.09003 * 109.47081 * 60.00344 * 13 12 11 41 41 H 0.97006 * 119.99731 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.99984 * 179.97438 * 22 7 6 43 43 H 1.09008 * 109.46964 * 179.97438 * 25 24 23 44 44 H 1.08991 * 109.47385 * 299.99975 * 25 24 23 45 45 H 1.09002 * 109.47350 * 60.00319 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2000 0.4277 0.0005 6 6 5.5703 0.6106 0.0016 7 6 6.1004 1.8875 0.0033 8 6 7.5949 2.0810 0.0038 9 1 7.8310 3.0851 0.3562 10 6 8.1332 1.8994 -1.4167 11 7 8.2166 1.0912 0.8934 12 6 9.5128 1.5710 1.3909 13 6 10.1284 0.5151 2.3113 14 6 11.4585 1.0071 2.8211 15 1 11.8276 1.9762 2.5192 16 6 12.2037 0.2206 3.6738 17 7 11.7540 -0.9592 4.0418 18 14 13.8521 0.8307 4.3063 19 1 13.6500 1.5788 5.5731 20 1 14.7473 -0.3281 4.5531 21 1 14.4692 1.7266 3.2955 22 6 5.2625 2.9870 0.0043 23 6 3.8881 2.8107 0.0033 24 8 3.0624 3.8913 0.0038 25 6 3.6803 5.1798 0.0061 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.7886 -0.5709 0.0042 32 1 6.2283 -0.2459 0.0020 33 1 7.8970 0.8954 -1.7692 34 1 7.6719 2.6340 -2.0768 35 1 9.2141 2.0398 -1.4164 36 1 7.6013 0.8545 1.6573 37 1 10.1806 1.7522 0.5488 38 1 9.3684 2.4977 1.9461 39 1 9.4608 0.3334 3.1535 40 1 10.2729 -0.4115 1.7556 41 1 12.2784 -1.5127 4.6415 42 1 5.6791 3.9834 0.0060 43 1 2.9106 5.9518 0.0058 44 1 4.2997 5.2841 0.8967 45 1 4.3016 5.2864 -0.8832 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341478237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:46 Heat of formation + Delta-G solvation = -82.774489 kcal Electronic energy + Delta-G solvation = -23110.937338 eV Core-core repulsion = 19706.880527 eV Total energy + Delta-G solvation = -3404.056810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62760 -39.53316 -39.10601 -37.02193 -35.20862 -33.25755 -32.39388 -31.29584 -30.08871 -29.41174 -28.01814 -26.17647 -24.84121 -24.10883 -22.74040 -22.07698 -21.41009 -19.50386 -18.52518 -18.03039 -17.58510 -17.21456 -16.82571 -16.40901 -16.39173 -15.85118 -15.73511 -15.36949 -15.10581 -14.59748 -14.26436 -14.20325 -14.00347 -13.84271 -13.44318 -13.26725 -13.00257 -12.93894 -12.88112 -12.84297 -12.64983 -12.50552 -12.38500 -12.06514 -11.96758 -11.87443 -11.61705 -11.56837 -11.36946 -11.20338 -10.55689 -9.71006 -9.30387 -8.76889 -8.19621 -6.30885 0.25799 0.40828 1.40670 1.42156 1.53285 2.24680 2.34525 2.40942 2.67498 3.13896 3.30274 3.65568 3.81617 4.04159 4.07624 4.18430 4.24095 4.31060 4.37070 4.38770 4.40545 4.46049 4.49057 4.56118 4.64069 4.69641 4.72212 4.84908 4.88077 4.95579 4.99253 5.08052 5.14103 5.22189 5.32025 5.38246 5.44931 5.58344 5.68809 5.69807 5.81414 6.11355 6.16135 6.30296 6.52977 6.61276 6.86580 7.38286 8.92511 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.002794 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.462101 B =10019.074084 C =10661.472899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.084 3.916 5 C -0.170 4.170 6 C -0.102 4.102 7 C -0.088 4.088 8 C 0.127 3.873 9 H 0.049 0.951 10 C -0.129 4.129 11 N -0.686 5.686 12 C 0.085 3.915 13 C 0.033 3.967 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.263 1.263 22 C -0.164 4.164 23 C 0.082 3.918 24 O -0.328 6.328 25 C 0.018 3.982 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.338 0.662 37 H 0.061 0.939 38 H 0.017 0.983 39 H -0.011 1.011 40 H -0.004 1.004 41 H 0.264 0.736 42 H 0.149 0.851 43 H 0.119 0.881 44 H 0.059 0.941 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.015 7.293 -11.043 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.038 3.962 5 C -0.188 4.188 6 C -0.120 4.120 7 C -0.089 4.089 8 C 0.018 3.982 9 H 0.067 0.933 10 C -0.187 4.187 11 N -0.317 5.317 12 C -0.044 4.044 13 C -0.005 4.005 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.183 4.183 23 C 0.037 3.963 24 O -0.243 6.243 25 C -0.076 4.076 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.008 0.992 40 H 0.014 0.986 41 H 0.072 0.928 42 H 0.167 0.833 43 H 0.137 0.863 44 H 0.077 0.923 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.065 6.946 -11.471 24.971 hybrid contribution 0.948 0.528 1.239 1.647 sum -20.117 7.474 -10.232 23.775 Atomic orbital electron populations 1.21785 0.91448 1.04112 1.03059 1.23078 0.96994 0.80934 1.02196 1.86127 1.17973 1.30932 1.89113 1.18450 0.83514 0.91570 1.02643 1.21271 0.93526 0.98132 1.05913 1.20906 0.94329 0.97367 0.99415 1.19680 0.94670 0.93125 1.01385 1.20417 0.88817 0.93936 0.95078 0.93317 1.21735 1.00543 1.02302 0.94070 1.60661 1.05126 1.42761 1.23167 1.21818 0.89828 0.95831 0.96878 1.18907 0.94224 0.94222 0.93118 1.21619 1.04949 1.03396 1.28243 0.92135 1.25974 1.02280 0.94984 0.96549 1.70111 1.40042 1.11524 1.35505 0.85432 0.78719 0.77959 0.78834 1.19794 1.20736 1.18681 1.21052 0.90601 1.00421 1.06275 1.18371 0.89180 0.85784 1.03013 1.86122 1.34769 1.14095 1.89272 1.23323 1.00772 0.81490 1.02039 0.88085 0.92103 0.91866 0.91032 0.91407 0.82827 0.84750 0.92369 0.91050 0.93021 0.84425 0.92038 0.96454 0.99245 0.98575 0.92766 0.83319 0.86264 0.92261 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.04 0.71 5.46 71.98 0.39 1.10 16 3 O -0.33 -8.18 9.92 -79.63 -0.79 -8.97 16 4 C 0.08 2.20 6.70 22.57 0.15 2.35 16 5 C -0.17 -4.03 9.04 22.35 0.20 -3.83 16 6 C -0.10 -2.65 9.00 22.27 0.20 -2.45 16 7 C -0.09 -2.33 4.71 -19.86 -0.09 -2.42 16 8 C 0.13 3.62 2.81 44.17 0.12 3.75 16 9 H 0.05 1.37 7.66 -2.39 -0.02 1.36 16 10 C -0.13 -3.36 9.39 71.98 0.68 -2.68 16 11 N -0.69 -24.25 5.69 -495.49 -2.82 -27.06 16 12 C 0.09 3.58 5.42 86.30 0.47 4.05 16 13 C 0.03 1.76 5.23 29.85 0.16 1.91 16 14 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 18 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 C -0.16 -4.02 8.66 22.35 0.19 -3.83 16 23 C 0.08 2.16 6.70 22.57 0.15 2.31 16 24 O -0.33 -8.21 10.28 -79.60 -0.82 -9.03 16 25 C 0.02 0.28 9.81 113.37 1.11 1.40 16 26 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 1.02 7.67 -2.38 -0.02 1.00 16 30 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 31 H 0.15 2.85 6.30 -2.91 -0.02 2.83 16 32 H 0.13 3.59 7.71 -2.91 -0.02 3.57 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.05 1.42 7.45 -2.39 -0.02 1.41 16 36 H 0.34 12.05 7.99 -89.69 -0.72 11.33 16 37 H 0.06 2.56 7.44 -2.39 -0.02 2.54 16 38 H 0.02 0.72 8.05 -2.39 -0.02 0.70 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.26 15.17 8.31 -92.70 -0.77 14.39 16 42 H 0.15 3.00 6.27 -2.91 -0.02 2.98 16 43 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 45 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 Total: -1.00 -69.01 368.54 3.31 -65.70 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.25 Total: 19.77 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 5.17 Total: -29.91 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -2.53 Total: -83.99 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.61 Total: -18.00 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.01 3.31 -65.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341478237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.073 kcal (2) G-P(sol) polarization free energy of solvation -69.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds