Wall clock time and date at job start Tue Mar 31 2020 06:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 111.00067 * 2 1 4 4 C 1.53005 * 109.47006 * 66.04502 * 3 2 1 5 5 C 1.53001 * 109.47158 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47168 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00062 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99852 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00372 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99986 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47376 * 59.99466 * 10 8 6 12 12 H 1.48500 * 109.47498 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47142 * 299.99814 * 10 8 6 14 14 C 1.46898 * 111.00198 * 236.04100 * 2 1 3 15 15 C 1.53002 * 109.47288 * 187.39552 * 14 2 1 16 16 C 1.53007 * 109.46722 * 60.00386 * 15 14 2 17 17 C 1.53000 * 109.47006 * 60.00016 * 16 15 14 18 18 C 1.53001 * 109.47076 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.46626 * 59.99969 * 18 17 16 20 20 F 1.39889 * 109.47374 * 180.02562 * 18 17 16 21 21 F 1.39902 * 109.47153 * 300.00506 * 18 17 16 22 22 C 1.52997 * 109.47054 * 299.99984 * 17 16 15 23 23 C 1.52996 * 109.47558 * 60.00225 * 22 17 16 24 24 H 1.09000 * 109.47243 * 189.59888 * 1 2 3 25 25 H 1.08989 * 109.47659 * 309.60591 * 1 2 3 26 26 H 1.09003 * 109.46715 * 69.60822 * 1 2 3 27 27 H 1.09002 * 109.47234 * 186.03915 * 3 2 1 28 28 H 1.08995 * 109.47389 * 306.04307 * 3 2 1 29 29 H 1.09002 * 109.46644 * 299.99773 * 4 3 2 30 30 H 1.08995 * 109.47206 * 59.99693 * 4 3 2 31 31 H 1.09000 * 109.47051 * 300.00206 * 5 4 3 32 32 H 1.09006 * 109.47038 * 59.99431 * 5 4 3 33 33 H 0.97000 * 120.00268 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46753 * 67.40182 * 14 2 1 35 35 H 1.08998 * 109.46978 * 300.00547 * 15 14 2 36 36 H 1.08996 * 109.47163 * 180.02562 * 15 14 2 37 37 H 1.09004 * 109.46775 * 180.02562 * 16 15 14 38 38 H 1.08996 * 109.47172 * 299.99836 * 16 15 14 39 39 H 1.09006 * 109.47129 * 59.99862 * 17 16 15 40 40 H 1.08993 * 109.47138 * 299.99599 * 22 17 16 41 41 H 1.09008 * 109.46562 * 180.02562 * 22 17 16 42 42 H 1.08989 * 109.47586 * 179.97438 * 23 22 17 43 43 H 1.09006 * 109.47184 * 59.99779 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4860 1.3181 6 6 1.8212 4.1615 2.6167 7 1 1.2588 3.6256 3.3670 8 6 2.2107 5.4639 2.8466 9 7 2.8950 6.1167 1.9328 10 14 1.7663 6.3015 4.4561 11 1 2.3589 5.5447 5.5881 12 1 2.2980 7.6880 4.4559 13 1 0.2891 6.3374 4.6041 14 6 1.9955 -0.7661 -1.1375 15 6 3.5137 -0.8997 -1.0035 16 6 3.8485 -1.6274 0.3002 17 6 3.2134 -3.0192 0.2848 18 6 3.5486 -3.7472 1.5881 19 9 3.0476 -3.0178 2.6717 20 9 2.9684 -5.0200 1.5739 21 9 4.9370 -3.8693 1.7103 22 6 1.6952 -2.8856 0.1507 23 6 1.3603 -2.1579 -1.1528 24 1 -0.3634 -1.0133 0.1714 25 1 -0.3634 0.6550 0.7917 26 1 -0.3633 0.3581 -0.9633 27 1 3.0797 1.3444 -0.1081 28 1 1.5612 1.9273 -0.8309 29 1 0.5471 2.0844 1.4264 30 1 2.0656 1.5015 2.1492 31 1 3.2634 3.4594 1.2096 32 1 1.7445 4.0417 0.4871 33 1 3.1693 7.0329 2.0946 34 1 1.7570 -0.2476 -2.0662 35 1 3.9661 0.0919 -0.9926 36 1 3.9044 -1.4677 -1.8477 37 1 4.9302 -1.7222 0.3959 38 1 3.4579 -1.0590 1.1442 39 1 3.6040 -3.5876 -0.5593 40 1 1.3045 -2.3173 0.9948 41 1 1.2427 -3.8772 0.1403 42 1 0.2788 -2.0631 -1.2486 43 1 1.7510 -2.7263 -1.9969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344164740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:29 Heat of formation + Delta-G solvation = -195.777604 kcal Electronic energy + Delta-G solvation = -24971.922481 eV Core-core repulsion = 21021.108747 eV Total energy + Delta-G solvation = -3950.813733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.03361 -48.53118 -48.49897 -40.58890 -37.27910 -35.48358 -33.43259 -32.06359 -31.31912 -28.52834 -27.08798 -25.91511 -24.06746 -23.52312 -22.35415 -21.57454 -20.10506 -19.17200 -19.06818 -18.49046 -18.42633 -16.81284 -16.67955 -16.36880 -16.04641 -15.49834 -15.43465 -15.35582 -14.95787 -14.68735 -14.68146 -14.56734 -14.48262 -14.35274 -14.14927 -13.67289 -13.29076 -13.24903 -13.12531 -12.84732 -12.81575 -12.63631 -12.49566 -12.33216 -12.13486 -11.90940 -11.72820 -11.42860 -11.36236 -11.17652 -11.04190 -10.86457 -10.53673 -9.11241 -8.19600 -6.30354 1.39573 1.42626 1.50522 1.88478 2.41086 2.88335 3.07362 3.09218 3.13454 3.17545 3.75455 3.84124 4.08986 4.16695 4.23274 4.26186 4.35786 4.41470 4.47040 4.59573 4.65562 4.70476 4.75690 4.80442 4.89669 4.97941 5.05008 5.10766 5.13875 5.15312 5.26136 5.29418 5.32526 5.36341 5.50308 5.55556 5.77086 5.87583 6.17627 6.29634 6.34703 6.86328 7.38758 8.92058 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.003624 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.875085 B = 7723.578896 C = 8375.280632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.066 3.934 4 C -0.088 4.088 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.075 3.925 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.116 4.116 18 C 0.448 3.552 19 F -0.193 7.193 20 F -0.188 7.188 21 F -0.193 7.193 22 C -0.110 4.110 23 C -0.101 4.101 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.020 0.980 29 H 0.048 0.952 30 H 0.047 0.953 31 H -0.009 1.009 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.134 0.866 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -22.667 -8.145 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.061 4.061 4 C -0.126 4.126 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.033 4.033 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.135 4.135 18 C 0.394 3.606 19 F -0.175 7.175 20 F -0.170 7.170 21 F -0.174 7.174 22 C -0.147 4.147 23 C -0.139 4.139 24 H 0.105 0.895 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.009 0.991 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.152 0.848 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.925 -22.765 -7.727 24.058 hybrid contribution -0.165 1.293 0.458 1.381 sum -1.090 -21.472 -7.268 22.695 Atomic orbital electron populations 1.22482 0.87381 1.02804 1.00126 1.62054 1.08037 1.12699 1.43270 1.22027 0.99848 0.87977 0.96283 1.21386 0.99571 0.95110 0.96546 1.18956 0.94589 0.92327 0.95175 1.21659 1.35015 0.98318 1.03109 0.92514 1.25950 0.94938 0.98253 1.00524 1.70081 1.39331 1.11748 1.36178 0.85541 0.78929 0.77363 0.79464 1.19328 1.20680 1.19165 1.21793 0.95312 0.94881 0.91268 1.21561 0.94640 1.00669 0.97477 1.21427 1.00029 0.93247 1.00081 1.22474 1.00578 0.97927 0.92526 1.21052 0.73739 0.77442 0.88330 1.93175 1.87401 1.77515 1.59365 1.93147 1.84414 1.42496 1.96932 1.93152 1.31448 1.96054 1.96750 1.21493 0.91552 1.01586 1.00111 1.21568 1.01357 0.93527 0.97408 0.89523 0.92538 0.95594 0.91122 0.96198 0.93324 0.93397 0.99096 0.99275 0.92774 0.93970 0.92317 0.88874 0.91143 0.91734 0.84832 0.91271 0.90016 0.90388 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.55 127.69 1.09 1.57 16 2 N -0.54 -14.07 3.12 -897.06 -2.80 -16.87 16 3 C 0.07 2.24 4.81 86.31 0.42 2.65 16 4 C -0.09 -3.71 5.10 30.60 0.16 -3.56 16 5 C 0.03 1.46 4.97 29.85 0.15 1.61 16 6 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 7 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 8 C 0.00 0.06 5.46 84.66 0.46 0.52 16 9 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 10 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 14 C 0.08 1.49 2.26 44.92 0.10 1.59 16 15 C -0.11 -2.00 5.20 30.60 0.16 -1.84 16 16 C -0.11 -2.26 4.80 30.60 0.15 -2.11 16 17 C -0.12 -1.93 2.16 -10.79 -0.02 -1.96 16 18 C 0.45 9.43 2.69 71.98 0.19 9.62 16 19 F -0.19 -5.04 16.28 44.97 0.73 -4.31 16 20 F -0.19 -3.86 16.80 44.97 0.76 -3.11 16 21 F -0.19 -4.33 16.80 44.97 0.76 -3.58 16 22 C -0.11 -1.78 4.66 30.59 0.14 -1.63 16 23 C -0.10 -1.43 4.90 30.59 0.15 -1.28 16 24 H 0.09 1.68 6.08 -2.39 -0.01 1.67 16 25 H 0.06 1.57 6.10 -2.39 -0.01 1.56 16 26 H 0.03 0.59 8.13 -2.39 -0.02 0.57 16 27 H 0.07 2.40 5.96 -2.39 -0.01 2.38 16 28 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 29 H 0.05 2.01 6.37 -2.39 -0.02 2.00 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.32 6.28 -2.39 -0.02 1.31 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.39 7.80 -2.39 -0.02 1.37 16 38 H 0.06 1.74 7.26 -2.39 -0.02 1.72 16 39 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.07 1.46 6.75 -2.39 -0.02 1.45 16 41 H 0.08 1.10 7.80 -2.38 -0.02 1.08 16 42 H 0.08 1.05 6.45 -2.39 -0.02 1.03 16 43 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -65.44 337.98 6.12 -59.32 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 0.99 Total: 5.00 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 3.38 Total: -26.24 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -2.52 Total: -74.10 kcal Atomic # 9 Polarization: -13.24 SS G_CDS: 2.24 Total: -11.00 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.44 6.12 -59.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344164740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.460 kcal (2) G-P(sol) polarization free energy of solvation -65.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds