Wall clock time and date at job start Tue Mar 31 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46741 * 2 1 4 4 C 1.46897 * 111.00548 * 302.03193 * 3 2 1 5 5 C 1.50703 * 109.47233 * 296.28062 * 4 3 2 6 6 H 1.07999 * 119.99754 * 4.49450 * 5 4 3 7 7 C 1.37872 * 119.99846 * 184.49522 * 5 4 3 8 8 N 1.31517 * 120.00239 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99851 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47150 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46931 * 120.00079 * 9 7 5 12 12 H 1.48501 * 109.47563 * 239.99991 * 9 7 5 13 13 C 1.46905 * 110.99649 * 65.99152 * 3 2 1 14 14 C 1.52997 * 109.47245 * 75.66128 * 13 3 2 15 15 C 1.53005 * 109.46743 * 183.72132 * 14 13 3 16 16 C 1.52995 * 109.46981 * 299.99394 * 15 14 13 17 17 C 1.52995 * 109.47637 * 300.00375 * 16 15 14 18 18 C 1.52995 * 109.47637 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.47233 * 299.99992 * 18 17 16 20 20 F 1.39901 * 109.47293 * 59.99963 * 18 17 16 21 21 F 1.39903 * 109.47529 * 179.97438 * 18 17 16 22 22 C 1.53005 * 109.47241 * 59.99784 * 17 16 15 23 23 C 1.52989 * 109.47407 * 63.71862 * 14 13 3 24 24 H 1.09007 * 109.47596 * 64.79215 * 1 2 3 25 25 H 1.09009 * 109.47226 * 184.78251 * 1 2 3 26 26 H 1.08995 * 109.47763 * 304.78398 * 1 2 3 27 27 H 1.09006 * 109.47065 * 240.00487 * 2 1 3 28 28 H 1.08992 * 109.47102 * 120.00004 * 2 1 3 29 29 H 1.09007 * 109.46870 * 56.27596 * 4 3 2 30 30 H 1.08999 * 109.47414 * 176.27325 * 4 3 2 31 31 H 0.96998 * 119.99911 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.46756 * 195.66021 * 13 3 2 33 33 H 1.09002 * 109.46886 * 315.65298 * 13 3 2 34 34 H 1.08995 * 109.46820 * 303.71263 * 14 13 3 35 35 H 1.08998 * 109.47433 * 59.99566 * 15 14 13 36 36 H 1.08998 * 109.47025 * 179.97438 * 15 14 13 37 37 H 1.09004 * 109.47311 * 180.02562 * 16 15 14 38 38 H 1.09009 * 109.47240 * 60.00503 * 16 15 14 39 39 H 1.09007 * 109.47261 * 299.99935 * 17 16 15 40 40 H 1.08998 * 109.47433 * 180.02562 * 22 17 16 41 41 H 1.08998 * 109.47025 * 60.00085 * 22 17 16 42 42 H 1.08998 * 109.47206 * 179.97438 * 23 14 13 43 43 H 1.09002 * 109.47483 * 300.00032 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5093 2.1239 -1.1626 5 6 2.0445 1.5028 -2.4270 6 1 2.6388 0.6024 -2.3767 7 6 1.7756 2.0840 -3.6480 8 7 1.0523 3.1808 -3.7091 9 14 2.4396 1.3145 -5.2152 10 1 3.2178 0.0958 -4.8771 11 1 1.3082 0.9480 -6.1046 12 1 3.3202 2.2877 -5.9100 13 6 1.6689 2.0673 1.2529 14 6 2.5905 1.5816 2.3733 15 6 2.1659 2.2220 3.6965 16 6 2.2628 3.7445 3.5803 17 6 3.7058 4.1409 3.2617 18 6 3.8026 5.6633 3.1450 19 9 2.9600 6.1070 2.1201 20 9 3.4142 6.2495 4.3545 21 9 5.1222 6.0259 2.8542 22 6 4.1304 3.5005 1.9386 23 6 4.0334 1.9779 2.0548 24 1 -0.3634 0.4377 -0.9298 25 1 -0.3634 -1.0242 0.0857 26 1 -0.3634 0.5862 0.8440 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 0.4200 2.0820 -1.1701 30 1 1.8325 3.1631 -1.1031 31 1 0.8634 3.5898 -4.5681 32 1 1.7871 3.1434 1.1259 33 1 0.6337 1.8435 1.5110 34 1 2.5214 0.4970 2.4561 35 1 1.1379 1.9397 3.9234 36 1 2.8221 1.8757 4.4948 37 1 1.9608 4.2008 4.5231 38 1 1.6062 4.0906 2.7820 39 1 4.3624 3.7949 4.0601 40 1 5.1585 3.7825 1.7118 41 1 3.4738 3.8465 1.1403 42 1 4.6899 1.6323 2.8533 43 1 4.3359 1.5217 1.1121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344473200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:40 Heat of formation + Delta-G solvation = -177.673277 kcal Electronic energy + Delta-G solvation = -25501.357770 eV Core-core repulsion = 21551.329099 eV Total energy + Delta-G solvation = -3950.028671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.166 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.04083 -47.54897 -47.47258 -39.35484 -36.63815 -32.76401 -31.95746 -30.76439 -29.28819 -27.41840 -25.53044 -24.28799 -23.07869 -22.63765 -21.51416 -19.92232 -18.56716 -18.18404 -17.67694 -17.41036 -16.17449 -15.85290 -15.16689 -14.71374 -14.49575 -14.43864 -13.99974 -13.95187 -13.83951 -13.68274 -13.65260 -13.57082 -13.34412 -12.88027 -12.49900 -12.28891 -12.10029 -11.95006 -11.80228 -11.51439 -11.23400 -11.10066 -10.95772 -10.84300 -10.66658 -10.53519 -10.19485 -10.11845 -9.98453 -9.84836 -9.55234 -9.08944 -8.41540 -7.11705 -6.00472 -4.01060 2.82997 3.31641 3.39461 3.43488 3.84051 4.03915 4.10207 4.44024 4.73577 4.75322 4.92783 5.06738 5.21805 5.26963 5.34513 5.37573 5.49601 5.54769 5.62103 5.80674 5.85043 5.92039 5.96533 6.00569 6.07082 6.10784 6.18384 6.24057 6.37776 6.43627 6.53030 6.69664 6.71116 6.76501 6.95087 7.37552 7.44833 7.83308 8.13682 8.27148 8.60512 9.06734 9.63017 11.10469 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.004711 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.385560 B = 5942.659506 C = 6866.379108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.061 3.939 3 N -0.531 5.531 4 C 0.190 3.810 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.049 3.951 14 C -0.084 4.084 15 C -0.108 4.108 16 C -0.120 4.120 17 C -0.128 4.128 18 C 0.450 3.550 19 F -0.179 7.179 20 F -0.190 7.190 21 F -0.186 7.186 22 C -0.120 4.120 23 C -0.097 4.097 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.050 0.950 29 H -0.007 1.007 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 0.024 16.681 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.067 4.067 3 N -0.254 5.254 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.079 4.079 14 C -0.103 4.103 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.147 4.147 18 C 0.396 3.604 19 F -0.160 7.160 20 F -0.172 7.172 21 F -0.168 7.168 22 C -0.157 4.157 23 C -0.134 4.134 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.011 0.989 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.209 0.187 16.498 17.028 hybrid contribution -0.624 0.129 -0.889 1.093 sum 3.585 0.316 15.610 16.019 Atomic orbital electron populations 1.22375 0.99566 1.00411 1.02293 1.21963 0.92037 0.91810 1.00918 1.62304 1.59239 1.01793 1.02094 1.19767 0.93453 0.93729 0.86547 1.21188 1.32017 1.10624 0.90300 0.91967 1.24971 0.95449 0.95032 0.99152 1.69966 1.39076 1.19623 1.25170 0.86504 0.78637 0.79285 0.83347 1.19723 1.21235 1.21086 1.22260 0.95758 0.98991 0.90919 1.21159 0.95751 0.99863 0.93558 1.21503 1.01575 0.93584 0.97888 1.21639 0.93563 0.97908 1.02670 1.22533 1.01721 0.87151 1.03311 1.20801 0.73387 0.92850 0.73366 1.93204 1.71454 1.91325 1.60017 1.93147 1.91051 1.86900 1.46058 1.93163 1.36717 1.93514 1.93392 1.21663 1.02379 0.97289 0.94389 1.21340 0.95779 0.93656 1.02628 0.91250 0.93772 0.93699 0.90418 0.93205 0.98912 0.95277 0.93066 0.91223 0.95421 0.91114 0.91558 0.91897 0.91225 0.90140 0.87382 0.91165 0.89498 0.93082 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 9.19 37.16 0.34 -2.96 16 2 C 0.06 1.12 5.71 -3.83 -0.02 1.10 16 3 N -0.53 -10.57 4.05 -236.07 -0.96 -11.53 16 4 C 0.19 4.75 4.37 -4.98 -0.02 4.73 16 5 C -0.50 -13.70 8.61 -34.44 -0.30 -14.00 16 6 H 0.06 1.68 6.77 -52.49 -0.36 1.33 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.05 0.81 3.58 -3.82 -0.01 0.80 16 14 C -0.08 -1.09 2.71 -90.62 -0.25 -1.34 16 15 C -0.11 -1.13 5.45 -26.73 -0.15 -1.27 16 16 C -0.12 -1.31 4.69 -26.74 -0.13 -1.44 16 17 C -0.13 -1.43 2.17 -90.62 -0.20 -1.62 16 18 C 0.45 5.71 2.69 37.16 0.10 5.81 16 19 F -0.18 -2.64 16.28 2.25 0.04 -2.60 16 20 F -0.19 -2.35 16.80 2.25 0.04 -2.31 16 21 F -0.19 -2.47 16.80 2.25 0.04 -2.44 16 22 C -0.12 -1.57 4.69 -26.73 -0.13 -1.69 16 23 C -0.10 -1.25 5.33 -26.73 -0.14 -1.39 16 24 H 0.07 1.43 6.56 -51.93 -0.34 1.09 16 25 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.04 0.74 6.11 -51.93 -0.32 0.43 16 27 H 0.08 1.56 6.68 -51.93 -0.35 1.21 16 28 H 0.05 0.79 6.65 -51.93 -0.35 0.44 16 29 H -0.01 -0.18 6.17 -51.93 -0.32 -0.50 16 30 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.07 1.22 4.45 -51.93 -0.23 0.99 16 33 H 0.03 0.46 5.87 -51.93 -0.30 0.15 16 34 H 0.07 0.92 6.72 -51.93 -0.35 0.57 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 38 H 0.08 1.01 6.17 -51.92 -0.32 0.69 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 41 H 0.09 1.38 6.01 -51.93 -0.31 1.07 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.36 7.71 -51.93 -0.40 0.96 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -28.53 331.10 -7.54 -36.07 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.41 Total: -1.04 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.99 Total: -11.84 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.22 Total: -37.31 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.11 Total: -7.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.53 -7.54 -36.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344473200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.600 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds