Wall clock time and date at job start Tue Mar 31 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46741 * 2 1 4 4 C 1.46897 * 111.00548 * 302.03193 * 3 2 1 5 5 C 1.50703 * 109.47233 * 296.28062 * 4 3 2 6 6 H 1.07999 * 119.99754 * 4.49450 * 5 4 3 7 7 C 1.37872 * 119.99846 * 184.49522 * 5 4 3 8 8 N 1.31517 * 120.00239 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99851 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47150 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46931 * 120.00079 * 9 7 5 12 12 H 1.48501 * 109.47563 * 239.99991 * 9 7 5 13 13 C 1.46905 * 110.99649 * 65.99152 * 3 2 1 14 14 C 1.52997 * 109.47245 * 75.66128 * 13 3 2 15 15 C 1.53005 * 109.46743 * 183.72132 * 14 13 3 16 16 C 1.52995 * 109.46981 * 299.99394 * 15 14 13 17 17 C 1.52995 * 109.47637 * 300.00375 * 16 15 14 18 18 C 1.52995 * 109.47637 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.47233 * 299.99992 * 18 17 16 20 20 F 1.39901 * 109.47293 * 59.99963 * 18 17 16 21 21 F 1.39903 * 109.47529 * 179.97438 * 18 17 16 22 22 C 1.53005 * 109.47241 * 59.99784 * 17 16 15 23 23 C 1.52989 * 109.47407 * 63.71862 * 14 13 3 24 24 H 1.09007 * 109.47596 * 64.79215 * 1 2 3 25 25 H 1.09009 * 109.47226 * 184.78251 * 1 2 3 26 26 H 1.08995 * 109.47763 * 304.78398 * 1 2 3 27 27 H 1.09006 * 109.47065 * 240.00487 * 2 1 3 28 28 H 1.08992 * 109.47102 * 120.00004 * 2 1 3 29 29 H 1.09007 * 109.46870 * 56.27596 * 4 3 2 30 30 H 1.08999 * 109.47414 * 176.27325 * 4 3 2 31 31 H 0.96998 * 119.99911 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.46756 * 195.66021 * 13 3 2 33 33 H 1.09002 * 109.46886 * 315.65298 * 13 3 2 34 34 H 1.08995 * 109.46820 * 303.71263 * 14 13 3 35 35 H 1.08998 * 109.47433 * 59.99566 * 15 14 13 36 36 H 1.08998 * 109.47025 * 179.97438 * 15 14 13 37 37 H 1.09004 * 109.47311 * 180.02562 * 16 15 14 38 38 H 1.09009 * 109.47240 * 60.00503 * 16 15 14 39 39 H 1.09007 * 109.47261 * 299.99935 * 17 16 15 40 40 H 1.08998 * 109.47433 * 180.02562 * 22 17 16 41 41 H 1.08998 * 109.47025 * 60.00085 * 22 17 16 42 42 H 1.08998 * 109.47206 * 179.97438 * 23 14 13 43 43 H 1.09002 * 109.47483 * 300.00032 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5093 2.1239 -1.1626 5 6 2.0445 1.5028 -2.4270 6 1 2.6388 0.6024 -2.3767 7 6 1.7756 2.0840 -3.6480 8 7 1.0523 3.1808 -3.7091 9 14 2.4396 1.3145 -5.2152 10 1 3.2178 0.0958 -4.8771 11 1 1.3082 0.9480 -6.1046 12 1 3.3202 2.2877 -5.9100 13 6 1.6689 2.0673 1.2529 14 6 2.5905 1.5816 2.3733 15 6 2.1659 2.2220 3.6965 16 6 2.2628 3.7445 3.5803 17 6 3.7058 4.1409 3.2617 18 6 3.8026 5.6633 3.1450 19 9 2.9600 6.1070 2.1201 20 9 3.4142 6.2495 4.3545 21 9 5.1222 6.0259 2.8542 22 6 4.1304 3.5005 1.9386 23 6 4.0334 1.9779 2.0548 24 1 -0.3634 0.4377 -0.9298 25 1 -0.3634 -1.0242 0.0857 26 1 -0.3634 0.5862 0.8440 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 0.4200 2.0820 -1.1701 30 1 1.8325 3.1631 -1.1031 31 1 0.8634 3.5898 -4.5681 32 1 1.7871 3.1434 1.1259 33 1 0.6337 1.8435 1.5110 34 1 2.5214 0.4970 2.4561 35 1 1.1379 1.9397 3.9234 36 1 2.8221 1.8757 4.4948 37 1 1.9608 4.2008 4.5231 38 1 1.6062 4.0906 2.7820 39 1 4.3624 3.7949 4.0601 40 1 5.1585 3.7825 1.7118 41 1 3.4738 3.8465 1.1403 42 1 4.6899 1.6323 2.8533 43 1 4.3359 1.5217 1.1121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344473200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:40 Heat of formation + Delta-G solvation = -193.181683 kcal Electronic energy + Delta-G solvation = -25502.030265 eV Core-core repulsion = 21551.329099 eV Total energy + Delta-G solvation = -3950.701166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.08765 -48.57236 -48.56456 -40.49095 -38.10981 -34.74714 -33.17933 -31.72452 -30.88913 -29.13067 -26.84556 -25.64364 -24.88330 -23.60007 -22.58394 -21.42005 -19.69741 -19.21657 -18.79022 -18.45263 -18.27783 -17.17437 -16.62659 -16.39533 -15.73476 -15.56465 -15.24145 -15.11699 -15.00280 -14.88656 -14.73501 -14.72377 -14.39595 -14.33966 -14.11754 -13.51159 -13.35447 -13.21363 -13.06654 -13.03372 -12.68861 -12.59097 -12.53906 -12.40815 -12.07135 -11.90345 -11.85717 -11.56087 -11.21371 -11.01750 -10.99341 -10.80113 -10.57805 -8.78508 -8.17019 -6.25568 1.40025 1.41113 1.53908 1.83566 2.41601 2.85835 3.04799 3.11342 3.15644 3.45208 3.79241 3.83932 3.99529 4.21922 4.25974 4.34195 4.37085 4.48439 4.49643 4.59007 4.62176 4.70451 4.76103 4.83115 4.98835 5.03301 5.04306 5.08192 5.14060 5.28516 5.29687 5.36302 5.36965 5.47321 5.55303 5.58988 5.65934 5.72661 6.12591 6.48337 6.79443 6.92804 7.43924 8.94207 Molecular weight = 293.17amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.004711 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.385560 B = 5942.659506 C = 6866.379108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 N -0.534 5.534 4 C 0.209 3.791 5 C -0.512 4.512 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.937 5.937 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.051 3.949 14 C -0.077 4.077 15 C -0.099 4.099 16 C -0.121 4.121 17 C -0.118 4.118 18 C 0.446 3.554 19 F -0.197 7.197 20 F -0.186 7.186 21 F -0.191 7.191 22 C -0.118 4.118 23 C -0.093 4.093 24 H 0.028 0.972 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.086 0.914 29 H -0.032 1.032 30 H -0.008 1.008 31 H 0.261 0.739 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.141 0.859 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -1.802 18.828 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.067 4.067 3 N -0.257 5.257 4 C 0.082 3.918 5 C -0.550 4.550 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.579 5.579 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.208 1.208 13 C -0.077 4.077 14 C -0.096 4.096 15 C -0.137 4.137 16 C -0.158 4.158 17 C -0.137 4.137 18 C 0.393 3.607 19 F -0.179 7.179 20 F -0.167 7.167 21 F -0.172 7.172 22 C -0.156 4.156 23 C -0.130 4.130 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.105 0.895 29 H -0.014 1.014 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.159 0.841 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.178 -1.654 18.667 19.442 hybrid contribution -0.934 0.738 -1.513 1.925 sum 4.244 -0.916 17.153 17.694 Atomic orbital electron populations 1.22267 0.98989 1.01956 1.00524 1.22011 0.92504 0.90557 1.01620 1.62208 1.59165 1.02486 1.01861 1.19344 0.91664 0.92290 0.88480 1.21513 1.31597 1.10540 0.91400 0.91883 1.25873 0.95702 0.95472 1.02761 1.70104 1.40538 1.21172 1.26049 0.85415 0.78077 0.78647 0.78965 1.18528 1.20666 1.20791 1.22338 0.96953 0.97909 0.90526 1.21132 0.94671 1.00507 0.93292 1.21479 1.02855 0.92523 0.96827 1.21660 0.92764 0.98719 1.02697 1.22542 1.02673 0.85530 1.02917 1.21106 0.72870 0.93791 0.72967 1.93173 1.72069 1.91638 1.61012 1.93151 1.90991 1.86984 1.45600 1.93152 1.36970 1.93662 1.93445 1.21572 1.01562 0.97925 0.94521 1.21298 0.96387 0.92926 1.02380 0.95272 0.90937 0.92721 0.92530 0.89544 1.01444 0.98978 0.92983 0.93084 0.95357 0.90083 0.90670 0.88806 0.89269 0.92681 0.84071 0.91031 0.93378 0.89734 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.19 9.19 71.98 0.66 -5.53 16 2 C 0.06 2.19 5.71 86.30 0.49 2.68 16 3 N -0.53 -21.74 4.05 -900.79 -3.65 -25.39 16 4 C 0.21 11.02 4.37 85.56 0.37 11.39 16 5 C -0.51 -28.86 8.61 25.60 0.22 -28.64 16 6 H 0.06 3.47 6.77 -2.91 -0.02 3.45 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.05 1.68 3.58 86.30 0.31 1.99 16 14 C -0.08 -1.81 2.71 -10.80 -0.03 -1.84 16 15 C -0.10 -1.70 5.45 30.59 0.17 -1.54 16 16 C -0.12 -2.38 4.69 30.59 0.14 -2.23 16 17 C -0.12 -2.39 2.17 -10.80 -0.02 -2.42 16 18 C 0.45 10.99 2.69 71.98 0.19 11.18 16 19 F -0.20 -6.05 16.28 44.97 0.73 -5.32 16 20 F -0.19 -4.30 16.80 44.97 0.76 -3.55 16 21 F -0.19 -4.93 16.80 44.97 0.76 -4.18 16 22 C -0.12 -3.05 4.69 30.60 0.14 -2.90 16 23 C -0.09 -2.21 5.33 30.59 0.16 -2.05 16 24 H 0.03 1.22 6.56 -2.38 -0.02 1.21 16 25 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.05 1.76 6.11 -2.39 -0.01 1.75 16 27 H 0.06 2.26 6.68 -2.38 -0.02 2.25 16 28 H 0.09 2.49 6.65 -2.39 -0.02 2.47 16 29 H -0.03 -1.82 6.17 -2.38 -0.01 -1.84 16 30 H -0.01 -0.47 7.89 -2.39 -0.02 -0.49 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.05 1.89 4.45 -2.39 -0.01 1.88 16 33 H 0.03 0.93 5.87 -2.39 -0.01 0.92 16 34 H 0.08 1.79 6.72 -2.39 -0.02 1.77 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.44 7.80 -2.39 -0.02 1.42 16 38 H 0.05 1.38 6.17 -2.38 -0.01 1.36 16 39 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.07 1.78 7.80 -2.39 -0.02 1.77 16 41 H 0.05 1.62 6.01 -2.39 -0.01 1.60 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.81 7.71 -2.39 -0.02 1.79 16 Total: -1.00 -65.07 331.10 5.20 -59.88 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.01 Total: 8.35 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 3.28 Total: -19.49 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -3.36 Total: -82.55 kcal Atomic # 9 Polarization: -15.29 SS G_CDS: 2.24 Total: -13.04 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.07 5.20 -59.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344473200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.306 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds