Wall clock time and date at job start Tue Mar 31 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46899 * 109.46776 * 2 1 4 4 C 1.46903 * 110.99559 * 299.34888 * 3 2 1 5 5 C 1.50701 * 109.47399 * 288.74553 * 4 3 2 6 6 H 1.08000 * 119.99932 * 1.49764 * 5 4 3 7 7 C 1.37878 * 119.99827 * 181.49461 * 5 4 3 8 8 N 1.31517 * 119.99359 * 180.02562 * 7 5 4 9 9 Si 1.86788 * 120.00255 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47454 * 89.99600 * 9 7 5 11 11 H 1.48502 * 109.47432 * 209.99766 * 9 7 5 12 12 H 1.48498 * 109.47291 * 329.99728 * 9 7 5 13 13 C 1.46895 * 111.00129 * 63.30298 * 3 2 1 14 14 C 1.50699 * 109.47180 * 66.05075 * 13 3 2 15 15 C 1.38257 * 119.92368 * 259.99963 * 14 13 3 16 16 C 1.38237 * 120.14580 * 180.25246 * 15 14 13 17 17 C 1.38563 * 119.99986 * 359.48845 * 16 15 14 18 18 O 1.35996 * 120.07455 * 180.25183 * 17 16 15 19 19 C 1.42897 * 116.99922 * 0.27993 * 18 17 16 20 20 C 1.39155 * 119.85477 * 0.53364 * 17 16 15 21 21 O 1.35987 * 120.07538 * 179.70564 * 20 17 16 22 22 C 1.42902 * 116.99626 * 270.01618 * 21 20 17 23 23 C 1.38241 * 119.92916 * 80.01696 * 14 13 3 24 24 C 1.50697 * 120.00096 * 359.97438 * 23 14 13 25 25 H 1.08996 * 109.47093 * 62.47351 * 1 2 3 26 26 H 1.08999 * 109.46763 * 182.47138 * 1 2 3 27 27 H 1.09000 * 109.46993 * 302.46696 * 1 2 3 28 28 H 1.08997 * 109.47054 * 240.00101 * 2 1 3 29 29 H 1.09002 * 109.46911 * 119.99392 * 2 1 3 30 30 H 1.08999 * 109.47584 * 48.75445 * 4 3 2 31 31 H 1.09004 * 109.46695 * 168.74611 * 4 3 2 32 32 H 0.97006 * 119.99781 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47557 * 306.04189 * 13 3 2 34 34 H 1.09007 * 109.46874 * 186.04729 * 13 3 2 35 35 H 1.08005 * 119.92531 * 359.97438 * 15 14 13 36 36 H 1.08008 * 120.00121 * 179.74192 * 16 15 14 37 37 H 1.09000 * 109.47307 * 299.99360 * 19 18 17 38 38 H 1.09000 * 109.47335 * 59.99841 * 19 18 17 39 39 H 1.09002 * 109.47464 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47308 * 300.00065 * 22 21 20 41 41 H 1.08997 * 109.47313 * 60.00201 * 22 21 20 42 42 H 1.09008 * 109.47087 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47048 * 89.99960 * 24 23 14 44 44 H 1.09001 * 109.47131 * 209.99529 * 24 23 14 45 45 H 1.09000 * 109.47289 * 330.00092 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5613 2.1053 -1.1955 5 6 2.2926 1.5856 -2.4064 6 1 3.0070 0.7824 -2.3022 7 6 2.0495 2.1355 -3.6471 8 7 2.6874 1.6816 -4.7039 9 14 0.8144 3.5252 -3.8271 10 1 1.5072 4.8281 -3.6604 11 1 0.1931 3.4639 -5.1745 12 1 -0.2392 3.3886 -2.7896 13 6 1.6142 2.0867 1.2252 14 6 2.3023 1.4634 2.4122 15 6 1.6199 0.5652 3.2117 16 6 2.2450 -0.0054 4.3047 17 6 3.5616 0.3144 4.5949 18 8 4.1796 -0.2499 5.6669 19 6 3.4134 -1.1694 6.4476 20 6 4.2483 1.2188 3.7906 21 8 5.5386 1.5404 4.0748 22 6 5.7531 2.6524 4.9464 23 6 3.6142 1.7911 2.6995 24 6 4.3549 2.7704 1.8258 25 1 -0.3633 0.4749 -0.9113 26 1 -0.3633 -1.0267 0.0443 27 1 -0.3633 0.5517 0.8670 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 0.4899 1.9512 -1.3241 31 1 1.7636 3.1699 -1.0780 32 1 2.5167 2.0687 -5.5768 33 1 0.5341 2.0080 1.3486 34 1 1.8959 3.1372 1.1523 35 1 0.5948 0.3122 2.9843 36 1 1.7084 -0.7036 4.9301 37 1 2.5361 -0.6621 6.8490 38 1 3.0962 -2.0024 5.8203 39 1 4.0235 -1.5453 7.2689 40 1 5.3181 3.5491 4.5051 41 1 5.2814 2.4558 5.9091 42 1 6.8235 2.8003 5.0901 43 1 4.2101 3.7806 2.2086 44 1 5.4179 2.5292 1.8299 45 1 3.9725 2.7097 0.8068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347651612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:44 Heat of formation + Delta-G solvation = -39.852882 kcal Electronic energy + Delta-G solvation = -24469.846387 eV Core-core repulsion = 21067.650797 eV Total energy + Delta-G solvation = -3402.195590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58660 -38.42669 -37.92702 -36.22863 -32.58052 -32.24905 -30.64647 -29.61047 -28.41065 -27.31345 -26.82980 -25.90252 -24.58499 -22.80970 -21.67133 -20.77041 -19.17013 -17.92350 -16.99124 -16.83726 -16.61994 -16.02896 -15.18299 -15.08383 -14.97895 -14.75805 -14.22107 -13.91336 -13.71506 -13.53995 -13.25665 -12.88177 -12.55756 -12.31282 -12.15922 -12.11572 -11.84117 -11.76153 -11.59069 -11.44963 -11.19070 -11.15424 -10.85694 -10.69319 -10.54454 -10.40387 -9.98497 -9.93283 -9.77190 -9.26981 -8.53942 -8.46018 -7.95502 -7.27589 -6.02161 -3.98586 1.28080 1.45847 3.18162 3.28653 3.36557 3.37320 3.52257 3.99476 4.43403 4.77073 4.89988 4.92052 4.98532 5.09007 5.19534 5.29117 5.30123 5.31846 5.33591 5.39583 5.45358 5.60058 5.61663 5.72936 5.81913 5.93667 5.96146 6.01390 6.06908 6.11327 6.26094 6.37904 6.40113 6.50437 6.64976 6.78181 6.81044 6.88351 6.95057 7.07672 7.14850 7.63810 7.72809 7.93342 8.07234 8.69453 9.08636 9.59714 11.11185 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.004101 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.342322 B = 6825.411318 C = 7496.940290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 N -0.516 5.516 4 C 0.157 3.843 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.087 3.913 14 C -0.089 4.089 15 C -0.076 4.076 16 C -0.207 4.207 17 C 0.105 3.895 18 O -0.311 6.311 19 C 0.027 3.973 20 C 0.055 3.945 21 O -0.322 6.322 22 C 0.037 3.963 23 C -0.034 4.034 24 C -0.121 4.121 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.058 0.942 30 H -0.003 1.003 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -0.965 21.987 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.069 4.069 3 N -0.239 5.239 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.041 4.041 14 C -0.090 4.090 15 C -0.095 4.095 16 C -0.226 4.226 17 C 0.059 3.941 18 O -0.224 6.224 19 C -0.068 4.068 20 C 0.011 3.989 21 O -0.238 6.238 22 C -0.058 4.058 23 C -0.035 4.035 24 C -0.178 4.178 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.015 0.985 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.288 -0.998 21.768 21.793 hybrid contribution -2.004 0.657 0.023 2.110 sum -2.293 -0.341 21.791 21.914 Atomic orbital electron populations 1.22413 0.99628 1.01059 1.01748 1.22002 0.91768 0.91072 1.02053 1.62204 1.59057 1.01875 1.00761 1.20273 0.94463 0.93649 0.88538 1.21014 1.23707 1.20043 0.89364 0.90150 1.24886 0.95872 0.96716 0.95870 1.69899 1.42421 1.42561 0.99137 0.86910 0.82287 0.83327 0.77487 1.20213 1.21322 1.19357 1.21052 0.96232 0.98008 0.88786 1.19622 0.93556 0.98661 0.97144 1.20875 0.99753 0.95274 0.93599 1.20999 0.94062 1.05833 1.01716 1.19344 0.91314 0.95425 0.87978 1.86134 1.40525 1.57454 1.38270 1.23029 0.96863 0.92011 0.94936 1.17767 0.85538 0.99586 0.95994 1.86077 1.21244 1.49775 1.66707 1.22929 1.02030 0.88090 0.92742 1.19881 0.93092 0.96641 0.93933 1.20861 1.00362 0.95777 1.00752 0.91652 0.93158 0.93635 0.89789 0.92396 0.98534 0.96134 0.92750 0.94506 0.90461 0.85851 0.85486 0.92932 0.92682 0.88499 0.93791 0.93986 0.89221 0.91951 0.91118 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.27 37.16 0.34 -2.81 16 2 C 0.06 1.11 5.68 -3.82 -0.02 1.09 16 3 N -0.52 -10.36 3.99 -237.51 -0.95 -11.31 16 4 C 0.16 3.65 3.63 -4.97 -0.02 3.63 16 5 C -0.50 -14.00 9.15 -34.44 -0.32 -14.31 16 6 H 0.08 2.47 7.65 -52.49 -0.40 2.07 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 9 Si 0.87 21.21 27.44 -169.99 -4.66 16.55 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.26 6.59 56.52 0.37 -5.89 16 13 C 0.09 1.45 4.02 -4.98 -0.02 1.43 16 14 C -0.09 -1.37 4.58 -104.61 -0.48 -1.85 16 15 C -0.08 -1.04 8.63 -39.57 -0.34 -1.38 16 16 C -0.21 -2.64 9.04 -39.46 -0.36 -2.99 16 17 C 0.11 1.51 6.70 -39.12 -0.26 1.24 16 18 O -0.31 -4.08 10.28 -34.23 -0.35 -4.43 16 19 C 0.03 0.23 9.81 101.05 0.99 1.22 16 20 C 0.06 0.86 5.71 -39.12 -0.22 0.64 16 21 O -0.32 -4.91 9.25 -34.20 -0.32 -5.22 16 22 C 0.04 0.41 11.13 101.05 1.12 1.54 16 23 C -0.03 -0.54 5.89 -104.50 -0.62 -1.16 16 24 C -0.12 -1.87 9.03 36.00 0.33 -1.54 16 25 H 0.06 1.23 6.32 -51.93 -0.33 0.90 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.68 6.00 -51.93 -0.31 0.37 16 28 H 0.08 1.79 7.18 -51.93 -0.37 1.42 16 29 H 0.06 1.01 6.45 -51.93 -0.34 0.68 16 30 H 0.00 -0.07 5.02 -51.93 -0.26 -0.33 16 31 H 0.02 0.48 7.17 -51.93 -0.37 0.11 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.04 0.58 5.92 -51.93 -0.31 0.27 16 34 H 0.08 1.26 7.00 -51.93 -0.36 0.90 16 35 H 0.12 1.48 7.79 -52.48 -0.41 1.07 16 36 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 37 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 38 H 0.05 0.43 7.68 -51.93 -0.40 0.03 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.09 7.53 -51.93 -0.39 0.69 16 45 H 0.10 1.78 6.34 -51.93 -0.33 1.45 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -31.66 352.61 -7.17 -38.83 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.01 Total: 0.37 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 0.04 Total: -13.41 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.17 Total: -38.00 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.67 Total: -9.65 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.66 Total: 16.55 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.66 -7.17 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347651612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.027 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds