Wall clock time and date at job start Tue Mar 31 2020 06:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46899 * 109.46776 * 2 1 4 4 C 1.46903 * 110.99559 * 299.34888 * 3 2 1 5 5 C 1.50701 * 109.47399 * 288.74553 * 4 3 2 6 6 H 1.08000 * 119.99932 * 1.49764 * 5 4 3 7 7 C 1.37878 * 119.99827 * 181.49461 * 5 4 3 8 8 N 1.31517 * 119.99359 * 180.02562 * 7 5 4 9 9 Si 1.86788 * 120.00255 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47454 * 89.99600 * 9 7 5 11 11 H 1.48502 * 109.47432 * 209.99766 * 9 7 5 12 12 H 1.48498 * 109.47291 * 329.99728 * 9 7 5 13 13 C 1.46895 * 111.00129 * 63.30298 * 3 2 1 14 14 C 1.50699 * 109.47180 * 66.05075 * 13 3 2 15 15 C 1.38257 * 119.92368 * 259.99963 * 14 13 3 16 16 C 1.38237 * 120.14580 * 180.25246 * 15 14 13 17 17 C 1.38563 * 119.99986 * 359.48845 * 16 15 14 18 18 O 1.35996 * 120.07455 * 180.25183 * 17 16 15 19 19 C 1.42897 * 116.99922 * 0.27993 * 18 17 16 20 20 C 1.39155 * 119.85477 * 0.53364 * 17 16 15 21 21 O 1.35987 * 120.07538 * 179.70564 * 20 17 16 22 22 C 1.42902 * 116.99626 * 270.01618 * 21 20 17 23 23 C 1.38241 * 119.92916 * 80.01696 * 14 13 3 24 24 C 1.50697 * 120.00096 * 359.97438 * 23 14 13 25 25 H 1.08996 * 109.47093 * 62.47351 * 1 2 3 26 26 H 1.08999 * 109.46763 * 182.47138 * 1 2 3 27 27 H 1.09000 * 109.46993 * 302.46696 * 1 2 3 28 28 H 1.08997 * 109.47054 * 240.00101 * 2 1 3 29 29 H 1.09002 * 109.46911 * 119.99392 * 2 1 3 30 30 H 1.08999 * 109.47584 * 48.75445 * 4 3 2 31 31 H 1.09004 * 109.46695 * 168.74611 * 4 3 2 32 32 H 0.97006 * 119.99781 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47557 * 306.04189 * 13 3 2 34 34 H 1.09007 * 109.46874 * 186.04729 * 13 3 2 35 35 H 1.08005 * 119.92531 * 359.97438 * 15 14 13 36 36 H 1.08008 * 120.00121 * 179.74192 * 16 15 14 37 37 H 1.09000 * 109.47307 * 299.99360 * 19 18 17 38 38 H 1.09000 * 109.47335 * 59.99841 * 19 18 17 39 39 H 1.09002 * 109.47464 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47308 * 300.00065 * 22 21 20 41 41 H 1.08997 * 109.47313 * 60.00201 * 22 21 20 42 42 H 1.09008 * 109.47087 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47048 * 89.99960 * 24 23 14 44 44 H 1.09001 * 109.47131 * 209.99529 * 24 23 14 45 45 H 1.09000 * 109.47289 * 330.00092 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5613 2.1053 -1.1955 5 6 2.2926 1.5856 -2.4064 6 1 3.0070 0.7824 -2.3022 7 6 2.0495 2.1355 -3.6471 8 7 2.6874 1.6816 -4.7039 9 14 0.8144 3.5252 -3.8271 10 1 1.5072 4.8281 -3.6604 11 1 0.1931 3.4639 -5.1745 12 1 -0.2392 3.3886 -2.7896 13 6 1.6142 2.0867 1.2252 14 6 2.3023 1.4634 2.4122 15 6 1.6199 0.5652 3.2117 16 6 2.2450 -0.0054 4.3047 17 6 3.5616 0.3144 4.5949 18 8 4.1796 -0.2499 5.6669 19 6 3.4134 -1.1694 6.4476 20 6 4.2483 1.2188 3.7906 21 8 5.5386 1.5404 4.0748 22 6 5.7531 2.6524 4.9464 23 6 3.6142 1.7911 2.6995 24 6 4.3549 2.7704 1.8258 25 1 -0.3633 0.4749 -0.9113 26 1 -0.3633 -1.0267 0.0443 27 1 -0.3633 0.5517 0.8670 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 0.4899 1.9512 -1.3241 31 1 1.7636 3.1699 -1.0780 32 1 2.5167 2.0687 -5.5768 33 1 0.5341 2.0080 1.3486 34 1 1.8959 3.1372 1.1523 35 1 0.5948 0.3122 2.9843 36 1 1.7084 -0.7036 4.9301 37 1 2.5361 -0.6621 6.8490 38 1 3.0962 -2.0024 5.8203 39 1 4.0235 -1.5453 7.2689 40 1 5.3181 3.5491 4.5051 41 1 5.2814 2.4558 5.9091 42 1 6.8235 2.8003 5.0901 43 1 4.2101 3.7806 2.2086 44 1 5.4179 2.5292 1.8299 45 1 3.9725 2.7097 0.8068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347651612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:43 Heat of formation + Delta-G solvation = -60.064562 kcal Electronic energy + Delta-G solvation = -24470.722831 eV Core-core repulsion = 21067.650797 eV Total energy + Delta-G solvation = -3403.072034 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63177 -39.59492 -39.05418 -37.50918 -34.65912 -33.40617 -31.81737 -31.22251 -29.64559 -28.25991 -28.16663 -26.90777 -25.89955 -24.55795 -22.81218 -22.01971 -20.65594 -18.93885 -18.81690 -18.01262 -17.82273 -16.99730 -16.66071 -16.53424 -16.06697 -15.98259 -15.69151 -15.15789 -14.80488 -14.66863 -14.54036 -14.43364 -14.03940 -13.79677 -13.30492 -13.27003 -13.08312 -12.91153 -12.82026 -12.68188 -12.61723 -12.55490 -12.31212 -12.02080 -11.88213 -11.77244 -11.68898 -11.45810 -11.39571 -10.87331 -10.72211 -9.54329 -9.05584 -8.79318 -8.22882 -6.24762 0.22327 0.36773 1.37355 1.38419 1.48834 2.31255 2.37982 2.49246 2.93711 3.10868 3.47034 3.84363 3.90826 4.11727 4.16652 4.30633 4.33504 4.40601 4.41187 4.42343 4.48990 4.50178 4.54743 4.62285 4.70067 4.73550 4.74593 4.76139 4.82278 4.88049 4.93212 4.99414 5.12874 5.21445 5.27521 5.32323 5.45179 5.48289 5.60453 5.71097 5.73571 6.06443 6.22247 6.47456 6.70952 6.73814 6.81835 7.38099 8.94280 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.004101 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.342322 B = 6825.411318 C = 7496.940290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 N -0.533 5.533 4 C 0.169 3.831 5 C -0.506 4.506 6 H 0.032 0.968 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.946 3.054 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.093 3.907 14 C -0.103 4.103 15 C -0.073 4.073 16 C -0.199 4.199 17 C 0.100 3.900 18 O -0.329 6.329 19 C 0.017 3.983 20 C 0.038 3.962 21 O -0.345 6.345 22 C 0.033 3.967 23 C -0.052 4.052 24 C -0.113 4.113 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.003 0.997 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 -0.524 24.760 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.065 4.065 3 N -0.257 5.257 4 C 0.042 3.958 5 C -0.544 4.544 6 H 0.050 0.950 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.171 1.171 13 C -0.034 4.034 14 C -0.104 4.104 15 C -0.092 4.092 16 C -0.217 4.217 17 C 0.054 3.946 18 O -0.243 6.243 19 C -0.078 4.078 20 C -0.007 4.007 21 O -0.262 6.262 22 C -0.061 4.061 23 C -0.053 4.053 24 C -0.169 4.169 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.020 0.980 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.177 0.823 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.136 0.864 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.127 0.873 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.452 -0.566 24.584 24.712 hybrid contribution -1.196 0.390 -0.700 1.439 sum -3.648 -0.176 23.883 24.161 Atomic orbital electron populations 1.22305 0.97381 1.02643 1.01542 1.21901 0.93586 0.90216 1.00825 1.62029 1.60053 1.02449 1.01139 1.19998 0.93857 0.93790 0.88184 1.21245 1.22869 1.18654 0.91676 0.95004 1.25833 0.98172 0.99780 0.95309 1.70071 1.44739 1.44674 0.99872 0.85739 0.79874 0.79551 0.77916 1.19167 1.21159 1.17056 1.21024 0.97254 0.97704 0.87442 1.19551 0.93594 0.99967 0.97321 1.21103 1.00579 0.94265 0.93242 1.21311 0.93440 1.05505 1.01473 1.19486 0.91858 0.95053 0.88231 1.86115 1.41879 1.58164 1.38133 1.23367 0.97721 0.91571 0.95093 1.17958 0.85788 1.00386 0.96520 1.86022 1.21425 1.51118 1.67604 1.23114 1.03453 0.87194 0.92317 1.19946 0.93624 0.97316 0.94450 1.20723 0.99711 0.97149 0.99342 0.94031 0.91008 0.91191 0.93749 0.90856 0.97970 0.95680 0.92658 0.92823 0.90541 0.83687 0.82318 0.91261 0.91919 0.86436 0.93275 0.93536 0.87299 0.90128 0.91910 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.60 9.27 71.98 0.67 -4.93 16 2 C 0.06 2.35 5.68 86.31 0.49 2.84 16 3 N -0.53 -21.43 3.99 -905.35 -3.61 -25.04 16 4 C 0.17 7.85 3.63 85.56 0.31 8.16 16 5 C -0.51 -29.25 9.15 25.60 0.23 -29.01 16 6 H 0.03 2.09 7.65 -2.91 -0.02 2.07 16 7 C 0.01 0.33 5.47 84.65 0.46 0.79 16 8 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 9 Si 0.95 43.82 27.44 68.60 1.88 45.71 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.25 -10.50 6.59 99.48 0.66 -9.85 16 13 C 0.09 2.95 4.02 85.56 0.34 3.29 16 14 C -0.10 -3.03 4.58 -19.86 -0.09 -3.12 16 15 C -0.07 -1.76 8.63 22.27 0.19 -1.57 16 16 C -0.20 -4.41 9.04 22.35 0.20 -4.21 16 17 C 0.10 2.67 6.70 22.57 0.15 2.82 16 18 O -0.33 -7.96 10.28 -79.64 -0.82 -8.78 16 19 C 0.02 0.23 9.81 113.37 1.11 1.34 16 20 C 0.04 1.15 5.71 22.57 0.13 1.28 16 21 O -0.34 -10.42 9.25 -79.53 -0.74 -11.15 16 22 C 0.03 0.71 11.13 113.37 1.26 1.97 16 23 C -0.05 -1.63 5.89 -19.79 -0.12 -1.75 16 24 C -0.11 -3.53 9.03 71.23 0.64 -2.89 16 25 H 0.04 1.49 6.32 -2.39 -0.02 1.47 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 1.82 6.00 -2.39 -0.01 1.81 16 28 H 0.04 1.98 7.18 -2.39 -0.02 1.96 16 29 H 0.07 2.49 6.45 -2.39 -0.02 2.47 16 30 H 0.00 0.13 5.02 -2.39 -0.01 0.11 16 31 H 0.03 1.15 7.17 -2.38 -0.02 1.13 16 32 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 33 H 0.05 1.52 5.92 -2.39 -0.01 1.51 16 34 H 0.08 2.41 7.00 -2.38 -0.02 2.39 16 35 H 0.15 2.82 7.79 -2.91 -0.02 2.80 16 36 H 0.16 2.43 6.30 -2.91 -0.02 2.41 16 37 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 38 H 0.06 0.77 7.68 -2.39 -0.02 0.75 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 2.00 7.53 -2.39 -0.02 1.98 16 45 H 0.07 2.69 6.34 -2.39 -0.02 2.67 16 Total: -1.00 -71.68 352.61 3.94 -67.74 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.93 Total: 16.43 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 5.99 Total: -25.00 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -3.31 Total: -84.95 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -1.55 Total: -19.94 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -71.68 3.94 -67.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347651612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.679 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds