Wall clock time and date at job start Tue Mar 31 2020 06:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47098 * 2 1 4 4 C 1.46900 * 111.00568 * 295.90949 * 3 2 1 5 5 C 1.50698 * 109.47021 * 288.42570 * 4 3 2 6 6 H 1.08003 * 119.99830 * 0.68787 * 5 4 3 7 7 C 1.37875 * 120.00143 * 180.67916 * 5 4 3 8 8 N 1.31511 * 120.00012 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99891 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47277 * 89.99082 * 9 7 5 11 11 H 1.48495 * 109.46745 * 209.99876 * 9 7 5 12 12 H 1.48504 * 109.46714 * 329.99333 * 9 7 5 13 13 C 1.46910 * 110.99686 * 59.86452 * 3 2 1 14 14 C 1.52997 * 109.46975 * 66.04599 * 13 3 2 15 15 C 1.53004 * 109.46941 * 180.02562 * 14 13 3 16 16 O 1.42894 * 109.47202 * 179.97438 * 15 14 13 17 17 C 1.35983 * 117.00033 * 179.97438 * 16 15 14 18 18 C 1.38696 * 120.00328 * 179.97438 * 17 16 15 19 19 C 1.38129 * 120.00461 * 180.27775 * 18 17 16 20 20 C 1.38697 * 119.99507 * 359.49324 * 19 18 17 21 21 O 1.35983 * 119.99722 * 180.23421 * 20 19 18 22 22 C 1.42901 * 117.00303 * 0.27157 * 21 20 19 23 23 C 1.38695 * 120.00384 * 0.50897 * 20 19 18 24 24 C 1.38140 * 119.99774 * 359.74587 * 23 20 19 25 25 H 1.08998 * 109.47235 * 298.42283 * 1 2 3 26 26 H 1.08997 * 109.47355 * 58.42218 * 1 2 3 27 27 H 1.09000 * 109.47002 * 178.42316 * 1 2 3 28 28 H 1.09002 * 109.46793 * 240.00167 * 2 1 3 29 29 H 1.08994 * 109.47320 * 120.00451 * 2 1 3 30 30 H 1.08999 * 109.46853 * 48.42415 * 4 3 2 31 31 H 1.09001 * 109.47140 * 168.41992 * 4 3 2 32 32 H 0.97003 * 119.99693 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46841 * 306.04335 * 13 3 2 34 34 H 1.09004 * 109.46863 * 186.04705 * 13 3 2 35 35 H 1.08991 * 109.47264 * 60.00166 * 14 13 3 36 36 H 1.08998 * 109.47179 * 299.99381 * 14 13 3 37 37 H 1.08997 * 109.47485 * 59.99437 * 15 14 13 38 38 H 1.09004 * 109.46598 * 299.99923 * 15 14 13 39 39 H 1.08002 * 119.99882 * 0.02562 * 18 17 16 40 40 H 1.08004 * 120.00125 * 179.72373 * 19 18 17 41 41 H 1.08996 * 109.47181 * 300.00424 * 22 21 20 42 42 H 1.09001 * 109.46540 * 60.00406 * 22 21 20 43 43 H 1.09004 * 109.47192 * 180.02562 * 22 21 20 44 44 H 1.08001 * 120.00424 * 179.72321 * 23 20 19 45 45 H 1.07997 * 119.99562 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6302 2.0812 -1.2335 5 6 2.4342 1.5432 -2.3891 6 1 3.1537 0.7546 -2.2256 7 6 2.2510 2.0578 -3.6551 8 7 2.9529 1.5887 -4.6634 9 14 1.0068 3.4222 -3.9377 10 1 1.6699 4.7399 -3.7675 11 1 0.4610 3.3168 -5.3147 12 1 -0.0997 3.2943 -2.9555 13 6 1.5459 2.1108 1.1862 14 6 2.1748 1.5023 2.4412 15 6 1.6809 2.2578 3.6766 16 8 2.2677 1.6892 4.8489 17 6 1.9309 2.2490 6.0416 18 6 2.4639 1.7458 7.2190 19 6 2.1173 2.3107 8.4309 20 6 1.2445 3.3878 8.4695 21 8 0.9070 3.9470 9.6623 22 6 1.4934 3.3781 10.8346 23 6 0.7114 3.8911 7.2922 24 6 1.0539 3.3228 6.0806 25 1 -0.3633 0.4891 0.9038 26 1 -0.3634 0.5381 -0.8755 27 1 -0.3633 -1.0273 -0.0283 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.5691 1.9192 -1.4226 31 1 1.8209 3.1487 -1.1239 32 1 2.8243 1.9509 -5.5540 33 1 0.4605 2.0338 1.2497 34 1 1.8319 3.1598 1.1085 35 1 3.2601 1.5793 2.3777 36 1 1.8888 0.4534 2.5189 37 1 0.5955 2.1806 3.7400 38 1 1.9665 3.3069 3.5991 39 1 3.1468 0.9096 7.1886 40 1 2.5289 1.9159 9.3481 41 1 1.2074 2.3291 10.9115 42 1 2.5789 3.4550 10.7718 43 1 1.1410 3.9159 11.7148 44 1 0.0282 4.7270 7.3226 45 1 0.6385 3.7144 5.1639 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348556101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:18 Heat of formation + Delta-G solvation = -45.544407 kcal Electronic energy + Delta-G solvation = -22680.952791 eV Core-core repulsion = 19278.510398 eV Total energy + Delta-G solvation = -3402.442393 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61730 -39.25146 -37.74054 -36.53089 -33.03236 -32.16625 -31.40575 -29.72327 -29.42800 -27.81000 -27.05767 -24.82855 -23.49079 -22.88074 -21.92766 -20.95722 -19.21313 -18.59339 -17.79154 -16.73455 -16.65173 -16.38771 -15.99831 -15.31224 -15.13393 -15.04476 -14.49059 -14.27491 -13.83665 -13.62726 -13.35916 -13.11722 -12.86568 -12.72182 -12.47953 -12.37172 -12.24153 -11.68482 -11.65437 -11.53386 -11.47366 -11.05796 -10.85165 -10.71603 -10.58800 -10.43429 -10.42586 -9.89800 -9.84397 -9.35886 -9.29553 -8.55980 -7.94831 -7.33663 -6.04436 -4.01005 0.98306 1.23950 2.95385 3.12224 3.27450 3.35179 3.35914 3.48600 4.41582 4.48653 4.53201 4.68067 4.74314 4.78215 4.87137 4.93422 5.02062 5.08964 5.15059 5.27076 5.32366 5.38003 5.45791 5.56224 5.68212 5.70495 5.75147 5.84801 5.88914 6.02424 6.02658 6.10438 6.25511 6.29861 6.35122 6.44642 6.48475 6.76421 6.91855 7.02754 7.05385 7.33565 7.61783 7.90148 8.04633 8.67103 9.05449 9.57395 11.08857 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.034316 B = 0.002305 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.753157 B =12146.833212 C =12482.666765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 N -0.523 5.523 4 C 0.158 3.842 5 C -0.505 4.505 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.052 3.948 14 C -0.113 4.113 15 C 0.062 3.938 16 O -0.313 6.313 17 C 0.102 3.898 18 C -0.116 4.116 19 C -0.168 4.168 20 C 0.083 3.917 21 O -0.320 6.320 22 C 0.028 3.972 23 C -0.110 4.110 24 C -0.170 4.170 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.059 0.941 30 H -0.003 1.003 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.132 0.868 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 2.314 28.144 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.072 4.072 3 N -0.246 5.246 4 C 0.032 3.968 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.077 4.077 14 C -0.151 4.151 15 C -0.014 4.014 16 O -0.227 6.227 17 C 0.057 3.943 18 C -0.134 4.134 19 C -0.186 4.186 20 C 0.038 3.962 21 O -0.234 6.234 22 C -0.067 4.067 23 C -0.129 4.129 24 C -0.189 4.189 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.014 0.986 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.378 2.326 27.937 28.374 hybrid contribution -1.530 0.805 -0.275 1.751 sum -5.908 3.131 27.662 28.459 Atomic orbital electron populations 1.22410 0.99600 1.01392 1.01547 1.22063 0.91847 0.91155 1.02172 1.62132 1.58829 1.01867 1.01820 1.20247 0.94890 0.93911 0.87777 1.21024 1.22017 1.21218 0.90091 0.90155 1.24899 0.95826 0.96638 0.96061 1.69892 1.41030 1.42904 1.00157 0.86891 0.82343 0.83100 0.77584 1.20187 1.21231 1.19359 1.21987 0.96793 0.98314 0.90566 1.21531 1.02679 1.00153 0.90767 1.22863 0.97332 0.97858 0.83345 1.86093 1.67347 1.56760 1.12482 1.18946 0.95694 0.93473 0.86190 1.20236 1.02103 1.01790 0.89311 1.21036 1.01198 0.97983 0.98431 1.18884 0.97165 0.94327 0.85792 1.86067 1.67576 1.56967 1.12838 1.23027 0.98407 0.99228 0.86072 1.20215 1.01847 1.01516 0.89317 1.21156 1.01105 0.98040 0.98588 0.93548 0.91848 0.92981 0.89596 0.92253 0.98570 0.96122 0.92707 0.95140 0.91298 0.89975 0.90896 0.92288 0.91956 0.84816 0.84934 0.92755 0.92725 0.88366 0.84969 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.26 37.16 0.34 -2.81 16 2 C 0.06 1.03 5.69 -3.82 -0.02 1.01 16 3 N -0.52 -10.60 4.66 -236.06 -1.10 -11.70 16 4 C 0.16 3.75 3.67 -4.98 -0.02 3.73 16 5 C -0.51 -14.23 9.09 -34.44 -0.31 -14.55 16 6 H 0.08 2.48 7.72 -52.48 -0.41 2.07 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.87 21.36 27.45 -169.99 -4.67 16.69 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.31 6.56 56.52 0.37 -5.93 16 13 C 0.05 0.84 4.71 -3.82 -0.02 0.82 16 14 C -0.11 -1.56 5.51 -26.73 -0.15 -1.71 16 15 C 0.06 0.72 4.74 37.16 0.18 0.90 16 16 O -0.31 -4.04 10.14 -19.69 -0.20 -4.24 16 17 C 0.10 1.21 6.69 -39.24 -0.26 0.94 16 18 C -0.12 -1.21 9.98 -39.45 -0.39 -1.60 16 19 C -0.17 -1.55 9.03 -39.45 -0.36 -1.90 16 20 C 0.08 0.84 6.69 -39.24 -0.26 0.58 16 21 O -0.32 -3.02 10.50 -19.69 -0.21 -3.23 16 22 C 0.03 0.15 9.81 101.05 0.99 1.14 16 23 C -0.11 -1.12 9.98 -39.45 -0.39 -1.52 16 24 C -0.17 -1.80 9.03 -39.45 -0.36 -2.16 16 25 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 26 H 0.06 1.18 6.21 -51.93 -0.32 0.86 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.79 7.15 -51.93 -0.37 1.42 16 29 H 0.06 0.96 6.48 -51.93 -0.34 0.63 16 30 H 0.00 -0.08 5.02 -51.93 -0.26 -0.34 16 31 H 0.02 0.49 7.21 -51.93 -0.37 0.12 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.03 0.47 6.03 -51.93 -0.31 0.15 16 34 H 0.07 1.09 7.87 -51.93 -0.41 0.68 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.01 6.56 -51.93 -0.34 0.67 16 37 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 38 H 0.06 0.67 7.66 -51.93 -0.40 0.28 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 0.88 6.29 -52.48 -0.33 0.55 16 41 H 0.05 0.25 7.65 -51.93 -0.40 -0.15 16 42 H 0.05 0.25 7.67 -51.93 -0.40 -0.15 16 43 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.14 1.25 6.29 -52.49 -0.33 0.92 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -31.70 355.51 -8.16 -39.87 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.99 Total: -0.70 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.13 Total: -15.28 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.33 Total: -38.46 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.41 Total: -7.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.70 -8.16 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348556101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.676 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds