Wall clock time and date at job start Tue Mar 31 2020 06:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47098 * 2 1 4 4 C 1.46900 * 111.00568 * 295.90949 * 3 2 1 5 5 C 1.50698 * 109.47021 * 288.42570 * 4 3 2 6 6 H 1.08003 * 119.99830 * 0.68787 * 5 4 3 7 7 C 1.37875 * 120.00143 * 180.67916 * 5 4 3 8 8 N 1.31511 * 120.00012 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99891 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47277 * 89.99082 * 9 7 5 11 11 H 1.48495 * 109.46745 * 209.99876 * 9 7 5 12 12 H 1.48504 * 109.46714 * 329.99333 * 9 7 5 13 13 C 1.46910 * 110.99686 * 59.86452 * 3 2 1 14 14 C 1.52997 * 109.46975 * 66.04599 * 13 3 2 15 15 C 1.53004 * 109.46941 * 180.02562 * 14 13 3 16 16 O 1.42894 * 109.47202 * 179.97438 * 15 14 13 17 17 C 1.35983 * 117.00033 * 179.97438 * 16 15 14 18 18 C 1.38696 * 120.00328 * 179.97438 * 17 16 15 19 19 C 1.38129 * 120.00461 * 180.27775 * 18 17 16 20 20 C 1.38697 * 119.99507 * 359.49324 * 19 18 17 21 21 O 1.35983 * 119.99722 * 180.23421 * 20 19 18 22 22 C 1.42901 * 117.00303 * 0.27157 * 21 20 19 23 23 C 1.38695 * 120.00384 * 0.50897 * 20 19 18 24 24 C 1.38140 * 119.99774 * 359.74587 * 23 20 19 25 25 H 1.08998 * 109.47235 * 298.42283 * 1 2 3 26 26 H 1.08997 * 109.47355 * 58.42218 * 1 2 3 27 27 H 1.09000 * 109.47002 * 178.42316 * 1 2 3 28 28 H 1.09002 * 109.46793 * 240.00167 * 2 1 3 29 29 H 1.08994 * 109.47320 * 120.00451 * 2 1 3 30 30 H 1.08999 * 109.46853 * 48.42415 * 4 3 2 31 31 H 1.09001 * 109.47140 * 168.41992 * 4 3 2 32 32 H 0.97003 * 119.99693 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46841 * 306.04335 * 13 3 2 34 34 H 1.09004 * 109.46863 * 186.04705 * 13 3 2 35 35 H 1.08991 * 109.47264 * 60.00166 * 14 13 3 36 36 H 1.08998 * 109.47179 * 299.99381 * 14 13 3 37 37 H 1.08997 * 109.47485 * 59.99437 * 15 14 13 38 38 H 1.09004 * 109.46598 * 299.99923 * 15 14 13 39 39 H 1.08002 * 119.99882 * 0.02562 * 18 17 16 40 40 H 1.08004 * 120.00125 * 179.72373 * 19 18 17 41 41 H 1.08996 * 109.47181 * 300.00424 * 22 21 20 42 42 H 1.09001 * 109.46540 * 60.00406 * 22 21 20 43 43 H 1.09004 * 109.47192 * 180.02562 * 22 21 20 44 44 H 1.08001 * 120.00424 * 179.72321 * 23 20 19 45 45 H 1.07997 * 119.99562 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6302 2.0812 -1.2335 5 6 2.4342 1.5432 -2.3891 6 1 3.1537 0.7546 -2.2256 7 6 2.2510 2.0578 -3.6551 8 7 2.9529 1.5887 -4.6634 9 14 1.0068 3.4222 -3.9377 10 1 1.6699 4.7399 -3.7675 11 1 0.4610 3.3168 -5.3147 12 1 -0.0997 3.2943 -2.9555 13 6 1.5459 2.1108 1.1862 14 6 2.1748 1.5023 2.4412 15 6 1.6809 2.2578 3.6766 16 8 2.2677 1.6892 4.8489 17 6 1.9309 2.2490 6.0416 18 6 2.4639 1.7458 7.2190 19 6 2.1173 2.3107 8.4309 20 6 1.2445 3.3878 8.4695 21 8 0.9070 3.9470 9.6623 22 6 1.4934 3.3781 10.8346 23 6 0.7114 3.8911 7.2922 24 6 1.0539 3.3228 6.0806 25 1 -0.3633 0.4891 0.9038 26 1 -0.3634 0.5381 -0.8755 27 1 -0.3633 -1.0273 -0.0283 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.5691 1.9192 -1.4226 31 1 1.8209 3.1487 -1.1239 32 1 2.8243 1.9509 -5.5540 33 1 0.4605 2.0338 1.2497 34 1 1.8319 3.1598 1.1085 35 1 3.2601 1.5793 2.3777 36 1 1.8888 0.4534 2.5189 37 1 0.5955 2.1806 3.7400 38 1 1.9665 3.3069 3.5991 39 1 3.1468 0.9096 7.1886 40 1 2.5289 1.9159 9.3481 41 1 1.2074 2.3291 10.9115 42 1 2.5789 3.4550 10.7718 43 1 1.1410 3.9159 11.7148 44 1 0.0282 4.7270 7.3226 45 1 0.6385 3.7144 5.1639 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348556101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:18 Heat of formation + Delta-G solvation = -66.168796 kcal Electronic energy + Delta-G solvation = -22681.847132 eV Core-core repulsion = 19278.510398 eV Total energy + Delta-G solvation = -3403.336733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36249 -40.04698 -39.17595 -37.32471 -34.87997 -33.60839 -32.16603 -31.31262 -30.24633 -29.11091 -27.92061 -26.05666 -24.91215 -23.89509 -22.96172 -22.09080 -20.66219 -19.35810 -18.88678 -18.54499 -17.43719 -17.40714 -16.68331 -16.61904 -16.50180 -16.12042 -15.73430 -15.43562 -15.04638 -14.59994 -14.44950 -14.26225 -14.17381 -13.90615 -13.68664 -13.35462 -13.28284 -13.07325 -12.95931 -12.69891 -12.52481 -12.37659 -12.23065 -12.01074 -11.92152 -11.82490 -11.58241 -11.41915 -11.39573 -11.15500 -10.75033 -10.09039 -8.90933 -8.71545 -8.25992 -6.28312 0.25261 0.46695 1.35369 1.36669 1.47041 2.17281 2.35551 2.44760 2.73399 3.07290 3.32423 3.80071 3.86919 3.92884 4.01875 4.15462 4.19190 4.30147 4.34987 4.35282 4.43017 4.43177 4.48074 4.53818 4.61248 4.66905 4.70115 4.74597 4.76476 4.93588 4.96790 5.00521 5.09317 5.13910 5.22515 5.29766 5.31311 5.35584 5.47720 5.58933 5.59821 6.03183 6.34125 6.43774 6.55201 6.70670 6.78085 7.34642 8.90948 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.034316 B = 0.002305 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.753157 B =12146.833212 C =12482.666765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.056 3.944 3 N -0.545 5.545 4 C 0.168 3.832 5 C -0.511 4.511 6 H 0.034 0.966 7 C 0.004 3.996 8 N -0.950 5.950 9 Si 0.947 3.053 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.054 3.946 14 C -0.103 4.103 15 C 0.066 3.934 16 O -0.330 6.330 17 C 0.079 3.921 18 C -0.124 4.124 19 C -0.166 4.166 20 C 0.076 3.924 21 O -0.337 6.337 22 C 0.018 3.982 23 C -0.122 4.122 24 C -0.173 4.173 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.001 0.999 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.142 0.858 40 H 0.158 0.842 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.117 0.883 44 H 0.144 0.856 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 3.529 30.645 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.072 4.072 3 N -0.269 5.269 4 C 0.041 3.959 5 C -0.550 4.550 6 H 0.052 0.948 7 C -0.193 4.193 8 N -0.591 5.591 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.172 1.172 13 C -0.074 4.074 14 C -0.141 4.141 15 C -0.009 4.009 16 O -0.244 6.244 17 C 0.034 3.966 18 C -0.143 4.143 19 C -0.185 4.185 20 C 0.031 3.969 21 O -0.251 6.251 22 C -0.077 4.077 23 C -0.141 4.141 24 C -0.192 4.192 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.019 0.981 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.160 0.840 40 H 0.175 0.825 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.162 0.838 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.184 3.534 30.482 31.303 hybrid contribution -0.877 0.343 -0.913 1.311 sum -7.061 3.878 29.569 30.647 Atomic orbital electron populations 1.22312 0.97633 1.02626 1.01490 1.22021 0.93479 0.90192 1.01475 1.61986 1.60112 1.02744 1.02017 1.19987 0.94043 0.93990 0.87876 1.21280 1.21469 1.20032 0.92196 0.94790 1.25868 0.98165 0.99597 0.95630 1.70061 1.43308 1.44960 1.00818 0.85719 0.79898 0.79475 0.77876 1.19076 1.20945 1.17207 1.22029 0.97821 0.98110 0.89435 1.21352 1.01591 1.00297 0.90854 1.22770 0.98046 0.97782 0.82303 1.86039 1.67964 1.57395 1.13046 1.19180 0.96940 0.94475 0.86037 1.20474 1.02239 1.02151 0.89437 1.21288 1.00672 0.97494 0.98997 1.19095 0.97067 0.94439 0.86261 1.86051 1.68091 1.57546 1.13434 1.23325 0.99027 1.00093 0.85224 1.20448 1.02227 1.01990 0.89422 1.21298 1.00844 0.97725 0.99291 0.91276 0.94112 0.91082 0.93360 0.89915 0.98122 0.95690 0.92560 0.93520 0.90954 0.91454 0.90897 0.90728 0.91039 0.84001 0.82485 0.91749 0.91806 0.86477 0.83848 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.68 9.26 71.98 0.67 -5.01 16 2 C 0.06 2.06 5.69 86.31 0.49 2.55 16 3 N -0.55 -21.85 4.66 -900.77 -4.20 -26.04 16 4 C 0.17 7.90 3.67 85.56 0.31 8.22 16 5 C -0.51 -29.70 9.09 25.60 0.23 -29.47 16 6 H 0.03 2.22 7.72 -2.91 -0.02 2.20 16 7 C 0.00 0.24 5.47 84.65 0.46 0.71 16 8 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 9 Si 0.95 43.92 27.45 68.60 1.88 45.80 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.25 -10.62 6.56 99.48 0.65 -9.97 16 13 C 0.05 1.62 4.71 86.30 0.41 2.03 16 14 C -0.10 -2.66 5.51 30.59 0.17 -2.49 16 15 C 0.07 1.42 4.74 71.98 0.34 1.76 16 16 O -0.33 -8.07 10.14 -93.36 -0.95 -9.02 16 17 C 0.08 1.75 6.69 22.49 0.15 1.90 16 18 C -0.12 -2.42 9.98 22.35 0.22 -2.20 16 19 C -0.17 -2.75 9.03 22.35 0.20 -2.55 16 20 C 0.08 1.42 6.69 22.49 0.15 1.57 16 21 O -0.34 -5.73 10.50 -93.36 -0.98 -6.71 16 22 C 0.02 0.15 9.81 113.37 1.11 1.26 16 23 C -0.12 -2.30 9.98 22.36 0.22 -2.08 16 24 C -0.17 -3.39 9.03 22.36 0.20 -3.19 16 25 H 0.07 1.83 6.36 -2.39 -0.02 1.82 16 26 H 0.04 1.45 6.21 -2.39 -0.01 1.44 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 2.10 7.15 -2.39 -0.02 2.08 16 29 H 0.08 2.61 6.48 -2.39 -0.02 2.59 16 30 H 0.00 0.06 5.02 -2.39 -0.01 0.04 16 31 H 0.03 1.15 7.21 -2.39 -0.02 1.14 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.05 1.27 6.03 -2.38 -0.01 1.26 16 34 H 0.07 2.13 7.87 -2.39 -0.02 2.11 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.87 6.56 -2.39 -0.02 1.86 16 37 H 0.07 1.36 7.66 -2.39 -0.02 1.35 16 38 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 39 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.16 1.68 6.29 -2.91 -0.02 1.66 16 41 H 0.06 0.42 7.65 -2.39 -0.02 0.40 16 42 H 0.06 0.43 7.67 -2.39 -0.02 0.41 16 43 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.15 2.40 6.29 -2.91 -0.02 2.38 16 Total: -1.00 -70.40 355.51 2.32 -68.08 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.92 Total: 14.53 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 5.35 Total: -26.99 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -3.90 Total: -85.70 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -1.93 Total: -15.72 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -70.40 2.32 -68.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348556101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.912 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds