Wall clock time and date at job start Tue Mar 31 2020 07:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38266 * 119.97548 * 2 1 4 4 C 1.38175 * 120.02609 * 179.97438 * 3 2 1 5 5 C 1.38483 * 119.96982 * 0.02562 * 4 3 2 6 6 F 1.35108 * 120.02190 * 179.97438 * 5 4 3 7 7 C 1.38440 * 119.95383 * 359.97438 * 5 4 3 8 8 C 1.38220 * 119.97138 * 359.73946 * 7 5 4 9 9 C 1.50697 * 119.98602 * 180.27598 * 8 7 5 10 10 N 1.46908 * 109.47029 * 254.05806 * 9 8 7 11 11 C 1.46907 * 110.99757 * 190.33841 * 10 9 8 12 12 C 1.50695 * 109.46930 * 169.97961 * 11 10 9 13 13 H 1.08003 * 119.99777 * 2.14561 * 12 11 10 14 14 C 1.37878 * 119.99842 * 182.14440 * 12 11 10 15 15 N 1.31523 * 119.99815 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 119.99980 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47219 * 90.00233 * 16 14 12 18 18 H 1.48502 * 109.47332 * 209.99892 * 16 14 12 19 19 H 1.48501 * 109.47515 * 330.00079 * 16 14 12 20 20 C 1.46897 * 110.99803 * 66.38581 * 10 9 8 21 21 C 1.52996 * 109.47106 * 80.55983 * 20 10 9 22 22 C 1.53003 * 109.47481 * 77.76934 * 21 20 10 23 23 C 1.53005 * 109.47362 * 197.77002 * 21 20 10 24 24 C 1.53000 * 109.47426 * 317.76834 * 21 20 10 25 25 H 1.08991 * 109.47079 * 89.99875 * 1 2 3 26 26 H 1.09000 * 109.46821 * 329.99910 * 1 2 3 27 27 H 1.08998 * 109.47168 * 210.00702 * 1 2 3 28 28 H 1.07998 * 119.98980 * 0.02562 * 3 2 1 29 29 H 1.07992 * 120.01536 * 180.02562 * 4 3 2 30 30 H 1.08001 * 120.01219 * 179.97438 * 7 5 4 31 31 H 1.08991 * 109.47246 * 14.05775 * 9 8 7 32 32 H 1.09008 * 109.46960 * 134.06371 * 9 8 7 33 33 H 1.08999 * 109.46736 * 289.98494 * 11 10 9 34 34 H 1.09004 * 109.46718 * 49.97932 * 11 10 9 35 35 H 0.97000 * 119.99562 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47052 * 200.55389 * 20 10 9 37 37 H 1.08994 * 109.47436 * 320.55830 * 20 10 9 38 38 H 1.09004 * 109.46539 * 22.21250 * 22 21 20 39 39 H 1.08999 * 109.47113 * 142.20896 * 22 21 20 40 40 H 1.08997 * 109.47368 * 262.21627 * 22 21 20 41 41 H 1.09001 * 109.46474 * 59.99969 * 23 21 20 42 42 H 1.08995 * 109.47570 * 179.97438 * 23 21 20 43 43 H 1.09000 * 109.46726 * 300.00167 * 23 21 20 44 44 H 1.09007 * 109.47102 * 63.21857 * 24 21 20 45 45 H 1.08997 * 109.47741 * 183.21783 * 24 21 20 46 46 H 1.08999 * 109.47247 * 303.22158 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 -0.0001 0.0005 6 9 5.6235 -0.0001 0.0005 7 6 3.5797 -1.1987 0.0005 8 6 2.1975 -1.1974 0.0060 9 6 1.4432 -2.5020 0.0123 10 7 0.8634 -2.7388 -1.3167 11 6 -0.0770 -3.8670 -1.2873 12 6 -0.8310 -3.9265 -2.5907 13 1 -0.6071 -3.2204 -3.3767 14 6 -1.8066 -4.8822 -2.7798 15 7 -2.4642 -4.9344 -3.9176 16 14 -2.1932 -6.1037 -1.4205 17 1 -3.2562 -5.5492 -0.5442 18 1 -2.6613 -7.3794 -2.0197 19 1 -0.9698 -6.3539 -0.6169 20 6 1.9154 -2.9563 -2.3187 21 6 2.4091 -4.4020 -2.2342 22 6 1.4005 -5.3263 -2.9193 23 6 3.7651 -4.5195 -2.9331 24 6 2.5555 -4.8060 -0.7658 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8899 0.5139 28 1 1.6573 2.1327 0.0004 29 1 4.1190 2.1345 0.0010 30 1 4.1191 -2.1344 0.0001 31 1 2.1252 -3.3149 0.2612 32 1 0.6454 -2.4568 0.7538 33 1 0.4745 -4.7961 -1.1437 34 1 -0.7810 -3.7317 -0.4661 35 1 -3.1508 -5.6066 -4.0504 36 1 1.5136 -2.7672 -3.3141 37 1 2.7459 -2.2770 -2.1269 38 1 0.8017 -4.7508 -3.6254 39 1 1.9331 -6.1140 -3.4522 40 1 0.7481 -5.7723 -2.1687 41 1 4.4836 -3.8611 -2.4449 42 1 4.1171 -5.5493 -2.8726 43 1 3.6608 -4.2317 -3.9792 44 1 1.5791 -4.7773 -0.2820 45 1 2.9613 -5.8158 -0.7055 46 1 3.2302 -4.1127 -0.2637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352723027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:19 Heat of formation + Delta-G solvation = 20.355368 kcal Electronic energy + Delta-G solvation = -25351.071053 eV Core-core repulsion = 21963.859078 eV Total energy + Delta-G solvation = -3387.211975 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.77914 -40.11531 -38.54162 -33.97675 -32.88430 -32.11394 -31.24837 -28.54553 -27.85840 -26.45337 -26.16288 -25.54119 -23.71600 -22.09900 -20.93790 -20.04429 -18.33395 -17.16382 -16.83614 -16.43298 -15.54881 -15.37804 -15.11122 -14.96717 -14.43961 -14.11776 -13.64341 -13.62785 -13.50576 -13.17384 -12.95745 -12.77383 -12.43458 -11.84908 -11.68770 -11.57548 -11.55933 -11.48230 -11.31510 -11.11539 -11.00713 -10.95452 -10.71047 -10.52525 -10.37892 -10.04085 -9.89286 -9.74837 -9.57572 -9.20288 -8.81594 -8.47904 -8.26612 -7.07833 -6.04793 -3.94430 1.30699 1.33247 3.24988 3.32401 3.34915 3.68282 4.34509 4.40342 4.76057 4.90612 4.98080 5.08979 5.24980 5.30822 5.34535 5.37160 5.39964 5.53976 5.76589 5.79238 5.85246 5.91744 6.02757 6.06486 6.09921 6.10665 6.13407 6.21922 6.26276 6.26923 6.37696 6.43487 6.49175 6.57138 6.62926 6.72113 6.84214 6.84613 6.93732 6.99404 7.06762 7.23385 7.61363 7.68605 7.92977 8.07156 8.67263 9.02623 9.56736 11.08346 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.018806 B = 0.005458 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.506260 B = 5128.998277 C = 5967.312999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.066 4.066 3 C -0.099 4.099 4 C -0.158 4.158 5 C 0.082 3.918 6 F -0.147 7.147 7 C -0.147 4.147 8 C -0.037 4.037 9 C 0.047 3.953 10 N -0.511 5.511 11 C 0.127 3.873 12 C -0.487 4.487 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.864 3.136 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.268 1.268 20 C 0.077 3.923 21 C -0.095 4.095 22 C -0.144 4.144 23 C -0.134 4.134 24 C -0.165 4.165 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.015 0.985 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.019 0.981 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.044 0.956 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.863 7.073 8.335 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.067 4.067 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.063 3.937 6 F -0.126 7.126 7 C -0.166 4.166 8 C -0.037 4.037 9 C -0.080 4.080 10 N -0.233 5.233 11 C 0.002 3.998 12 C -0.526 4.526 13 H 0.098 0.902 14 C -0.132 4.132 15 N -0.540 5.540 16 Si 0.692 3.308 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.193 1.193 20 C -0.052 4.052 21 C -0.097 4.097 22 C -0.200 4.200 23 C -0.192 4.192 24 C -0.221 4.221 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.038 0.962 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.473 7.383 8.107 15.163 hybrid contribution 0.470 -1.408 0.867 1.719 sum 10.943 5.975 8.975 15.362 Atomic orbital electron populations 1.20756 0.90125 1.01854 1.03650 1.19915 0.97039 0.91932 0.97817 1.20877 0.92894 0.98055 0.99860 1.21007 0.95034 0.96671 1.04987 1.17627 0.76513 0.94710 1.04875 1.91464 1.29423 1.97478 1.94248 1.21028 0.94550 0.96817 1.04217 1.19701 0.91883 0.95757 0.96395 1.21933 0.98509 0.93267 0.94342 1.62227 1.15129 1.43618 1.02353 1.21101 0.91278 0.89119 0.98348 1.20834 1.17327 1.15393 0.99018 0.90225 1.24792 0.96045 0.97312 0.95049 1.69876 1.24675 1.35442 1.24012 0.87065 0.79073 0.81615 0.83086 1.20413 1.21385 1.19259 1.22195 0.92809 0.92679 0.97468 1.21145 0.95513 0.98416 0.94616 1.22625 0.97312 0.98215 1.01888 1.21853 0.96374 1.00545 1.00384 1.22758 1.02269 0.99954 0.97149 0.89729 0.92786 0.90959 0.85415 0.85401 0.85335 0.91061 0.90427 0.94848 0.96684 0.92795 0.90460 0.92897 0.88123 0.96169 0.91713 0.93757 0.93434 0.92771 0.90165 0.93653 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.45 36.01 0.34 -1.11 16 2 C -0.07 -0.92 5.88 -104.61 -0.62 -1.53 16 3 C -0.10 -1.20 9.70 -39.59 -0.38 -1.58 16 4 C -0.16 -1.93 10.03 -39.51 -0.40 -2.33 16 5 C 0.08 1.12 7.30 -39.42 -0.29 0.83 16 6 F -0.15 -2.06 17.27 2.25 0.04 -2.02 16 7 C -0.15 -2.04 8.62 -39.51 -0.34 -2.38 16 8 C -0.04 -0.53 4.49 -104.63 -0.47 -1.00 16 9 C 0.05 0.73 3.78 -4.97 -0.02 0.71 16 10 N -0.51 -9.49 4.51 -237.52 -1.07 -10.56 16 11 C 0.13 2.72 2.74 -4.97 -0.01 2.71 16 12 C -0.49 -12.42 5.81 -34.44 -0.20 -12.62 16 13 H 0.08 2.27 7.26 -52.48 -0.38 1.88 16 14 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 15 N -0.90 -26.15 13.96 55.43 0.77 -25.38 16 16 Si 0.86 20.41 26.53 -169.99 -4.51 15.90 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -5.99 6.58 56.52 0.37 -5.62 16 20 C 0.08 1.38 4.59 -3.83 -0.02 1.36 16 21 C -0.10 -1.61 0.77 -154.51 -0.12 -1.73 16 22 C -0.14 -2.86 7.23 37.16 0.27 -2.59 16 23 C -0.13 -1.97 8.17 37.16 0.30 -1.66 16 24 C -0.17 -2.59 6.33 37.16 0.24 -2.35 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.07 1.03 6.25 -51.93 -0.32 0.71 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.13 1.68 7.18 -52.49 -0.38 1.31 16 31 H 0.07 1.07 3.03 -51.93 -0.16 0.91 16 32 H 0.08 1.20 6.52 -51.92 -0.34 0.86 16 33 H 0.03 0.73 1.38 -51.93 -0.07 0.66 16 34 H 0.02 0.34 7.24 -51.93 -0.38 -0.04 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.08 1.56 6.88 -51.93 -0.36 1.20 16 37 H 0.05 0.89 5.93 -51.93 -0.31 0.58 16 38 H 0.10 2.31 5.09 -51.93 -0.26 2.04 16 39 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 40 H 0.06 1.39 4.21 -51.93 -0.22 1.17 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.38 3.81 -51.93 -0.20 1.18 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.73 5.70 -51.93 -0.30 0.44 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -27.16 334.64 -8.15 -35.31 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.61 Total: 5.24 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -1.81 Total: -23.53 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.30 Total: -35.94 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.51 Total: 15.90 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.16 -8.15 -35.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352723027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.665 kcal (2) G-P(sol) polarization free energy of solvation -27.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds