Wall clock time and date at job start Tue Mar 31 2020 07:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38266 * 119.97548 * 2 1 4 4 C 1.38175 * 120.02609 * 179.97438 * 3 2 1 5 5 C 1.38483 * 119.96982 * 0.02562 * 4 3 2 6 6 F 1.35108 * 120.02190 * 179.97438 * 5 4 3 7 7 C 1.38440 * 119.95383 * 359.97438 * 5 4 3 8 8 C 1.38220 * 119.97138 * 359.73946 * 7 5 4 9 9 C 1.50697 * 119.98602 * 180.27598 * 8 7 5 10 10 N 1.46908 * 109.47029 * 254.05806 * 9 8 7 11 11 C 1.46907 * 110.99757 * 190.33841 * 10 9 8 12 12 C 1.50695 * 109.46930 * 169.97961 * 11 10 9 13 13 H 1.08003 * 119.99777 * 2.14561 * 12 11 10 14 14 C 1.37878 * 119.99842 * 182.14440 * 12 11 10 15 15 N 1.31523 * 119.99815 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 119.99980 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47219 * 90.00233 * 16 14 12 18 18 H 1.48502 * 109.47332 * 209.99892 * 16 14 12 19 19 H 1.48501 * 109.47515 * 330.00079 * 16 14 12 20 20 C 1.46897 * 110.99803 * 66.38581 * 10 9 8 21 21 C 1.52996 * 109.47106 * 80.55983 * 20 10 9 22 22 C 1.53003 * 109.47481 * 77.76934 * 21 20 10 23 23 C 1.53005 * 109.47362 * 197.77002 * 21 20 10 24 24 C 1.53000 * 109.47426 * 317.76834 * 21 20 10 25 25 H 1.08991 * 109.47079 * 89.99875 * 1 2 3 26 26 H 1.09000 * 109.46821 * 329.99910 * 1 2 3 27 27 H 1.08998 * 109.47168 * 210.00702 * 1 2 3 28 28 H 1.07998 * 119.98980 * 0.02562 * 3 2 1 29 29 H 1.07992 * 120.01536 * 180.02562 * 4 3 2 30 30 H 1.08001 * 120.01219 * 179.97438 * 7 5 4 31 31 H 1.08991 * 109.47246 * 14.05775 * 9 8 7 32 32 H 1.09008 * 109.46960 * 134.06371 * 9 8 7 33 33 H 1.08999 * 109.46736 * 289.98494 * 11 10 9 34 34 H 1.09004 * 109.46718 * 49.97932 * 11 10 9 35 35 H 0.97000 * 119.99562 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47052 * 200.55389 * 20 10 9 37 37 H 1.08994 * 109.47436 * 320.55830 * 20 10 9 38 38 H 1.09004 * 109.46539 * 22.21250 * 22 21 20 39 39 H 1.08999 * 109.47113 * 142.20896 * 22 21 20 40 40 H 1.08997 * 109.47368 * 262.21627 * 22 21 20 41 41 H 1.09001 * 109.46474 * 59.99969 * 23 21 20 42 42 H 1.08995 * 109.47570 * 179.97438 * 23 21 20 43 43 H 1.09000 * 109.46726 * 300.00167 * 23 21 20 44 44 H 1.09007 * 109.47102 * 63.21857 * 24 21 20 45 45 H 1.08997 * 109.47741 * 183.21783 * 24 21 20 46 46 H 1.08999 * 109.47247 * 303.22158 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 -0.0001 0.0005 6 9 5.6235 -0.0001 0.0005 7 6 3.5797 -1.1987 0.0005 8 6 2.1975 -1.1974 0.0060 9 6 1.4432 -2.5020 0.0123 10 7 0.8634 -2.7388 -1.3167 11 6 -0.0770 -3.8670 -1.2873 12 6 -0.8310 -3.9265 -2.5907 13 1 -0.6071 -3.2204 -3.3767 14 6 -1.8066 -4.8822 -2.7798 15 7 -2.4642 -4.9344 -3.9176 16 14 -2.1932 -6.1037 -1.4205 17 1 -3.2562 -5.5492 -0.5442 18 1 -2.6613 -7.3794 -2.0197 19 1 -0.9698 -6.3539 -0.6169 20 6 1.9154 -2.9563 -2.3187 21 6 2.4091 -4.4020 -2.2342 22 6 1.4005 -5.3263 -2.9193 23 6 3.7651 -4.5195 -2.9331 24 6 2.5555 -4.8060 -0.7658 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8899 0.5139 28 1 1.6573 2.1327 0.0004 29 1 4.1190 2.1345 0.0010 30 1 4.1191 -2.1344 0.0001 31 1 2.1252 -3.3149 0.2612 32 1 0.6454 -2.4568 0.7538 33 1 0.4745 -4.7961 -1.1437 34 1 -0.7810 -3.7317 -0.4661 35 1 -3.1508 -5.6066 -4.0504 36 1 1.5136 -2.7672 -3.3141 37 1 2.7459 -2.2770 -2.1269 38 1 0.8017 -4.7508 -3.6254 39 1 1.9331 -6.1140 -3.4522 40 1 0.7481 -5.7723 -2.1687 41 1 4.4836 -3.8611 -2.4449 42 1 4.1171 -5.5493 -2.8726 43 1 3.6608 -4.2317 -3.9792 44 1 1.5791 -4.7773 -0.2820 45 1 2.9613 -5.8158 -0.7055 46 1 3.2302 -4.1127 -0.2637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352723027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:18 Heat of formation + Delta-G solvation = 5.811633 kcal Electronic energy + Delta-G solvation = -25351.701717 eV Core-core repulsion = 21963.859078 eV Total energy + Delta-G solvation = -3387.842638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.81819 -41.43689 -39.72732 -35.31481 -34.79260 -33.19393 -32.58928 -30.22259 -29.16368 -27.60839 -27.52423 -26.91654 -25.30234 -23.20571 -22.35420 -21.34495 -19.77219 -18.93689 -18.07853 -17.53392 -16.76750 -16.54540 -16.50161 -16.34588 -16.07868 -15.52167 -14.95147 -14.84056 -14.63330 -14.53605 -14.33361 -14.05324 -13.94349 -13.20909 -13.10362 -12.96295 -12.86214 -12.73840 -12.54331 -12.47902 -12.40539 -12.36412 -12.31417 -11.95228 -11.75618 -11.64276 -11.48337 -11.38159 -11.15482 -10.99001 -10.54534 -9.84899 -9.32359 -8.56656 -8.14881 -6.06560 0.26529 0.32236 1.36100 1.38527 1.45658 2.41019 2.63539 3.19603 3.29053 3.53261 3.80813 3.88341 4.01421 4.03742 4.10633 4.15152 4.27395 4.34644 4.51047 4.66218 4.70389 4.72303 4.75392 4.83975 4.90389 4.93727 4.96497 4.99505 5.04986 5.06807 5.08804 5.15851 5.16748 5.23027 5.35215 5.36010 5.38564 5.48374 5.48882 5.62687 5.71942 5.79827 5.95776 6.04312 6.15752 6.51865 6.81019 6.90406 7.47595 9.02012 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.018806 B = 0.005458 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.506260 B = 5128.998277 C = 5967.312999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.079 4.079 3 C -0.095 4.095 4 C -0.152 4.152 5 C 0.071 3.929 6 F -0.150 7.150 7 C -0.150 4.150 8 C -0.051 4.051 9 C 0.051 3.949 10 N -0.523 5.523 11 C 0.136 3.864 12 C -0.468 4.468 13 H 0.035 0.965 14 C 0.014 3.986 15 N -0.952 5.952 16 Si 0.920 3.080 17 H -0.274 1.274 18 H -0.292 1.292 19 H -0.244 1.244 20 C 0.084 3.916 21 C -0.093 4.093 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.161 4.161 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.031 0.969 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.004 7.582 10.706 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.080 4.080 3 C -0.113 4.113 4 C -0.171 4.171 5 C 0.052 3.948 6 F -0.129 7.129 7 C -0.169 4.169 8 C -0.052 4.052 9 C -0.075 4.075 10 N -0.245 5.245 11 C 0.010 3.990 12 C -0.507 4.507 13 H 0.053 0.947 14 C -0.182 4.182 15 N -0.595 5.595 16 Si 0.746 3.254 17 H -0.200 1.200 18 H -0.218 1.218 19 H -0.167 1.167 20 C -0.044 4.044 21 C -0.095 4.095 22 C -0.193 4.193 23 C -0.187 4.187 24 C -0.217 4.217 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.155 0.845 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.641 7.906 10.501 18.237 hybrid contribution -0.140 -1.428 0.071 1.436 sum 12.501 6.479 10.572 17.607 Atomic orbital electron populations 1.20684 0.90344 1.02603 1.02296 1.20073 0.97095 0.92595 0.98240 1.21156 0.93058 0.98453 0.98585 1.21321 0.95134 0.97278 1.03364 1.17795 0.76501 0.95208 1.05342 1.91460 1.29601 1.97510 1.94318 1.21082 0.94210 0.97496 1.04106 1.19603 0.92216 0.95340 0.98031 1.21912 0.98821 0.94546 0.92249 1.62037 1.15709 1.42327 1.04435 1.20903 0.91695 0.90898 0.95539 1.20947 1.16833 1.13422 0.99486 0.94670 1.25499 0.96244 0.99395 0.97059 1.70037 1.26085 1.36851 1.26498 0.86133 0.79740 0.79008 0.80539 1.20002 1.21832 1.16725 1.22052 0.92746 0.94021 0.95572 1.21095 0.95882 0.96607 0.95882 1.22444 0.97549 0.98508 1.00813 1.21800 0.95112 1.01833 0.99930 1.22672 1.02017 1.01415 0.95595 0.92072 0.90246 0.92097 0.82777 0.82939 0.84513 0.89816 0.90382 0.93615 0.96926 0.93095 0.94029 0.91285 0.92125 0.94965 0.93265 0.91924 0.92176 0.93349 0.91665 0.92262 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.68 9.45 71.24 0.67 -2.01 16 2 C -0.08 -2.05 5.88 -19.86 -0.12 -2.17 16 3 C -0.09 -2.02 9.70 22.26 0.22 -1.80 16 4 C -0.15 -3.22 10.03 22.31 0.22 -3.00 16 5 C 0.07 1.73 7.30 22.38 0.16 1.89 16 6 F -0.15 -3.78 17.27 44.97 0.78 -3.01 16 7 C -0.15 -3.78 8.62 22.31 0.19 -3.58 16 8 C -0.05 -1.40 4.49 -19.87 -0.09 -1.48 16 9 C 0.05 1.52 3.78 85.55 0.32 1.85 16 10 N -0.52 -19.40 4.51 -905.36 -4.08 -23.48 16 11 C 0.14 5.85 2.74 85.55 0.23 6.08 16 12 C -0.47 -24.88 5.81 25.60 0.15 -24.73 16 13 H 0.04 2.15 7.26 -2.91 -0.02 2.13 16 14 C 0.01 0.78 5.29 84.65 0.45 1.22 16 15 N -0.95 -57.90 13.96 21.45 0.30 -57.60 16 16 Si 0.92 42.40 26.53 68.60 1.82 44.22 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.24 -10.18 6.58 99.48 0.65 -9.52 16 20 C 0.08 3.02 4.59 86.30 0.40 3.42 16 21 C -0.09 -3.03 0.77 -52.18 -0.04 -3.07 16 22 C -0.14 -5.45 7.23 71.98 0.52 -4.93 16 23 C -0.13 -3.49 8.17 71.98 0.59 -2.91 16 24 C -0.16 -4.58 6.33 71.98 0.46 -4.12 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 27 H 0.06 1.70 6.25 -2.39 -0.01 1.69 16 28 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.14 3.14 7.18 -2.91 -0.02 3.12 16 31 H 0.08 2.29 3.03 -2.39 -0.01 2.28 16 32 H 0.08 2.31 6.52 -2.38 -0.02 2.30 16 33 H 0.05 1.93 1.38 -2.39 0.00 1.93 16 34 H 0.01 0.56 7.24 -2.38 -0.02 0.54 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.04 1.77 6.88 -2.39 -0.02 1.75 16 37 H 0.07 2.24 5.93 -2.39 -0.01 2.22 16 38 H 0.06 2.92 5.09 -2.39 -0.01 2.90 16 39 H 0.03 1.17 7.72 -2.39 -0.02 1.15 16 40 H 0.05 2.09 4.21 -2.39 -0.01 2.08 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 2.07 3.81 -2.38 -0.01 2.06 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.07 1.80 5.70 -2.39 -0.01 1.79 16 Total: -1.00 -61.16 334.64 4.09 -57.07 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.94 Total: 22.13 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 4.34 Total: -39.34 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -3.78 Total: -81.08 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.82 Total: 44.22 kcal Total: -61.16 4.09 -57.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352723027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.883 kcal (2) G-P(sol) polarization free energy of solvation -61.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds