Wall clock time and date at job start Tue Mar 31 2020 07:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.97287 * 2 1 4 4 C 1.38183 * 120.02227 * 179.97438 * 3 2 1 5 5 C 1.38479 * 119.97587 * 359.97438 * 4 3 2 6 6 F 1.35095 * 120.02299 * 179.97438 * 5 4 3 7 7 C 1.38435 * 119.94666 * 359.97438 * 5 4 3 8 8 C 1.38222 * 119.97874 * 359.75282 * 7 5 4 9 9 C 1.50702 * 119.99250 * 180.27469 * 8 7 5 10 10 N 1.46903 * 109.47011 * 106.85762 * 9 8 7 11 11 C 1.46893 * 111.00029 * 287.55745 * 10 9 8 12 12 C 1.50704 * 109.47165 * 76.44895 * 11 10 9 13 13 H 1.08005 * 119.99630 * 5.01748 * 12 11 10 14 14 C 1.37880 * 120.00257 * 185.01354 * 12 11 10 15 15 N 1.31512 * 120.00000 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 119.99855 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47423 * 89.99741 * 16 14 12 18 18 H 1.48500 * 109.47272 * 209.99682 * 16 14 12 19 19 H 1.48500 * 109.47482 * 329.99807 * 16 14 12 20 20 C 1.46906 * 110.99422 * 163.60603 * 10 9 8 21 21 C 1.52998 * 109.46721 * 190.00064 * 20 10 9 22 22 C 1.52999 * 109.46861 * 180.02562 * 21 20 10 23 23 C 1.52997 * 109.47583 * 65.00127 * 22 21 20 24 24 C 1.53005 * 109.47065 * 185.00171 * 22 21 20 25 25 H 1.08995 * 109.47309 * 85.62467 * 1 2 3 26 26 H 1.09003 * 109.46855 * 325.62291 * 1 2 3 27 27 H 1.09006 * 109.47289 * 205.62810 * 1 2 3 28 28 H 1.07994 * 119.98692 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00922 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.01249 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.46800 * 226.86363 * 9 8 7 32 32 H 1.09004 * 109.46765 * 346.85958 * 9 8 7 33 33 H 1.08997 * 109.47157 * 196.44598 * 11 10 9 34 34 H 1.09000 * 109.47369 * 316.44912 * 11 10 9 35 35 H 0.96993 * 120.00149 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46942 * 310.00037 * 20 10 9 37 37 H 1.08998 * 109.46734 * 70.00205 * 20 10 9 38 38 H 1.09000 * 109.47390 * 299.99698 * 21 20 10 39 39 H 1.09002 * 109.47305 * 59.99807 * 21 20 10 40 40 H 1.09009 * 109.47190 * 304.99781 * 22 21 20 41 41 H 1.08995 * 109.47031 * 59.99578 * 23 22 21 42 42 H 1.08996 * 109.47426 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.46903 * 299.99913 * 23 22 21 44 44 H 1.09000 * 109.47470 * 59.99744 * 24 22 21 45 45 H 1.09000 * 109.47312 * 180.02562 * 24 22 21 46 46 H 1.09002 * 109.47158 * 299.99784 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5796 1.1990 0.0005 5 6 4.2725 0.0000 0.0016 6 9 5.6235 0.0000 0.0016 7 6 3.5798 -1.1986 0.0027 8 6 2.1976 -1.1974 0.0078 9 6 1.4431 -2.5019 0.0153 10 7 0.8553 -2.7200 1.3438 11 6 1.8903 -3.0652 2.3272 12 6 2.6444 -1.8210 2.7206 13 1 2.3297 -0.8580 2.3464 14 6 3.7359 -1.9122 3.5580 15 7 4.3942 -0.8265 3.9008 16 14 4.2805 -3.5779 4.2045 17 1 5.2634 -4.1761 3.2658 18 1 4.9098 -3.4094 5.5390 19 1 3.1012 -4.4727 4.3229 20 6 -0.1890 -3.7521 1.2942 21 6 -0.9446 -3.7772 2.6243 22 6 -2.0318 -4.8525 2.5730 23 6 -1.3801 -6.2314 2.4518 24 6 -2.8676 -4.7943 3.8533 25 1 -0.3633 0.0784 -1.0246 26 1 -0.3633 0.8482 0.5803 27 1 -0.3634 -0.9266 0.4445 28 1 1.6572 2.1326 0.0004 29 1 4.1189 2.1346 0.0010 30 1 4.1191 -2.1343 0.0031 31 1 0.6502 -2.4673 -0.7318 32 1 2.1267 -3.3183 -0.2180 33 1 1.4221 -3.5005 3.2100 34 1 2.5814 -3.7858 1.8898 35 1 5.1618 -0.8906 4.4902 36 1 -0.8842 -3.5270 0.4855 37 1 0.2699 -4.7251 1.1187 38 1 -0.2494 -4.0023 3.4331 39 1 -1.4035 -2.8042 2.8000 40 1 -2.6754 -4.6777 1.7107 41 1 -0.7366 -6.4062 3.3140 42 1 -2.1546 -6.9974 2.4148 43 1 -0.7846 -6.2729 1.5397 44 1 -3.3320 -3.8119 3.9397 45 1 -3.6418 -5.5606 3.8170 46 1 -2.2241 -4.9690 4.7156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352724383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:12 Heat of formation + Delta-G solvation = -31.814535 kcal Electronic energy + Delta-G solvation = -24732.662035 eV Core-core repulsion = 21343.187804 eV Total energy + Delta-G solvation = -3389.474231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.01680 -39.04641 -37.37847 -35.38791 -32.45250 -31.71662 -31.12062 -28.87046 -27.71095 -27.08662 -25.96990 -24.40408 -22.57566 -21.61344 -20.74700 -19.74443 -19.44949 -16.85793 -16.41358 -15.89333 -15.22093 -14.96143 -14.75767 -14.66853 -14.58549 -13.92309 -13.50423 -13.48661 -13.12450 -13.07189 -12.85189 -12.72799 -12.43568 -12.19081 -12.13111 -11.92626 -11.49933 -11.36298 -11.31643 -11.09086 -10.95135 -10.77265 -10.66095 -10.55615 -10.48768 -10.33779 -10.05207 -9.96661 -9.74748 -9.21945 -8.51133 -7.96848 -7.56494 -7.42128 -5.94131 -3.87693 2.00968 2.08937 3.29477 3.38031 3.39191 4.23961 4.48077 4.76196 5.02326 5.09357 5.12813 5.20794 5.35649 5.41369 5.45279 5.56308 5.65732 5.67905 5.78127 5.82964 5.85221 5.88225 5.91778 5.94109 6.00855 6.06703 6.11122 6.15153 6.20742 6.26367 6.33898 6.34751 6.56123 6.59245 6.64586 6.70531 6.86508 6.89646 6.94467 6.96850 7.08786 7.37026 7.69172 7.75919 7.89237 8.02074 8.74122 9.21235 9.67501 11.17927 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.006186 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.946918 B = 4525.013623 C = 5898.096443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.102 4.102 4 C -0.155 4.155 5 C 0.099 3.901 6 F -0.150 7.150 7 C -0.102 4.102 8 C -0.016 4.016 9 C 0.104 3.896 10 N -0.521 5.521 11 C 0.159 3.841 12 C -0.497 4.497 13 H 0.092 0.908 14 C 0.071 3.929 15 N -0.892 5.892 16 Si 0.861 3.139 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.270 1.270 20 C 0.054 3.946 21 C -0.111 4.111 22 C -0.095 4.095 23 C -0.149 4.149 24 C -0.145 4.145 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.030 0.970 34 H -0.018 1.018 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.311 -3.790 -7.776 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.082 4.082 3 C -0.120 4.120 4 C -0.174 4.174 5 C 0.080 3.920 6 F -0.129 7.129 7 C -0.122 4.122 8 C -0.016 4.016 9 C -0.023 4.023 10 N -0.245 5.245 11 C 0.033 3.967 12 C -0.535 4.535 13 H 0.110 0.890 14 C -0.130 4.130 15 N -0.531 5.531 16 Si 0.689 3.311 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.195 1.195 20 C -0.074 4.074 21 C -0.149 4.149 22 C -0.114 4.114 23 C -0.206 4.206 24 C -0.203 4.203 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.000 1.000 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.326 -3.306 -7.503 13.185 hybrid contribution 1.345 -1.632 0.528 2.180 sum -8.980 -4.938 -6.975 12.396 Atomic orbital electron populations 1.20775 0.91609 1.03957 1.00401 1.19505 0.95870 0.92135 1.00647 1.20604 0.92912 0.97417 1.01083 1.20820 0.94924 0.96402 1.05242 1.17460 0.76308 0.94640 1.03605 1.91420 1.29813 1.97488 1.94186 1.20685 0.94258 0.96415 1.00805 1.19077 0.91947 0.94267 0.96334 1.20865 0.96392 0.93553 0.91525 1.62006 1.13783 1.43030 1.05633 1.20330 0.88909 0.96853 0.90623 1.21160 1.10549 0.94140 1.27631 0.89046 1.24830 0.96504 0.95352 0.96333 1.69878 1.20043 1.27273 1.35950 0.87097 0.79167 0.86122 0.78735 1.20656 1.21393 1.19493 1.22132 0.94367 0.93322 0.97559 1.21671 0.96848 0.98486 0.97906 1.21101 0.96916 0.95373 0.98034 1.21897 1.00306 0.96401 1.02003 1.21821 0.99416 1.01306 0.97737 0.92913 0.92457 0.89518 0.86407 0.86209 0.86261 0.91260 0.94937 0.95254 1.00002 0.92989 0.92029 0.95796 0.91362 0.91145 0.91608 0.92798 0.93337 0.92577 0.92679 0.93254 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.45 36.01 0.34 -1.33 16 2 C -0.08 -1.47 5.36 -104.62 -0.56 -2.03 16 3 C -0.10 -1.82 9.72 -39.59 -0.38 -2.20 16 4 C -0.15 -2.98 10.03 -39.51 -0.40 -3.38 16 5 C 0.10 2.12 7.30 -39.42 -0.29 1.83 16 6 F -0.15 -3.31 17.27 2.25 0.04 -3.27 16 7 C -0.10 -2.16 8.04 -39.51 -0.32 -2.47 16 8 C -0.02 -0.30 3.23 -104.63 -0.34 -0.64 16 9 C 0.10 1.83 4.24 -4.97 -0.02 1.81 16 10 N -0.52 -9.87 3.33 -237.51 -0.79 -10.66 16 11 C 0.16 3.64 3.68 -4.98 -0.02 3.62 16 12 C -0.50 -13.32 7.28 -34.44 -0.25 -13.57 16 13 H 0.09 2.68 6.15 -52.48 -0.32 2.36 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 15 N -0.89 -27.01 13.96 55.43 0.77 -26.23 16 16 Si 0.86 21.49 27.37 -169.99 -4.65 16.84 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 19 H -0.27 -6.47 6.69 56.52 0.38 -6.09 16 20 C 0.05 0.84 4.70 -3.82 -0.02 0.82 16 21 C -0.11 -1.65 4.66 -26.73 -0.12 -1.78 16 22 C -0.10 -1.13 2.92 -90.62 -0.26 -1.39 16 23 C -0.15 -1.72 8.95 37.16 0.33 -1.39 16 24 C -0.15 -1.59 9.19 37.16 0.34 -1.25 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 27 H 0.09 1.37 5.85 -51.93 -0.30 1.07 16 28 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 30 H 0.12 2.51 7.99 -52.48 -0.42 2.09 16 31 H 0.07 1.02 7.24 -51.93 -0.38 0.65 16 32 H 0.03 0.57 7.59 -51.93 -0.39 0.18 16 33 H 0.03 0.69 5.28 -51.93 -0.27 0.42 16 34 H -0.02 -0.42 6.91 -51.93 -0.36 -0.78 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 0.83 7.86 -51.93 -0.41 0.42 16 37 H 0.02 0.37 6.54 -51.93 -0.34 0.03 16 38 H 0.07 1.17 6.25 -51.93 -0.32 0.85 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -29.82 358.94 -8.96 -38.78 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.67 Total: 0.58 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.06 Total: -21.43 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.02 Total: -36.89 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.65 Total: 16.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.82 -8.96 -38.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352724383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.961 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds