Wall clock time and date at job start Tue Mar 31 2020 07:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.97287 * 2 1 4 4 C 1.38183 * 120.02227 * 179.97438 * 3 2 1 5 5 C 1.38479 * 119.97587 * 359.97438 * 4 3 2 6 6 F 1.35095 * 120.02299 * 179.97438 * 5 4 3 7 7 C 1.38435 * 119.94666 * 359.97438 * 5 4 3 8 8 C 1.38222 * 119.97874 * 359.75282 * 7 5 4 9 9 C 1.50702 * 119.99250 * 180.27469 * 8 7 5 10 10 N 1.46903 * 109.47011 * 106.85762 * 9 8 7 11 11 C 1.46893 * 111.00029 * 287.55745 * 10 9 8 12 12 C 1.50704 * 109.47165 * 76.44895 * 11 10 9 13 13 H 1.08005 * 119.99630 * 5.01748 * 12 11 10 14 14 C 1.37880 * 120.00257 * 185.01354 * 12 11 10 15 15 N 1.31512 * 120.00000 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 119.99855 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47423 * 89.99741 * 16 14 12 18 18 H 1.48500 * 109.47272 * 209.99682 * 16 14 12 19 19 H 1.48500 * 109.47482 * 329.99807 * 16 14 12 20 20 C 1.46906 * 110.99422 * 163.60603 * 10 9 8 21 21 C 1.52998 * 109.46721 * 190.00064 * 20 10 9 22 22 C 1.52999 * 109.46861 * 180.02562 * 21 20 10 23 23 C 1.52997 * 109.47583 * 65.00127 * 22 21 20 24 24 C 1.53005 * 109.47065 * 185.00171 * 22 21 20 25 25 H 1.08995 * 109.47309 * 85.62467 * 1 2 3 26 26 H 1.09003 * 109.46855 * 325.62291 * 1 2 3 27 27 H 1.09006 * 109.47289 * 205.62810 * 1 2 3 28 28 H 1.07994 * 119.98692 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00922 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.01249 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.46800 * 226.86363 * 9 8 7 32 32 H 1.09004 * 109.46765 * 346.85958 * 9 8 7 33 33 H 1.08997 * 109.47157 * 196.44598 * 11 10 9 34 34 H 1.09000 * 109.47369 * 316.44912 * 11 10 9 35 35 H 0.96993 * 120.00149 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.46942 * 310.00037 * 20 10 9 37 37 H 1.08998 * 109.46734 * 70.00205 * 20 10 9 38 38 H 1.09000 * 109.47390 * 299.99698 * 21 20 10 39 39 H 1.09002 * 109.47305 * 59.99807 * 21 20 10 40 40 H 1.09009 * 109.47190 * 304.99781 * 22 21 20 41 41 H 1.08995 * 109.47031 * 59.99578 * 23 22 21 42 42 H 1.08996 * 109.47426 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.46903 * 299.99913 * 23 22 21 44 44 H 1.09000 * 109.47470 * 59.99744 * 24 22 21 45 45 H 1.09000 * 109.47312 * 180.02562 * 24 22 21 46 46 H 1.09002 * 109.47158 * 299.99784 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5796 1.1990 0.0005 5 6 4.2725 0.0000 0.0016 6 9 5.6235 0.0000 0.0016 7 6 3.5798 -1.1986 0.0027 8 6 2.1976 -1.1974 0.0078 9 6 1.4431 -2.5019 0.0153 10 7 0.8553 -2.7200 1.3438 11 6 1.8903 -3.0652 2.3272 12 6 2.6444 -1.8210 2.7206 13 1 2.3297 -0.8580 2.3464 14 6 3.7359 -1.9122 3.5580 15 7 4.3942 -0.8265 3.9008 16 14 4.2805 -3.5779 4.2045 17 1 5.2634 -4.1761 3.2658 18 1 4.9098 -3.4094 5.5390 19 1 3.1012 -4.4727 4.3229 20 6 -0.1890 -3.7521 1.2942 21 6 -0.9446 -3.7772 2.6243 22 6 -2.0318 -4.8525 2.5730 23 6 -1.3801 -6.2314 2.4518 24 6 -2.8676 -4.7943 3.8533 25 1 -0.3633 0.0784 -1.0246 26 1 -0.3633 0.8482 0.5803 27 1 -0.3634 -0.9266 0.4445 28 1 1.6572 2.1326 0.0004 29 1 4.1189 2.1346 0.0010 30 1 4.1191 -2.1343 0.0031 31 1 0.6502 -2.4673 -0.7318 32 1 2.1267 -3.3183 -0.2180 33 1 1.4221 -3.5005 3.2100 34 1 2.5814 -3.7858 1.8898 35 1 5.1618 -0.8906 4.4902 36 1 -0.8842 -3.5270 0.4855 37 1 0.2699 -4.7251 1.1187 38 1 -0.2494 -4.0023 3.4331 39 1 -1.4035 -2.8042 2.8000 40 1 -2.6754 -4.6777 1.7107 41 1 -0.7366 -6.4062 3.3140 42 1 -2.1546 -6.9974 2.4148 43 1 -0.7846 -6.2729 1.5397 44 1 -3.3320 -3.8119 3.9397 45 1 -3.6418 -5.5606 3.8170 46 1 -2.2241 -4.9690 4.7156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352724383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:11 Heat of formation + Delta-G solvation = -46.907012 kcal Electronic energy + Delta-G solvation = -24733.316494 eV Core-core repulsion = 21343.187804 eV Total energy + Delta-G solvation = -3390.128690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.70183 -40.51903 -38.67721 -36.62265 -34.51647 -33.16016 -32.54301 -30.45787 -29.28410 -27.96922 -27.33419 -25.88152 -24.23004 -23.07388 -22.17707 -21.21582 -20.61388 -18.89507 -18.02088 -17.43386 -16.58239 -16.52733 -16.28980 -16.23736 -16.00622 -15.50833 -15.02725 -14.62410 -14.55169 -14.47122 -14.37226 -14.10896 -13.90577 -13.64650 -13.56099 -13.06782 -13.01960 -12.71907 -12.53642 -12.50041 -12.45469 -12.30715 -12.05531 -11.91053 -11.76648 -11.71022 -11.48624 -11.33863 -11.25640 -11.17653 -10.65269 -9.54940 -9.08006 -8.94237 -8.12463 -6.07609 0.48775 0.56970 1.28698 1.32215 1.39126 2.38449 2.75235 3.20626 3.38170 3.60528 3.94710 3.98485 4.05703 4.11838 4.18473 4.22223 4.42723 4.43782 4.51747 4.60239 4.65388 4.73800 4.75904 4.85941 4.88367 4.92665 4.96097 5.04641 5.05825 5.10564 5.12960 5.21320 5.23320 5.24116 5.28786 5.39524 5.44223 5.53358 5.56450 5.60629 5.64882 5.71715 5.89397 6.14610 6.26509 6.46258 6.75456 7.00942 7.50559 9.01932 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.006186 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.946918 B = 4525.013623 C = 5898.096443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.083 4.083 3 C -0.103 4.103 4 C -0.164 4.164 5 C 0.065 3.935 6 F -0.164 7.164 7 C -0.124 4.124 8 C -0.028 4.028 9 C 0.105 3.895 10 N -0.527 5.527 11 C 0.168 3.832 12 C -0.477 4.477 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.939 5.939 16 Si 0.914 3.086 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.252 1.252 20 C 0.055 3.945 21 C -0.107 4.107 22 C -0.089 4.089 23 C -0.148 4.148 24 C -0.145 4.145 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.152 0.848 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.028 0.972 33 H 0.028 0.972 34 H -0.025 1.025 35 H 0.256 0.744 36 H 0.093 0.907 37 H 0.027 0.973 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 -4.760 -8.840 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.182 4.182 5 C 0.046 3.954 6 F -0.143 7.143 7 C -0.143 4.143 8 C -0.028 4.028 9 C -0.022 4.022 10 N -0.250 5.250 11 C 0.041 3.959 12 C -0.516 4.516 13 H 0.081 0.919 14 C -0.182 4.182 15 N -0.581 5.581 16 Si 0.741 3.259 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.176 1.176 20 C -0.072 4.072 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.206 4.206 24 C -0.202 4.202 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.169 0.831 29 H 0.154 0.846 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.046 0.954 33 H 0.045 0.955 34 H -0.007 1.007 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.451 -4.301 -8.581 16.525 hybrid contribution 2.217 -1.261 0.791 2.670 sum -11.234 -5.561 -7.790 14.759 Atomic orbital electron populations 1.20807 0.88911 1.03999 1.02528 1.19991 0.97856 0.91655 0.98819 1.21055 0.92418 0.98967 0.99687 1.21137 0.95958 0.96288 1.04861 1.17869 0.76044 0.95899 1.05623 1.91370 1.30792 1.97608 1.94520 1.20766 0.95431 0.95801 1.02339 1.19371 0.91327 0.95915 0.96220 1.20961 0.97300 0.92394 0.91593 1.61880 1.13050 1.44533 1.05546 1.20061 0.89493 0.94552 0.91782 1.21322 1.09929 0.94532 1.25804 0.91928 1.25514 0.97145 0.98223 0.97294 1.70029 1.21009 1.29405 1.37652 0.86215 0.79190 0.82712 0.77801 1.20720 1.21672 1.17636 1.22261 0.93663 0.92417 0.98904 1.21628 0.97053 0.99266 0.96587 1.21066 0.96161 0.94333 0.99218 1.21895 1.00637 0.96785 1.01253 1.21819 0.99532 1.02081 0.96814 0.89670 0.91695 0.90060 0.83054 0.84579 0.87719 0.87537 0.95384 0.95453 1.00712 0.93504 0.88911 0.95463 0.94298 0.91844 0.89733 0.94249 0.91449 0.92706 0.92500 0.91459 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 9.45 71.24 0.67 -2.14 16 2 C -0.08 -2.84 5.36 -19.86 -0.11 -2.95 16 3 C -0.10 -3.53 9.72 22.26 0.22 -3.32 16 4 C -0.16 -6.33 10.03 22.31 0.22 -6.10 16 5 C 0.06 2.87 7.30 22.37 0.16 3.03 16 6 F -0.16 -7.63 17.27 44.97 0.78 -6.85 16 7 C -0.12 -5.39 8.04 22.31 0.18 -5.21 16 8 C -0.03 -1.05 3.23 -19.87 -0.06 -1.12 16 9 C 0.10 3.48 4.24 85.56 0.36 3.84 16 10 N -0.53 -18.99 3.33 -905.36 -3.02 -22.01 16 11 C 0.17 7.62 3.68 85.56 0.31 7.94 16 12 C -0.48 -25.96 7.28 25.60 0.19 -25.77 16 13 H 0.06 3.74 6.15 -2.91 -0.02 3.72 16 14 C 0.01 0.86 5.47 84.66 0.46 1.33 16 15 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16 16 Si 0.91 45.05 27.37 68.60 1.88 46.93 16 17 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 18 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 19 H -0.25 -11.59 6.69 99.48 0.67 -10.92 16 20 C 0.05 1.53 4.70 86.30 0.41 1.93 16 21 C -0.11 -2.96 4.66 30.59 0.14 -2.82 16 22 C -0.09 -1.84 2.92 -10.79 -0.03 -1.87 16 23 C -0.15 -3.02 8.95 71.98 0.64 -2.38 16 24 C -0.15 -2.81 9.19 71.98 0.66 -2.15 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 27 H 0.08 2.27 5.85 -2.38 -0.01 2.26 16 28 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.10 4.68 7.99 -2.91 -0.02 4.66 16 31 H 0.11 2.74 7.24 -2.39 -0.02 2.72 16 32 H 0.03 0.96 7.59 -2.38 -0.02 0.94 16 33 H 0.03 1.27 5.28 -2.39 -0.01 1.26 16 34 H -0.02 -1.16 6.91 -2.39 -0.02 -1.18 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.09 2.06 7.86 -2.39 -0.02 2.04 16 37 H 0.03 0.76 6.54 -2.39 -0.02 0.75 16 38 H 0.04 1.29 6.25 -2.39 -0.01 1.28 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.12 6.56 -2.39 -0.02 1.10 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -66.61 358.94 5.27 -61.34 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.90 Total: 16.83 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 4.44 Total: -37.76 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.72 Total: -80.48 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.78 Total: -6.85 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -66.61 5.27 -61.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352724383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.431 kcal (2) G-P(sol) polarization free energy of solvation -66.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds