Wall clock time and date at job start Tue Mar 31 2020 07:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38220 * 119.98714 * 2 1 4 4 C 1.38440 * 119.97496 * 179.97438 * 3 2 1 5 5 F 1.35103 * 120.02726 * 179.97438 * 4 3 2 6 6 C 1.38485 * 119.95027 * 0.02562 * 4 3 2 7 7 C 1.38178 * 119.96960 * 359.74196 * 6 4 3 8 8 C 1.38223 * 119.98756 * 179.97438 * 2 1 3 9 9 C 1.50699 * 119.97693 * 0.02562 * 8 2 1 10 10 N 1.46902 * 109.47324 * 73.99880 * 9 8 2 11 11 C 1.46897 * 111.00101 * 189.85444 * 10 9 8 12 12 C 1.50694 * 109.47181 * 70.21080 * 11 10 9 13 13 H 1.08004 * 119.99853 * 4.56565 * 12 11 10 14 14 C 1.37884 * 120.00232 * 184.57144 * 12 11 10 15 15 N 1.31513 * 119.99661 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47045 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46844 * 119.99520 * 16 14 12 19 19 H 1.48497 * 109.46877 * 239.99564 * 16 14 12 20 20 C 1.46902 * 110.99478 * 65.90021 * 10 9 8 21 21 C 1.52995 * 109.46962 * 189.99780 * 20 10 9 22 22 C 1.53005 * 109.47059 * 180.02562 * 21 20 10 23 23 C 1.53002 * 109.47076 * 65.00551 * 22 21 20 24 24 C 1.53008 * 109.47163 * 184.99927 * 22 21 20 25 25 H 1.08996 * 109.47546 * 264.40881 * 1 2 3 26 26 H 1.09000 * 109.47210 * 24.41235 * 1 2 3 27 27 H 1.09007 * 109.46708 * 144.40994 * 1 2 3 28 28 H 1.08005 * 120.01473 * 359.95668 * 3 2 1 29 29 H 1.07997 * 120.01228 * 180.02562 * 6 4 3 30 30 H 1.08000 * 119.98433 * 180.25319 * 7 6 4 31 31 H 1.08999 * 109.46573 * 314.00376 * 9 8 2 32 32 H 1.08996 * 109.47443 * 194.00675 * 9 8 2 33 33 H 1.09003 * 109.47110 * 190.21130 * 11 10 9 34 34 H 1.09002 * 109.47209 * 310.20955 * 11 10 9 35 35 H 0.96993 * 119.99963 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47760 * 310.00108 * 20 10 9 37 37 H 1.09003 * 109.47195 * 70.00369 * 20 10 9 38 38 H 1.09000 * 109.47318 * 300.00185 * 21 20 10 39 39 H 1.08995 * 109.47299 * 60.00332 * 21 20 10 40 40 H 1.08999 * 109.47442 * 305.00142 * 22 21 20 41 41 H 1.09007 * 109.46811 * 299.99723 * 23 22 21 42 42 H 1.08999 * 109.47319 * 59.99515 * 23 22 21 43 43 H 1.08999 * 109.47025 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.46693 * 59.99983 * 24 22 21 45 45 H 1.08999 * 109.47129 * 179.97438 * 24 22 21 46 46 H 1.08999 * 109.47117 * 300.00414 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1969 0.0005 5 9 4.2585 2.3664 0.0000 6 6 4.2734 -0.0032 0.0005 7 6 3.5805 -1.1987 0.0054 8 6 2.1978 -1.1972 0.0005 9 6 1.4435 -2.5018 0.0005 10 7 0.8684 -2.7350 -1.3310 11 6 -0.0633 -3.8705 -1.3105 12 6 -1.3038 -3.4886 -0.5447 13 1 -1.4237 -2.4793 -0.1795 14 6 -2.2857 -4.4278 -0.3102 15 7 -2.1398 -5.6567 -0.7553 16 14 -3.8229 -3.9547 0.6396 17 1 -3.7440 -2.5235 1.0279 18 1 -5.0185 -4.1712 -0.2142 19 1 -3.9281 -4.7933 1.8606 20 6 1.9241 -2.9382 -2.3321 21 6 1.3077 -2.9285 -3.7323 22 6 2.4072 -3.1408 -4.7750 23 6 3.0069 -4.5382 -4.6065 24 6 1.8120 -3.0071 -6.1782 25 1 -0.3634 -0.1001 1.0227 26 1 -0.3633 0.9358 -0.4247 27 1 -0.3633 -0.8358 -0.5981 28 1 1.6578 2.1325 -0.0007 29 1 5.3533 -0.0046 0.0014 30 1 4.1193 -2.1347 0.0095 31 1 0.6434 -2.4588 0.7394 32 1 2.1247 -3.3154 0.2497 33 1 -0.3345 -4.1364 -2.3322 34 1 0.4137 -4.7233 -0.8275 35 1 -2.8307 -6.3173 -0.5906 36 1 2.6590 -2.1370 -2.2530 37 1 2.4118 -3.8971 -2.1564 38 1 0.5729 -3.7297 -3.8114 39 1 0.8201 -1.9697 -3.9081 40 1 3.1871 -2.3917 -4.6383 41 1 3.4310 -4.6335 -3.6068 42 1 2.2270 -5.2873 -4.7432 43 1 3.7905 -4.6893 -5.3490 44 1 1.3847 -2.0116 -6.2983 45 1 2.5954 -3.1579 -6.9210 46 1 1.0321 -3.7562 -6.3149 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353416536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:13 Heat of formation + Delta-G solvation = -56.350605 kcal Electronic energy + Delta-G solvation = -24183.432942 eV Core-core repulsion = 20792.894747 eV Total energy + Delta-G solvation = -3390.538195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.84380 -40.64756 -38.67737 -36.66020 -34.62568 -33.63552 -32.29706 -30.33842 -28.85439 -27.99770 -27.68621 -25.98817 -24.51376 -23.23417 -22.36613 -21.19346 -20.67309 -18.60887 -18.05859 -17.40144 -16.97090 -16.67902 -16.52823 -16.16728 -15.80081 -15.57982 -15.06876 -14.74448 -14.45003 -14.40818 -14.19746 -14.08366 -13.94404 -13.78078 -13.49956 -13.13647 -12.98755 -12.82737 -12.76444 -12.58593 -12.45581 -12.37869 -12.20229 -12.09592 -11.86524 -11.63760 -11.49210 -11.45205 -11.22506 -11.12623 -10.52914 -9.80395 -9.41193 -8.90151 -8.13773 -6.21614 0.20962 0.33807 1.42486 1.44525 1.56206 2.43642 2.60661 3.19752 3.31311 3.40584 3.81647 3.86073 3.99457 4.02896 4.09738 4.19348 4.26997 4.34504 4.41813 4.61318 4.72604 4.73901 4.78404 4.80539 4.84549 4.90604 4.91828 4.98017 5.00966 5.05558 5.14495 5.16977 5.19242 5.21912 5.30150 5.33659 5.36067 5.40205 5.51785 5.54619 5.59825 5.75426 5.83820 6.02127 6.16150 6.40780 6.70608 6.96523 7.47689 8.97068 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.005842 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.505747 B = 4792.022406 C = 6930.379215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 C -0.160 4.160 4 C 0.083 3.917 5 F -0.147 7.147 6 C -0.157 4.157 7 C -0.085 4.085 8 C -0.090 4.090 9 C 0.106 3.894 10 N -0.528 5.528 11 C 0.207 3.793 12 C -0.512 4.512 13 H 0.072 0.928 14 C 0.003 3.997 15 N -0.936 5.936 16 Si 0.957 3.043 17 H -0.259 1.259 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.060 3.940 21 C -0.104 4.104 22 C -0.090 4.090 23 C -0.146 4.146 24 C -0.143 4.143 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.012 0.988 34 H -0.041 1.041 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.112 10.044 -2.676 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.036 4.036 3 C -0.179 4.179 4 C 0.064 3.936 5 F -0.126 7.126 6 C -0.176 4.176 7 C -0.104 4.104 8 C -0.091 4.091 9 C -0.022 4.022 10 N -0.252 5.252 11 C 0.081 3.919 12 C -0.550 4.550 13 H 0.090 0.910 14 C -0.195 4.195 15 N -0.577 5.577 16 Si 0.783 3.217 17 H -0.183 1.183 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.068 4.068 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.203 4.203 24 C -0.200 4.200 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.030 0.970 34 H -0.023 1.023 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.775 10.338 -2.812 15.920 hybrid contribution -0.542 -0.924 0.751 1.308 sum 11.233 9.414 -2.062 14.800 Atomic orbital electron populations 1.20992 0.90377 1.04139 1.02759 1.19686 0.96798 0.91449 0.95682 1.21143 0.92345 0.99413 1.05009 1.17799 0.90249 0.81391 1.04151 1.91463 1.80350 1.46600 1.94189 1.21219 1.01589 0.90445 1.04298 1.21070 0.92838 0.98431 0.98014 1.19879 0.93827 0.94581 1.00779 1.20802 0.96704 0.92385 0.92310 1.62041 1.16247 1.42241 1.04636 1.19432 0.90615 0.86329 0.95513 1.21589 1.02688 0.96962 1.33756 0.90983 1.25811 1.01678 0.94819 0.97160 1.70094 1.35557 1.04012 1.48077 0.85502 0.79216 0.78871 0.78099 1.18256 1.20970 1.20993 1.22130 0.93552 0.98890 0.92239 1.21574 0.97783 1.01106 0.93680 1.21066 0.97126 0.97858 0.94810 1.21865 1.00544 0.96198 1.01676 1.21799 1.00868 1.01554 0.95765 0.91265 0.90764 0.89844 0.83674 0.82771 0.83951 0.90798 0.95466 0.96964 1.02280 0.93052 0.90536 0.96324 0.94237 0.92332 0.90417 0.93179 0.94118 0.91144 0.92584 0.91218 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.22 71.24 0.66 -3.20 16 2 C -0.04 -1.05 5.88 -19.87 -0.12 -1.17 16 3 C -0.16 -4.18 9.66 22.31 0.22 -3.96 16 4 C 0.08 2.10 7.30 22.38 0.16 2.27 16 5 F -0.15 -3.71 17.27 44.97 0.78 -2.94 16 6 C -0.16 -3.60 10.03 22.31 0.22 -3.37 16 7 C -0.09 -2.14 8.91 22.26 0.20 -1.94 16 8 C -0.09 -2.74 4.40 -19.86 -0.09 -2.82 16 9 C 0.11 3.87 4.14 85.56 0.35 4.22 16 10 N -0.53 -21.26 3.31 -905.38 -3.00 -24.26 16 11 C 0.21 10.48 4.60 85.56 0.39 10.88 16 12 C -0.51 -27.41 8.35 25.60 0.21 -27.20 16 13 H 0.07 3.72 6.11 -2.91 -0.02 3.70 16 14 C 0.00 0.16 5.46 84.66 0.46 0.62 16 15 N -0.94 -55.34 13.29 21.45 0.28 -55.05 16 16 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 C 0.06 2.05 4.58 86.30 0.40 2.45 16 21 C -0.10 -3.43 4.64 30.59 0.14 -3.28 16 22 C -0.09 -2.29 2.92 -10.79 -0.03 -2.32 16 23 C -0.15 -3.63 8.95 71.98 0.64 -2.98 16 24 C -0.14 -3.25 9.19 71.98 0.66 -2.59 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 1.94 8.05 -2.39 -0.02 1.92 16 27 H 0.08 3.11 4.81 -2.38 -0.01 3.10 16 28 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 29 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.14 3.09 7.99 -2.91 -0.02 3.07 16 31 H 0.07 3.00 6.60 -2.39 -0.02 2.99 16 32 H 0.03 0.99 7.92 -2.39 -0.02 0.97 16 33 H 0.01 0.68 5.97 -2.39 -0.01 0.66 16 34 H -0.04 -2.29 8.08 -2.39 -0.02 -2.31 16 35 H 0.26 14.61 8.31 -92.71 -0.77 13.83 16 36 H 0.08 2.37 6.42 -2.39 -0.02 2.36 16 37 H 0.02 0.66 6.54 -2.39 -0.02 0.65 16 38 H 0.04 1.54 6.30 -2.39 -0.02 1.53 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.29 6.56 -2.38 -0.02 1.27 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -59.73 363.86 5.53 -54.20 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.95 Total: 17.19 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 4.49 Total: -34.41 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.71 Total: -79.31 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.78 Total: -2.94 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -59.73 5.53 -54.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353416536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.147 kcal (2) G-P(sol) polarization free energy of solvation -59.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds