Wall clock time and date at job start Tue Mar 31 2020 07:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38220 * 120.01721 * 2 1 4 4 C 1.38219 * 120.02664 * 180.27175 * 3 2 1 5 5 C 1.38268 * 120.05247 * 359.44745 * 4 3 2 6 6 C 1.50701 * 119.98710 * 180.29329 * 5 4 3 7 7 N 1.46896 * 109.46810 * 77.80403 * 6 5 4 8 8 C 1.46904 * 111.00173 * 154.13620 * 7 6 5 9 9 C 1.50694 * 109.47543 * 207.33566 * 8 7 6 10 10 H 1.07997 * 119.99744 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00104 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99969 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47353 * 59.99662 * 13 11 9 15 15 H 1.48506 * 109.47085 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47549 * 299.99306 * 13 11 9 17 17 C 1.46899 * 111.00194 * 278.08966 * 7 6 5 18 18 C 1.52998 * 109.47114 * 311.29627 * 17 7 6 19 19 C 1.52999 * 109.46896 * 89.78598 * 18 17 7 20 20 C 1.52998 * 109.46850 * 209.78461 * 18 17 7 21 21 C 1.52997 * 109.47156 * 329.78681 * 18 17 7 22 22 C 1.38171 * 120.02234 * 0.27293 * 5 4 3 23 23 C 1.38447 * 120.01060 * 179.71352 * 2 1 3 24 24 F 1.35096 * 120.02408 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47072 * 270.28215 * 1 2 3 26 26 H 1.09001 * 109.46716 * 30.27726 * 1 2 3 27 27 H 1.08996 * 109.47422 * 150.28276 * 1 2 3 28 28 H 1.08005 * 119.98488 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.97524 * 179.71452 * 4 3 2 30 30 H 1.09003 * 109.46902 * 197.80262 * 6 5 4 31 31 H 1.08998 * 109.47220 * 317.80661 * 6 5 4 32 32 H 1.09008 * 109.46674 * 327.33535 * 8 7 6 33 33 H 1.09003 * 109.46943 * 87.32948 * 8 7 6 34 34 H 0.96999 * 119.99950 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.46964 * 71.29875 * 17 7 6 36 36 H 1.08996 * 109.47217 * 191.29563 * 17 7 6 37 37 H 1.09005 * 109.47079 * 53.10602 * 19 18 17 38 38 H 1.09006 * 109.47212 * 173.10490 * 19 18 17 39 39 H 1.08996 * 109.47482 * 293.10882 * 19 18 17 40 40 H 1.08995 * 109.47092 * 60.00836 * 20 18 17 41 41 H 1.09007 * 109.46943 * 180.02562 * 20 18 17 42 42 H 1.08994 * 109.47639 * 299.99811 * 20 18 17 43 43 H 1.09001 * 109.46798 * 37.25436 * 21 18 17 44 44 H 1.09000 * 109.47193 * 157.25070 * 21 18 17 45 45 H 1.08997 * 109.47148 * 277.25306 * 21 18 17 46 46 H 1.08008 * 120.01185 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1968 0.0000 4 6 3.5806 1.1970 -0.0057 5 6 4.2733 0.0004 0.0002 6 6 5.7803 0.0024 0.0007 7 7 6.2691 0.3020 1.3531 8 6 7.6087 -0.2620 1.5658 9 6 7.8072 -0.5462 3.0323 10 1 7.0173 -0.3292 3.7361 11 6 8.9976 -1.0824 3.4757 12 7 9.9596 -1.3462 2.6187 13 14 9.2438 -1.4340 5.2937 14 1 8.2193 -2.4059 5.7531 15 1 10.5980 -2.0043 5.5086 16 1 9.1097 -0.1720 6.0647 17 6 6.2606 1.7488 1.6075 18 6 6.9279 2.4761 0.4385 19 6 5.8738 2.8226 -0.6150 20 6 7.5840 3.7618 0.9457 21 6 7.9929 1.5711 -0.1840 22 6 3.5842 -1.1972 0.0060 23 6 2.1995 -1.1988 0.0060 24 9 1.5247 -2.3692 0.0124 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3634 -0.8925 -0.5094 28 1 1.6585 2.1322 0.0004 29 1 4.1201 2.1327 -0.0103 30 1 6.1450 -0.9771 -0.3088 31 1 6.1429 0.7610 -0.6930 32 1 7.7070 -1.1883 0.9996 33 1 8.3609 0.4513 1.2288 34 1 10.7972 -1.7230 2.9307 35 1 5.2316 2.0936 1.7103 36 1 6.8077 1.9593 2.5264 37 1 5.0534 3.3639 -0.1437 38 1 6.3238 3.4458 -1.3879 39 1 5.4934 1.9051 -1.0638 40 1 8.3349 3.5150 1.6961 41 1 8.0591 4.2803 0.1127 42 1 6.8253 4.4066 1.3891 43 1 7.6429 0.5389 -0.1752 44 1 8.1790 1.8829 -1.2118 45 1 8.9155 1.6469 0.3914 46 1 4.1255 -2.1319 0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353416609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:40 Heat of formation + Delta-G solvation = 32.811369 kcal Electronic energy + Delta-G solvation = -24770.271649 eV Core-core repulsion = 21383.599807 eV Total energy + Delta-G solvation = -3386.671842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.70220 -40.32494 -38.37409 -34.17515 -33.27421 -32.02276 -30.49988 -28.81745 -27.83732 -26.98881 -26.50693 -25.17447 -23.29607 -22.57559 -21.03402 -20.21713 -18.54644 -17.04999 -16.46028 -16.17858 -15.63232 -15.51041 -15.20140 -14.82414 -14.36840 -14.13150 -13.97168 -13.53705 -13.35802 -13.19874 -13.02011 -12.80546 -12.59051 -12.20419 -12.04830 -11.72365 -11.45632 -11.29441 -11.18655 -11.14148 -11.01158 -10.85531 -10.79223 -10.63844 -10.43700 -10.38143 -9.95478 -9.73168 -9.72417 -9.13291 -8.63667 -8.37663 -8.25360 -7.06334 -5.97314 -3.97234 1.37557 1.44336 3.35701 3.39699 3.43329 3.76025 4.42635 4.47224 4.80410 4.88701 4.98927 5.13162 5.16451 5.19313 5.27780 5.34155 5.37960 5.53029 5.56117 5.64084 5.69842 5.77503 5.77888 5.87690 5.90995 5.97483 6.04952 6.11273 6.13664 6.24097 6.26297 6.35124 6.41809 6.44039 6.50084 6.59058 6.66243 6.78673 6.84442 6.86084 7.14207 7.22627 7.43908 7.87166 8.13931 8.22832 8.58640 9.09453 9.65524 11.11832 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.005071 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.811987 B = 5520.430961 C = 6835.791629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C -0.097 4.097 4 C -0.146 4.146 5 C -0.030 4.030 6 C 0.051 3.949 7 N -0.523 5.523 8 C 0.161 3.839 9 C -0.500 4.500 10 H 0.060 0.940 11 C 0.055 3.945 12 N -0.902 5.902 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.068 3.932 18 C -0.102 4.102 19 C -0.164 4.164 20 C -0.135 4.135 21 C -0.169 4.169 22 C -0.137 4.137 23 C 0.091 3.909 24 F -0.145 7.145 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.023 0.977 33 H 0.039 0.961 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.647 7.726 -8.377 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.136 4.136 3 C -0.115 4.115 4 C -0.164 4.164 5 C -0.031 4.031 6 C -0.076 4.076 7 N -0.246 5.246 8 C 0.037 3.963 9 C -0.538 4.538 10 H 0.078 0.922 11 C -0.146 4.146 12 N -0.542 5.542 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.061 4.061 18 C -0.104 4.104 19 C -0.220 4.220 20 C -0.192 4.192 21 C -0.226 4.226 22 C -0.157 4.157 23 C 0.072 3.928 24 F -0.123 7.123 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.166 0.834 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.788 7.350 -8.030 16.794 hybrid contribution 0.658 -0.186 0.577 0.895 sum -12.130 7.164 -7.453 15.938 Atomic orbital electron populations 1.20660 0.90810 1.02716 1.02414 1.19823 0.96508 0.92184 1.05080 1.20851 0.94240 0.96508 0.99893 1.21991 0.94099 0.99734 1.00559 1.19896 0.96640 0.91726 0.94789 1.21958 0.89487 1.02512 0.93675 1.62216 1.29482 1.10926 1.21934 1.20627 0.83300 0.94987 0.97374 1.21200 0.99232 1.40530 0.92881 0.92221 1.24934 0.96016 0.96068 0.97566 1.69929 1.05442 1.44912 1.33920 0.86626 0.76984 0.78574 0.85592 1.20339 1.21488 1.20391 1.22324 0.99046 0.87649 0.97091 1.21202 0.95898 0.96315 0.96980 1.22796 0.98584 1.01826 0.98788 1.21851 1.00244 0.96511 1.00639 1.22944 0.99163 1.01679 0.98768 1.21084 0.91759 0.99840 1.02988 1.17524 0.90046 0.80681 1.04519 1.91442 1.80440 1.46342 1.94108 0.91227 0.91393 0.91623 0.85730 0.83401 0.90822 0.89991 0.95934 0.94350 0.93033 0.92270 0.90167 0.92376 0.93168 0.90286 0.92213 0.93465 0.93203 0.89045 0.94453 0.91390 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.83 36.01 0.35 -0.76 16 2 C -0.13 -1.77 5.89 -104.55 -0.62 -2.39 16 3 C -0.10 -1.20 9.70 -39.59 -0.38 -1.58 16 4 C -0.15 -1.99 7.68 -39.58 -0.30 -2.30 16 5 C -0.03 -0.46 5.30 -104.63 -0.55 -1.02 16 6 C 0.05 0.86 3.71 -4.98 -0.02 0.84 16 7 N -0.52 -10.52 4.46 -237.52 -1.06 -11.58 16 8 C 0.16 3.90 3.40 -4.98 -0.02 3.88 16 9 C -0.50 -13.73 8.94 -34.44 -0.31 -14.04 16 10 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -26.13 13.29 55.43 0.74 -25.40 16 13 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.07 1.20 4.84 -3.83 -0.02 1.18 16 18 C -0.10 -1.53 0.77 -154.51 -0.12 -1.65 16 19 C -0.16 -2.01 6.38 37.16 0.24 -1.78 16 20 C -0.13 -1.86 8.19 37.16 0.30 -1.56 16 21 C -0.17 -2.86 6.20 37.16 0.23 -2.63 16 22 C -0.14 -2.18 9.65 -39.52 -0.38 -2.56 16 23 C 0.09 1.38 7.24 -39.42 -0.29 1.09 16 24 F -0.14 -2.21 16.48 2.25 0.04 -2.17 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.06 0.66 7.64 -51.93 -0.40 0.27 16 28 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 29 H 0.15 1.83 2.67 -52.49 -0.14 1.69 16 30 H 0.07 1.30 7.22 -51.93 -0.38 0.93 16 31 H 0.08 1.26 2.35 -51.93 -0.12 1.14 16 32 H 0.02 0.60 7.37 -51.92 -0.38 0.21 16 33 H 0.04 0.95 3.85 -51.93 -0.20 0.75 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.06 0.96 6.11 -51.93 -0.32 0.65 16 36 H 0.08 1.60 7.36 -51.93 -0.38 1.22 16 37 H 0.06 0.64 6.41 -51.93 -0.33 0.31 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.00 3.59 -51.93 -0.19 0.81 16 40 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.69 2.69 -51.93 -0.14 1.55 16 44 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 45 H 0.07 1.30 6.75 -51.93 -0.35 0.95 16 46 H 0.13 2.08 8.02 -52.48 -0.42 1.66 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -28.94 341.19 -8.80 -37.74 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.66 Total: 3.45 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -1.98 Total: -23.83 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.32 Total: -36.98 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.94 -8.80 -37.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353416609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.552 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds