Wall clock time and date at job start Tue Mar 31 2020 07:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38220 * 120.01721 * 2 1 4 4 C 1.38219 * 120.02664 * 180.27175 * 3 2 1 5 5 C 1.38268 * 120.05247 * 359.44745 * 4 3 2 6 6 C 1.50701 * 119.98710 * 180.29329 * 5 4 3 7 7 N 1.46896 * 109.46810 * 77.80403 * 6 5 4 8 8 C 1.46904 * 111.00173 * 154.13620 * 7 6 5 9 9 C 1.50694 * 109.47543 * 207.33566 * 8 7 6 10 10 H 1.07997 * 119.99744 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00104 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99969 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47353 * 59.99662 * 13 11 9 15 15 H 1.48506 * 109.47085 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47549 * 299.99306 * 13 11 9 17 17 C 1.46899 * 111.00194 * 278.08966 * 7 6 5 18 18 C 1.52998 * 109.47114 * 311.29627 * 17 7 6 19 19 C 1.52999 * 109.46896 * 89.78598 * 18 17 7 20 20 C 1.52998 * 109.46850 * 209.78461 * 18 17 7 21 21 C 1.52997 * 109.47156 * 329.78681 * 18 17 7 22 22 C 1.38171 * 120.02234 * 0.27293 * 5 4 3 23 23 C 1.38447 * 120.01060 * 179.71352 * 2 1 3 24 24 F 1.35096 * 120.02408 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47072 * 270.28215 * 1 2 3 26 26 H 1.09001 * 109.46716 * 30.27726 * 1 2 3 27 27 H 1.08996 * 109.47422 * 150.28276 * 1 2 3 28 28 H 1.08005 * 119.98488 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.97524 * 179.71452 * 4 3 2 30 30 H 1.09003 * 109.46902 * 197.80262 * 6 5 4 31 31 H 1.08998 * 109.47220 * 317.80661 * 6 5 4 32 32 H 1.09008 * 109.46674 * 327.33535 * 8 7 6 33 33 H 1.09003 * 109.46943 * 87.32948 * 8 7 6 34 34 H 0.96999 * 119.99950 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.46964 * 71.29875 * 17 7 6 36 36 H 1.08996 * 109.47217 * 191.29563 * 17 7 6 37 37 H 1.09005 * 109.47079 * 53.10602 * 19 18 17 38 38 H 1.09006 * 109.47212 * 173.10490 * 19 18 17 39 39 H 1.08996 * 109.47482 * 293.10882 * 19 18 17 40 40 H 1.08995 * 109.47092 * 60.00836 * 20 18 17 41 41 H 1.09007 * 109.46943 * 180.02562 * 20 18 17 42 42 H 1.08994 * 109.47639 * 299.99811 * 20 18 17 43 43 H 1.09001 * 109.46798 * 37.25436 * 21 18 17 44 44 H 1.09000 * 109.47193 * 157.25070 * 21 18 17 45 45 H 1.08997 * 109.47148 * 277.25306 * 21 18 17 46 46 H 1.08008 * 120.01185 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1968 0.0000 4 6 3.5806 1.1970 -0.0057 5 6 4.2733 0.0004 0.0002 6 6 5.7803 0.0024 0.0007 7 7 6.2691 0.3020 1.3531 8 6 7.6087 -0.2620 1.5658 9 6 7.8072 -0.5462 3.0323 10 1 7.0173 -0.3292 3.7361 11 6 8.9976 -1.0824 3.4757 12 7 9.9596 -1.3462 2.6187 13 14 9.2438 -1.4340 5.2937 14 1 8.2193 -2.4059 5.7531 15 1 10.5980 -2.0043 5.5086 16 1 9.1097 -0.1720 6.0647 17 6 6.2606 1.7488 1.6075 18 6 6.9279 2.4761 0.4385 19 6 5.8738 2.8226 -0.6150 20 6 7.5840 3.7618 0.9457 21 6 7.9929 1.5711 -0.1840 22 6 3.5842 -1.1972 0.0060 23 6 2.1995 -1.1988 0.0060 24 9 1.5247 -2.3692 0.0124 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3634 -0.8925 -0.5094 28 1 1.6585 2.1322 0.0004 29 1 4.1201 2.1327 -0.0103 30 1 6.1450 -0.9771 -0.3088 31 1 6.1429 0.7610 -0.6930 32 1 7.7070 -1.1883 0.9996 33 1 8.3609 0.4513 1.2288 34 1 10.7972 -1.7230 2.9307 35 1 5.2316 2.0936 1.7103 36 1 6.8077 1.9593 2.5264 37 1 5.0534 3.3639 -0.1437 38 1 6.3238 3.4458 -1.3879 39 1 5.4934 1.9051 -1.0638 40 1 8.3349 3.5150 1.6961 41 1 8.0591 4.2803 0.1127 42 1 6.8253 4.4066 1.3891 43 1 7.6429 0.5389 -0.1752 44 1 8.1790 1.8829 -1.2118 45 1 8.9155 1.6469 0.3914 46 1 4.1255 -2.1319 0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353416609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:39 Heat of formation + Delta-G solvation = 17.411213 kcal Electronic energy + Delta-G solvation = -24770.939450 eV Core-core repulsion = 21383.599807 eV Total energy + Delta-G solvation = -3387.339643 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.86993 -41.65941 -39.53734 -35.64279 -34.79327 -33.64517 -31.61611 -30.10881 -29.34046 -28.18151 -28.01755 -26.42549 -24.90979 -23.68115 -22.49830 -21.56907 -19.80275 -18.65414 -17.91594 -17.53939 -16.89208 -16.64877 -16.61500 -16.47034 -15.87486 -15.50683 -15.36132 -14.80185 -14.49892 -14.25043 -14.17254 -14.14425 -13.75269 -13.61564 -13.07202 -13.06513 -12.90410 -12.81266 -12.62533 -12.50146 -12.43027 -12.32579 -12.13345 -12.09314 -11.97157 -11.74500 -11.47278 -11.41941 -11.11371 -10.95563 -10.47053 -9.74921 -9.40053 -8.67810 -8.10658 -6.20387 0.26369 0.33889 1.39380 1.41585 1.49251 2.41657 2.64497 3.17600 3.30809 3.56550 3.79416 3.85274 3.93535 3.96290 4.07849 4.13720 4.23369 4.36982 4.49424 4.52534 4.60563 4.71254 4.72739 4.74982 4.79590 4.85510 4.91521 4.95919 5.02029 5.09532 5.15018 5.18716 5.22922 5.26615 5.31881 5.35175 5.35557 5.47577 5.48943 5.54625 5.59987 5.69838 5.75469 6.05801 6.19578 6.53331 6.72086 6.94629 7.46841 8.95048 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.005071 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.811987 B = 5520.430961 C = 6835.791629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.131 4.131 3 C -0.089 4.089 4 C -0.142 4.142 5 C -0.047 4.047 6 C 0.057 3.943 7 N -0.537 5.537 8 C 0.177 3.823 9 C -0.516 4.516 10 H 0.049 0.951 11 C 0.005 3.995 12 N -0.932 5.932 13 Si 0.956 3.044 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.069 3.931 18 C -0.097 4.097 19 C -0.159 4.159 20 C -0.131 4.131 21 C -0.167 4.167 22 C -0.158 4.158 23 C 0.071 3.929 24 F -0.151 7.151 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.050 0.950 31 H 0.103 0.897 32 H -0.011 1.011 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.035 0.965 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.936 10.417 -8.684 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.132 4.132 3 C -0.106 4.106 4 C -0.159 4.159 5 C -0.047 4.047 6 C -0.069 4.069 7 N -0.260 5.260 8 C 0.052 3.948 9 C -0.555 4.555 10 H 0.068 0.932 11 C -0.192 4.192 12 N -0.573 5.573 13 Si 0.782 3.218 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.059 4.059 18 C -0.099 4.099 19 C -0.215 4.215 20 C -0.189 4.189 21 C -0.223 4.223 22 C -0.178 4.178 23 C 0.052 3.948 24 F -0.130 7.130 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.183 0.817 29 H 0.183 0.817 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.007 0.993 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.096 10.050 -8.343 19.962 hybrid contribution 1.321 -1.029 0.634 1.790 sum -13.775 9.021 -7.709 18.181 Atomic orbital electron populations 1.20754 0.88490 1.04016 1.03305 1.20249 0.98258 0.91502 1.03153 1.21287 0.93711 0.97722 0.97910 1.22197 0.94950 0.99221 0.99558 1.19764 0.95474 0.92688 0.96815 1.21901 0.90773 1.01907 0.92331 1.62075 1.26821 1.12704 1.24370 1.20288 0.85742 0.93602 0.95126 1.21546 0.99079 1.40461 0.94422 0.93240 1.25720 0.95772 0.95893 1.01842 1.70045 1.05833 1.45674 1.35792 0.85634 0.76975 0.78624 0.80548 1.20162 1.20840 1.19402 1.22330 1.00082 0.86457 0.97055 1.21136 0.96025 0.96028 0.96706 1.22719 0.98260 1.02235 0.98278 1.21810 1.00223 0.96157 1.00686 1.22832 0.98428 1.01220 0.99850 1.21097 0.92611 0.99655 1.04436 1.17740 0.89819 0.81456 1.05766 1.91418 1.80394 1.46903 1.94291 0.90412 0.88591 0.91904 0.81722 0.81728 0.93109 0.88006 0.99331 0.94817 0.92970 0.90116 0.93188 0.90025 0.91159 0.90721 0.94769 0.91733 0.91088 0.91165 0.92049 0.94588 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.83 71.24 0.70 -1.15 16 2 C -0.13 -3.08 5.89 -19.82 -0.12 -3.20 16 3 C -0.09 -1.83 9.70 22.26 0.22 -1.61 16 4 C -0.14 -3.45 7.68 22.27 0.17 -3.28 16 5 C -0.05 -1.44 5.30 -19.87 -0.11 -1.55 16 6 C 0.06 2.00 3.71 85.56 0.32 2.32 16 7 N -0.54 -22.35 4.46 -905.36 -4.04 -26.39 16 8 C 0.18 9.13 3.40 85.55 0.29 9.42 16 9 C -0.52 -29.61 8.94 25.60 0.23 -29.38 16 10 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 11 C 0.01 0.30 5.46 84.66 0.46 0.76 16 12 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 13 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 C 0.07 2.42 4.84 86.30 0.42 2.84 16 18 C -0.10 -2.78 0.77 -52.18 -0.04 -2.82 16 19 C -0.16 -3.31 6.38 71.98 0.46 -2.85 16 20 C -0.13 -3.38 8.19 71.98 0.59 -2.79 16 21 C -0.17 -5.70 6.20 71.98 0.45 -5.26 16 22 C -0.16 -5.19 9.65 22.31 0.22 -4.98 16 23 C 0.07 2.12 7.24 22.38 0.16 2.28 16 24 F -0.15 -4.66 16.48 44.97 0.74 -3.91 16 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 27 H 0.06 1.12 7.64 -2.39 -0.02 1.10 16 28 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.17 3.37 2.67 -2.91 -0.01 3.36 16 30 H 0.05 1.96 7.22 -2.39 -0.02 1.94 16 31 H 0.10 3.11 2.35 -2.39 -0.01 3.11 16 32 H -0.01 -0.65 7.37 -2.38 -0.02 -0.67 16 33 H 0.03 1.78 3.85 -2.39 -0.01 1.77 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.08 2.46 6.11 -2.38 -0.01 2.44 16 36 H 0.05 2.04 7.36 -2.39 -0.02 2.02 16 37 H 0.08 1.36 6.41 -2.38 -0.02 1.35 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.07 1.65 3.59 -2.39 -0.01 1.64 16 40 H 0.03 1.04 8.09 -2.39 -0.02 1.02 16 41 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.71 2.69 -2.39 -0.01 2.71 16 44 H 0.06 1.76 7.94 -2.39 -0.02 1.74 16 45 H 0.04 1.44 6.75 -2.39 -0.02 1.42 16 46 H 0.12 4.01 8.02 -2.91 -0.02 3.99 16 Total: -1.00 -65.92 341.19 4.42 -61.50 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.99 Total: 18.34 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 4.42 Total: -41.23 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -3.76 Total: -82.09 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.74 Total: -3.91 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -65.92 4.42 -61.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353416609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.915 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds