Wall clock time and date at job start Tue Mar 31 2020 07:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38221 * 120.01695 * 2 1 4 4 C 1.38221 * 120.02739 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.97259 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.46830 * 90.00183 * 5 4 3 7 7 C 1.46901 * 111.00267 * 293.95209 * 6 5 4 8 8 C 1.50698 * 109.47576 * 165.16456 * 7 6 5 9 9 H 1.08003 * 119.99659 * 355.04374 * 8 7 6 10 10 C 1.37874 * 120.00207 * 175.05547 * 8 7 6 11 11 N 1.31511 * 119.99918 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00066 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47313 * 90.00273 * 12 10 8 14 14 H 1.48505 * 109.47411 * 210.00476 * 12 10 8 15 15 H 1.48507 * 109.47151 * 330.00393 * 12 10 8 16 16 C 1.46901 * 111.00005 * 169.99869 * 6 5 4 17 17 C 1.52997 * 109.47217 * 284.46694 * 16 6 5 18 18 C 1.52997 * 109.47286 * 183.81553 * 17 16 6 19 19 C 1.53002 * 109.47439 * 174.99830 * 18 17 16 20 20 C 1.53001 * 109.47231 * 294.99826 * 18 17 16 21 21 C 1.38268 * 120.05172 * 359.97438 * 4 3 2 22 22 C 1.38172 * 120.02581 * 0.02562 * 21 4 3 23 23 C 1.38441 * 120.01292 * 179.97438 * 2 1 3 24 24 F 1.35105 * 120.02366 * 359.74037 * 23 2 1 25 25 H 1.09003 * 109.46993 * 270.02862 * 1 2 3 26 26 H 1.08998 * 109.47249 * 30.02116 * 1 2 3 27 27 H 1.08992 * 109.47566 * 150.02460 * 1 2 3 28 28 H 1.08001 * 119.98300 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47099 * 209.99957 * 5 4 3 30 30 H 1.09003 * 109.47308 * 330.00104 * 5 4 3 31 31 H 1.09000 * 109.46872 * 285.16158 * 7 6 5 32 32 H 1.08996 * 109.47129 * 45.15599 * 7 6 5 33 33 H 0.97004 * 119.99989 * 179.97438 * 11 10 8 34 34 H 1.09006 * 109.46922 * 44.46351 * 16 6 5 35 35 H 1.09002 * 109.47249 * 164.46569 * 16 6 5 36 36 H 1.09003 * 109.46845 * 303.81133 * 17 16 6 37 37 H 1.08996 * 109.47395 * 63.81496 * 17 16 6 38 38 H 1.09001 * 109.47136 * 54.99719 * 18 17 16 39 39 H 1.09001 * 109.47047 * 59.99835 * 19 18 17 40 40 H 1.08999 * 109.47182 * 180.02562 * 19 18 17 41 41 H 1.08998 * 109.46758 * 299.99896 * 19 18 17 42 42 H 1.08996 * 109.47453 * 180.02562 * 20 18 17 43 43 H 1.09001 * 109.46974 * 299.99993 * 20 18 17 44 44 H 1.08999 * 109.46965 * 59.99353 * 20 18 17 45 45 H 1.07998 * 119.98481 * 180.02562 * 21 4 3 46 46 H 1.07994 * 120.01513 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3333 2.5027 -0.0011 6 7 4.5784 2.9271 1.3837 7 6 3.3183 3.2505 2.0661 8 6 3.5565 3.3248 3.5523 9 1 4.5251 3.0713 3.9572 10 6 2.5379 3.7161 4.3950 11 7 2.7457 3.7805 5.6920 12 14 0.8627 4.1549 3.6946 13 1 0.0146 2.9372 3.6400 14 1 0.2143 5.1712 4.5617 15 1 1.0275 4.7052 2.3251 16 6 5.5083 4.0634 1.4293 17 6 6.9318 3.5683 1.1661 18 6 7.9118 4.7347 1.3074 19 6 9.3447 4.2168 1.1677 20 6 7.6346 5.7690 0.2146 21 6 4.2733 0.0004 -0.0005 22 6 3.5843 -1.1973 -0.0005 23 6 2.1995 -1.1988 0.0005 24 9 1.5247 -2.3692 0.0064 25 1 -0.3633 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6584 2.1321 -0.0004 29 1 5.2856 2.3729 -0.5153 30 1 3.7435 3.2619 -0.5149 31 1 2.9480 4.2114 1.7090 32 1 2.5813 2.4758 1.8545 33 1 2.0292 4.0561 6.2849 34 1 5.2301 4.7914 0.6671 35 1 5.4624 4.5313 2.4127 36 1 7.1854 2.7913 1.8874 37 1 6.9943 3.1615 0.1568 38 1 7.7867 5.1978 2.2862 39 1 9.4698 3.7536 0.1889 40 1 10.0429 5.0477 1.2688 41 1 9.5422 3.4799 1.9462 42 1 8.3330 6.5997 0.3150 43 1 7.7597 5.3059 -0.7642 44 1 6.6138 6.1379 0.3141 45 1 5.3533 0.0018 -0.0005 46 1 4.1254 -2.1318 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353417608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:31 Heat of formation + Delta-G solvation = -41.477578 kcal Electronic energy + Delta-G solvation = -23938.755132 eV Core-core repulsion = 20548.861880 eV Total energy + Delta-G solvation = -3389.893252 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.69474 -39.30173 -37.41887 -35.46434 -32.90483 -32.39118 -31.05058 -29.07026 -27.55798 -27.02337 -26.70140 -24.64693 -22.62733 -22.11641 -20.96385 -19.77421 -19.43442 -17.33025 -16.90195 -16.31574 -15.52162 -15.38447 -15.02386 -14.76594 -14.52052 -13.95106 -13.93449 -13.38333 -13.29785 -13.23165 -13.09058 -12.93729 -12.75546 -12.42604 -12.30637 -12.11872 -12.06697 -11.69496 -11.55303 -11.36072 -11.05412 -10.86495 -10.72945 -10.70256 -10.51181 -10.40426 -10.12080 -9.94826 -9.85448 -9.29073 -8.67704 -8.52337 -8.24414 -7.37945 -6.04694 -4.00773 1.38399 1.46492 3.26335 3.33337 3.34009 3.75786 4.41049 4.47686 4.74068 4.85689 4.92880 5.05796 5.10688 5.18103 5.26964 5.28337 5.38702 5.44766 5.61271 5.66890 5.69512 5.71232 5.76623 5.85081 5.90948 5.93984 5.96333 6.04484 6.06664 6.14447 6.21836 6.24772 6.27826 6.38780 6.41124 6.50872 6.51438 6.70172 6.72677 6.82208 6.90893 6.98344 7.14107 7.62997 7.88923 8.03435 8.66760 9.05914 9.57552 11.08647 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.005899 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.920137 B = 4745.810121 C = 6844.633142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.066 4.066 5 C 0.089 3.911 6 N -0.521 5.521 7 C 0.154 3.846 8 C -0.503 4.503 9 H 0.081 0.919 10 C 0.069 3.931 11 N -0.900 5.900 12 Si 0.868 3.132 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.062 3.938 17 C -0.106 4.106 18 C -0.098 4.098 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.076 4.076 22 C -0.152 4.152 23 C 0.086 3.914 24 F -0.145 7.145 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.032 0.968 31 H -0.012 1.012 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.022 0.978 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.131 0.869 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -3.268 -14.426 15.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.067 4.067 5 C -0.039 4.039 6 N -0.245 5.245 7 C 0.028 3.972 8 C -0.541 4.541 9 H 0.099 0.901 10 C -0.133 4.133 11 N -0.540 5.540 12 Si 0.695 3.305 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.066 4.066 17 C -0.144 4.144 18 C -0.117 4.117 19 C -0.201 4.201 20 C -0.204 4.204 21 C -0.095 4.095 22 C -0.171 4.171 23 C 0.066 3.934 24 F -0.124 7.124 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.428 -3.643 -13.998 15.127 hybrid contribution -1.501 0.686 -0.498 1.724 sum 2.927 -2.957 -14.496 15.082 Atomic orbital electron populations 1.20708 0.90584 1.02756 1.02930 1.19835 0.96764 0.91966 1.03560 1.20852 0.93808 0.96897 0.98454 1.19850 0.93218 0.95504 0.98084 1.21072 0.98297 0.92328 0.92214 1.61968 1.14944 1.36407 1.11160 1.20337 0.87184 0.94105 0.95529 1.21014 1.00104 1.44407 0.88625 0.90117 1.24878 0.98276 0.95379 0.94727 1.69888 1.33010 1.48540 1.02514 0.86973 0.85349 0.78756 0.79426 1.20082 1.21208 1.19235 1.22097 0.91225 0.91347 1.01958 1.21619 0.94237 0.97416 1.01160 1.21113 0.94772 0.96335 0.99522 1.21817 0.96195 1.00673 1.01446 1.21879 1.01576 0.98528 0.98440 1.20794 1.00049 0.90694 0.97956 1.21030 0.92062 0.99610 1.04379 1.17482 0.90091 0.80636 1.05154 1.91438 1.80558 1.46201 1.94182 0.90757 0.91203 0.91486 0.85523 0.90571 0.94993 0.99420 0.95112 0.92738 0.96035 0.89261 0.91177 0.93027 0.90972 0.93117 0.93224 0.92693 0.93323 0.93184 0.92400 0.85151 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.83 36.00 0.35 -1.15 16 2 C -0.12 -1.88 5.89 -104.55 -0.62 -2.50 16 3 C -0.08 -1.33 7.50 -39.59 -0.30 -1.63 16 4 C -0.07 -1.07 4.93 -104.62 -0.52 -1.58 16 5 C 0.09 1.43 4.95 -4.98 -0.02 1.41 16 6 N -0.52 -10.29 4.38 -237.51 -1.04 -11.33 16 7 C 0.15 3.63 3.65 -4.98 -0.02 3.61 16 8 C -0.50 -14.07 8.81 -34.44 -0.30 -14.37 16 9 H 0.08 2.48 8.01 -52.48 -0.42 2.06 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 12 Si 0.87 21.30 27.57 -169.99 -4.69 16.61 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.26 6.40 56.52 0.36 -5.90 16 16 C 0.06 1.10 4.49 -3.83 -0.02 1.08 16 17 C -0.11 -1.56 4.73 -26.73 -0.13 -1.68 16 18 C -0.10 -1.26 2.92 -90.62 -0.26 -1.52 16 19 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 20 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 21 C -0.08 -1.12 9.70 -39.59 -0.38 -1.51 16 22 C -0.15 -2.18 10.03 -39.52 -0.40 -2.58 16 23 C 0.09 1.33 7.24 -39.42 -0.29 1.04 16 24 F -0.15 -2.22 16.48 2.25 0.04 -2.18 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 27 H 0.07 0.80 7.64 -51.93 -0.40 0.41 16 28 H 0.13 2.02 7.76 -52.49 -0.41 1.62 16 29 H 0.08 1.06 6.62 -51.93 -0.34 0.72 16 30 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 31 H -0.01 -0.28 6.77 -51.93 -0.35 -0.64 16 32 H 0.03 0.73 4.86 -51.93 -0.25 0.48 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.02 0.36 6.61 -51.93 -0.34 0.02 16 35 H 0.09 1.86 7.04 -51.93 -0.37 1.49 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.69 6.90 -51.93 -0.36 0.33 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.72 6.65 -51.93 -0.35 0.37 16 45 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -30.08 365.86 -9.55 -39.63 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.83 Total: 0.58 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.32 Total: -22.11 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.27 Total: -38.04 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.69 Total: 16.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.08 -9.55 -39.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.849 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds