Wall clock time and date at job start Tue Mar 31 2020 07:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38221 * 120.01695 * 2 1 4 4 C 1.38221 * 120.02739 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.97259 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.46830 * 90.00183 * 5 4 3 7 7 C 1.46901 * 111.00267 * 293.95209 * 6 5 4 8 8 C 1.50698 * 109.47576 * 165.16456 * 7 6 5 9 9 H 1.08003 * 119.99659 * 355.04374 * 8 7 6 10 10 C 1.37874 * 120.00207 * 175.05547 * 8 7 6 11 11 N 1.31511 * 119.99918 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00066 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47313 * 90.00273 * 12 10 8 14 14 H 1.48505 * 109.47411 * 210.00476 * 12 10 8 15 15 H 1.48507 * 109.47151 * 330.00393 * 12 10 8 16 16 C 1.46901 * 111.00005 * 169.99869 * 6 5 4 17 17 C 1.52997 * 109.47217 * 284.46694 * 16 6 5 18 18 C 1.52997 * 109.47286 * 183.81553 * 17 16 6 19 19 C 1.53002 * 109.47439 * 174.99830 * 18 17 16 20 20 C 1.53001 * 109.47231 * 294.99826 * 18 17 16 21 21 C 1.38268 * 120.05172 * 359.97438 * 4 3 2 22 22 C 1.38172 * 120.02581 * 0.02562 * 21 4 3 23 23 C 1.38441 * 120.01292 * 179.97438 * 2 1 3 24 24 F 1.35105 * 120.02366 * 359.74037 * 23 2 1 25 25 H 1.09003 * 109.46993 * 270.02862 * 1 2 3 26 26 H 1.08998 * 109.47249 * 30.02116 * 1 2 3 27 27 H 1.08992 * 109.47566 * 150.02460 * 1 2 3 28 28 H 1.08001 * 119.98300 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47099 * 209.99957 * 5 4 3 30 30 H 1.09003 * 109.47308 * 330.00104 * 5 4 3 31 31 H 1.09000 * 109.46872 * 285.16158 * 7 6 5 32 32 H 1.08996 * 109.47129 * 45.15599 * 7 6 5 33 33 H 0.97004 * 119.99989 * 179.97438 * 11 10 8 34 34 H 1.09006 * 109.46922 * 44.46351 * 16 6 5 35 35 H 1.09002 * 109.47249 * 164.46569 * 16 6 5 36 36 H 1.09003 * 109.46845 * 303.81133 * 17 16 6 37 37 H 1.08996 * 109.47395 * 63.81496 * 17 16 6 38 38 H 1.09001 * 109.47136 * 54.99719 * 18 17 16 39 39 H 1.09001 * 109.47047 * 59.99835 * 19 18 17 40 40 H 1.08999 * 109.47182 * 180.02562 * 19 18 17 41 41 H 1.08998 * 109.46758 * 299.99896 * 19 18 17 42 42 H 1.08996 * 109.47453 * 180.02562 * 20 18 17 43 43 H 1.09001 * 109.46974 * 299.99993 * 20 18 17 44 44 H 1.08999 * 109.46965 * 59.99353 * 20 18 17 45 45 H 1.07998 * 119.98481 * 180.02562 * 21 4 3 46 46 H 1.07994 * 120.01513 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3333 2.5027 -0.0011 6 7 4.5784 2.9271 1.3837 7 6 3.3183 3.2505 2.0661 8 6 3.5565 3.3248 3.5523 9 1 4.5251 3.0713 3.9572 10 6 2.5379 3.7161 4.3950 11 7 2.7457 3.7805 5.6920 12 14 0.8627 4.1549 3.6946 13 1 0.0146 2.9372 3.6400 14 1 0.2143 5.1712 4.5617 15 1 1.0275 4.7052 2.3251 16 6 5.5083 4.0634 1.4293 17 6 6.9318 3.5683 1.1661 18 6 7.9118 4.7347 1.3074 19 6 9.3447 4.2168 1.1677 20 6 7.6346 5.7690 0.2146 21 6 4.2733 0.0004 -0.0005 22 6 3.5843 -1.1973 -0.0005 23 6 2.1995 -1.1988 0.0005 24 9 1.5247 -2.3692 0.0064 25 1 -0.3633 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6584 2.1321 -0.0004 29 1 5.2856 2.3729 -0.5153 30 1 3.7435 3.2619 -0.5149 31 1 2.9480 4.2114 1.7090 32 1 2.5813 2.4758 1.8545 33 1 2.0292 4.0561 6.2849 34 1 5.2301 4.7914 0.6671 35 1 5.4624 4.5313 2.4127 36 1 7.1854 2.7913 1.8874 37 1 6.9943 3.1615 0.1568 38 1 7.7867 5.1978 2.2862 39 1 9.4698 3.7536 0.1889 40 1 10.0429 5.0477 1.2688 41 1 9.5422 3.4799 1.9462 42 1 8.3330 6.5997 0.3150 43 1 7.7597 5.3059 -0.7642 44 1 6.6138 6.1379 0.3141 45 1 5.3533 0.0018 -0.0005 46 1 4.1254 -2.1318 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353417608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:31 Heat of formation + Delta-G solvation = -57.165241 kcal Electronic energy + Delta-G solvation = -23939.435400 eV Core-core repulsion = 20548.861880 eV Total energy + Delta-G solvation = -3390.573521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.87411 -40.52944 -38.73817 -36.70377 -34.71183 -33.84006 -32.28910 -30.73177 -28.94734 -27.93913 -27.90050 -26.08776 -24.15126 -23.39960 -22.33966 -21.09816 -20.64703 -19.00221 -18.49145 -17.54334 -16.77852 -16.66925 -16.53879 -16.15449 -15.92840 -15.48457 -15.12246 -14.66673 -14.53963 -14.42493 -14.34773 -14.23176 -14.06816 -13.90228 -13.72202 -13.24416 -13.16529 -12.97964 -12.75909 -12.68510 -12.42893 -12.34711 -12.13159 -11.93489 -11.90099 -11.82019 -11.53344 -11.42167 -11.28064 -11.22572 -10.76174 -9.80859 -9.45040 -8.93340 -8.27083 -6.28183 0.18601 0.30911 1.31401 1.32596 1.42006 2.33155 2.55732 3.06896 3.31788 3.36426 3.72909 3.80820 3.90608 4.03523 4.14400 4.17175 4.26354 4.29946 4.39401 4.55023 4.61257 4.65869 4.67664 4.70162 4.83078 4.85934 4.87677 4.92146 4.95931 4.99500 5.07282 5.08430 5.11393 5.17114 5.25318 5.26556 5.30031 5.35659 5.43540 5.57671 5.59023 5.60007 5.64385 5.98728 6.03603 6.44098 6.68400 6.78469 7.34503 8.89866 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.005899 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.920137 B = 4745.810121 C = 6844.633142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.131 4.131 3 C -0.098 4.098 4 C -0.082 4.082 5 C 0.092 3.908 6 N -0.536 5.536 7 C 0.168 3.832 8 C -0.505 4.505 9 H 0.035 0.965 10 C 0.008 3.992 11 N -0.949 5.949 12 Si 0.935 3.065 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.247 1.247 16 C 0.066 3.934 17 C -0.095 4.095 18 C -0.099 4.099 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.079 4.079 22 C -0.150 4.150 23 C 0.071 3.929 24 F -0.146 7.146 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.039 0.961 31 H -0.015 1.015 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.151 0.849 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -3.493 -17.141 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.132 4.132 3 C -0.117 4.117 4 C -0.083 4.083 5 C -0.035 4.035 6 N -0.260 5.260 7 C 0.041 3.959 8 C -0.544 4.544 9 H 0.053 0.947 10 C -0.189 4.189 11 N -0.591 5.591 12 Si 0.759 3.241 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.170 1.170 16 C -0.062 4.062 17 C -0.133 4.133 18 C -0.118 4.118 19 C -0.197 4.197 20 C -0.200 4.200 21 C -0.097 4.097 22 C -0.169 4.169 23 C 0.052 3.948 24 F -0.125 7.125 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.003 0.997 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.169 0.831 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.488 -3.874 -16.741 17.760 hybrid contribution -1.413 0.702 0.371 1.621 sum 3.075 -3.171 -16.370 16.956 Atomic orbital electron populations 1.20765 0.89249 1.04127 1.02892 1.20105 0.98005 0.91861 1.03188 1.20973 0.94165 0.97211 0.99307 1.19995 0.93400 0.96003 0.98872 1.21142 0.99950 0.92458 0.89938 1.61868 1.13354 1.37039 1.13702 1.20037 0.89160 0.93922 0.92821 1.21251 0.98180 1.43537 0.91434 0.94677 1.25789 1.02789 0.95421 0.94921 1.70053 1.34542 1.50268 1.04204 0.85890 0.79828 0.78849 0.79570 1.19074 1.20905 1.17023 1.22046 0.92907 0.91223 1.00014 1.21521 0.92407 0.97613 1.01740 1.21101 0.95610 0.95970 0.99125 1.21772 0.94831 1.01025 1.02038 1.21842 1.01159 0.98539 0.98491 1.21059 1.01141 0.90281 0.97244 1.21338 0.91795 1.00643 1.03095 1.17719 0.90767 0.80682 1.05651 1.91433 1.80653 1.46157 1.94236 0.91365 0.89678 0.90391 0.85538 0.87878 0.94282 0.99704 0.94721 0.92654 0.94617 0.93501 0.93080 0.90712 0.93096 0.91686 0.92000 0.93310 0.92076 0.91656 0.93634 0.83119 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.84 9.83 71.24 0.70 -2.14 16 2 C -0.13 -3.90 5.89 -19.82 -0.12 -4.01 16 3 C -0.10 -3.06 7.50 22.26 0.17 -2.89 16 4 C -0.08 -2.51 4.93 -19.86 -0.10 -2.60 16 5 C 0.09 2.78 4.95 85.56 0.42 3.20 16 6 N -0.54 -20.93 4.38 -905.36 -3.97 -24.89 16 7 C 0.17 7.86 3.65 85.56 0.31 8.18 16 8 C -0.51 -29.28 8.81 25.60 0.23 -29.05 16 9 H 0.03 2.29 8.01 -2.91 -0.02 2.27 16 10 C 0.01 0.45 5.47 84.65 0.46 0.91 16 11 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 12 Si 0.93 44.10 27.57 68.60 1.89 45.99 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 15 H -0.25 -10.70 6.40 99.48 0.64 -10.07 16 16 C 0.07 2.35 4.49 86.30 0.39 2.74 16 17 C -0.09 -2.69 4.73 30.59 0.14 -2.55 16 18 C -0.10 -2.44 2.92 -10.79 -0.03 -2.47 16 19 C -0.14 -2.79 9.19 71.98 0.66 -2.13 16 20 C -0.14 -3.02 8.95 71.98 0.64 -2.38 16 21 C -0.08 -2.14 9.70 22.26 0.22 -1.92 16 22 C -0.15 -3.98 10.03 22.31 0.22 -3.75 16 23 C 0.07 2.09 7.24 22.38 0.16 2.25 16 24 F -0.15 -4.25 16.48 44.97 0.74 -3.50 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 27 H 0.08 1.73 7.64 -2.39 -0.02 1.71 16 28 H 0.13 3.85 7.76 -2.91 -0.02 3.83 16 29 H 0.10 2.53 6.62 -2.38 -0.02 2.52 16 30 H 0.04 1.14 8.06 -2.39 -0.02 1.12 16 31 H -0.01 -0.69 6.77 -2.39 -0.02 -0.71 16 32 H 0.03 1.62 4.86 -2.39 -0.01 1.61 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.04 1.17 6.61 -2.38 -0.02 1.15 16 35 H 0.05 2.05 7.04 -2.39 -0.02 2.04 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.78 6.90 -2.39 -0.02 1.76 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.04 1.06 6.65 -2.39 -0.02 1.05 16 45 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 46 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -67.07 365.86 4.32 -62.76 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.87 Total: 17.99 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 4.48 Total: -38.61 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -3.67 Total: -84.62 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.74 Total: -3.50 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.89 Total: 45.99 kcal Total: -67.07 4.32 -62.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.591 kcal (2) G-P(sol) polarization free energy of solvation -67.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds