Wall clock time and date at job start Tue Mar 31 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.97688 * 2 1 4 4 C 1.38186 * 120.02439 * 180.32500 * 3 2 1 5 5 C 1.38475 * 119.97190 * 359.41682 * 4 3 2 6 6 F 1.35099 * 120.02641 * 180.25720 * 5 4 3 7 7 C 1.38443 * 119.95148 * 0.28314 * 5 4 3 8 8 C 1.50700 * 120.01389 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.47216 * 275.27040 * 8 7 5 10 10 C 1.46897 * 110.99949 * 199.88713 * 9 8 7 11 11 C 1.50707 * 109.46839 * 171.50495 * 10 9 8 12 12 H 1.07993 * 119.99960 * 4.09748 * 11 10 9 13 13 C 1.37874 * 119.99635 * 184.10282 * 11 10 9 14 14 N 1.31520 * 120.00371 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47401 * 59.99818 * 15 13 11 17 17 H 1.48501 * 109.47088 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47130 * 299.99714 * 15 13 11 19 19 C 1.46908 * 110.99800 * 75.93584 * 9 8 7 20 20 C 1.52994 * 109.47074 * 80.74026 * 19 9 8 21 21 C 1.53003 * 109.47079 * 78.12162 * 20 19 9 22 22 C 1.52997 * 109.47253 * 198.12158 * 20 19 9 23 23 C 1.53003 * 109.47354 * 318.12274 * 20 19 9 24 24 C 1.38222 * 119.97236 * 359.97438 * 7 5 4 25 25 H 1.09001 * 109.47010 * 270.27785 * 1 2 3 26 26 H 1.09000 * 109.47417 * 30.27509 * 1 2 3 27 27 H 1.08997 * 109.47432 * 150.28051 * 1 2 3 28 28 H 1.07997 * 119.98879 * 0.04249 * 3 2 1 29 29 H 1.08001 * 120.01277 * 179.69858 * 4 3 2 30 30 H 1.09001 * 109.47252 * 35.27555 * 8 7 5 31 31 H 1.09004 * 109.47238 * 155.27558 * 8 7 5 32 32 H 1.09003 * 109.46921 * 291.50133 * 10 9 8 33 33 H 1.08994 * 109.47277 * 51.50328 * 10 9 8 34 34 H 0.96998 * 120.00120 * 179.97438 * 14 13 11 35 35 H 1.08989 * 109.46920 * 200.74246 * 19 9 8 36 36 H 1.09001 * 109.46809 * 320.74189 * 19 9 8 37 37 H 1.08993 * 109.46851 * 26.39082 * 21 20 19 38 38 H 1.09003 * 109.47112 * 146.39124 * 21 20 19 39 39 H 1.08998 * 109.47354 * 266.38784 * 21 20 19 40 40 H 1.08997 * 109.47504 * 59.99832 * 22 20 19 41 41 H 1.09008 * 109.47530 * 180.02562 * 22 20 19 42 42 H 1.09008 * 109.47249 * 300.00149 * 22 20 19 43 43 H 1.08999 * 109.46998 * 60.62660 * 23 20 19 44 44 H 1.09005 * 109.47282 * 180.62486 * 23 20 19 45 45 H 1.09004 * 109.46828 * 300.62496 * 23 20 19 46 46 H 1.08004 * 119.98505 * 179.97438 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5797 1.1988 -0.0068 5 6 4.2725 -0.0001 -0.0014 6 9 5.6235 -0.0003 -0.0028 7 6 3.5797 -1.1987 0.0049 8 6 4.3323 -2.5044 0.0114 9 7 4.6867 -2.8721 -1.3660 10 6 4.9843 -4.3070 -1.4677 11 6 5.1380 -4.6865 -2.9181 12 1 5.0916 -3.9257 -3.6832 13 6 5.3376 -6.0051 -3.2682 14 7 5.3945 -6.9315 -2.3365 15 14 5.5274 -6.4756 -5.0660 16 1 6.7006 -5.7700 -5.6412 17 1 5.7303 -7.9426 -5.1749 18 1 4.3026 -6.0882 -5.8110 19 6 5.8134 -2.0649 -1.8530 20 6 7.1250 -2.6482 -1.3236 21 6 7.5062 -3.8785 -2.1494 22 6 8.2316 -1.5973 -1.4336 23 6 6.9490 -3.0519 0.1417 24 6 2.1975 -1.1974 0.0063 25 1 -0.3633 0.0050 1.0277 26 1 -0.3634 0.8875 -0.5181 27 1 -0.3634 -0.8924 -0.5094 28 1 1.6573 2.1326 0.0007 29 1 4.1191 2.1345 -0.0117 30 1 5.2407 -2.3972 0.6041 31 1 3.7051 -3.2831 0.4453 32 1 5.9101 -4.5247 -0.9352 33 1 4.1683 -4.8795 -1.0268 34 1 5.5346 -7.8592 -2.5828 35 1 5.8243 -2.0766 -2.9428 36 1 5.7040 -1.0389 -1.5016 37 1 7.0752 -3.7943 -3.1469 38 1 8.5916 -3.9423 -2.2266 39 1 7.1233 -4.7756 -1.6627 40 1 7.9601 -0.7208 -0.8454 41 1 9.1662 -2.0130 -1.0568 42 1 8.3571 -1.3097 -2.4775 43 1 6.1683 -3.8087 0.2187 44 1 7.8867 -3.4572 0.5221 45 1 6.6666 -2.1775 0.7281 46 1 1.6568 -2.1324 0.0108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353421074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:21 Heat of formation + Delta-G solvation = 20.084351 kcal Electronic energy + Delta-G solvation = -25367.053147 eV Core-core repulsion = 21979.829420 eV Total energy + Delta-G solvation = -3387.223727 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.77810 -39.58570 -38.63365 -33.93124 -32.93722 -32.10622 -31.04182 -28.04607 -27.58586 -26.50173 -25.90003 -25.31330 -23.95203 -22.20748 -20.97380 -19.81509 -18.19221 -17.35691 -16.51679 -16.23057 -15.89956 -15.13286 -14.78872 -14.60769 -14.08035 -13.82528 -13.77971 -13.65385 -13.43282 -13.26066 -12.93380 -12.80182 -12.13374 -12.04849 -11.74573 -11.63725 -11.38895 -11.22995 -11.01487 -10.93379 -10.85894 -10.71771 -10.63906 -10.54100 -10.36380 -10.08973 -9.67018 -9.58811 -9.20040 -9.07486 -8.71241 -8.32536 -8.24738 -6.86589 -5.97161 -3.90334 1.32205 1.41841 3.35605 3.40108 3.43266 3.71594 4.47634 4.48937 4.82242 4.88632 4.98986 5.23057 5.28801 5.36755 5.40936 5.55569 5.57231 5.59869 5.65276 5.76841 5.78952 5.91696 6.03152 6.12634 6.14031 6.25218 6.29013 6.33468 6.34897 6.42898 6.45818 6.56579 6.60287 6.70748 6.74194 6.90666 6.93357 7.08512 7.10177 7.24261 7.36939 7.51035 7.85655 7.89411 8.17142 8.31557 8.63161 9.08066 9.65508 11.13346 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.005460 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.531264 B = 5127.021407 C = 6173.619351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.106 4.106 4 C -0.153 4.153 5 C 0.091 3.909 6 F -0.133 7.133 7 C -0.081 4.081 8 C 0.051 3.949 9 N -0.524 5.524 10 C 0.158 3.842 11 C -0.484 4.484 12 H 0.059 0.941 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.059 3.941 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.164 4.164 24 C -0.078 4.078 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.013 0.987 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 13.985 6.734 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.125 4.125 4 C -0.172 4.172 5 C 0.071 3.929 6 F -0.111 7.111 7 C -0.083 4.083 8 C -0.077 4.077 9 N -0.247 5.247 10 C 0.035 3.965 11 C -0.523 4.523 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.540 5.540 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 C -0.069 4.069 20 C -0.092 4.092 21 C -0.198 4.198 22 C -0.191 4.191 23 C -0.220 4.220 24 C -0.097 4.097 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.032 0.968 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.204 13.851 6.443 15.844 hybrid contribution 1.077 -0.497 -0.624 1.341 sum -3.127 13.354 5.819 14.899 Atomic orbital electron populations 1.20752 0.91077 1.02859 1.02090 1.19932 0.96241 0.93028 1.00773 1.20741 0.92987 0.97694 1.01028 1.21018 0.94987 0.96713 1.04489 1.17573 0.76835 0.94194 1.04262 1.91388 1.29105 1.97150 1.93458 1.20158 0.94346 0.94656 0.99095 1.21817 0.99515 0.92383 0.93964 1.62368 1.37568 1.08236 1.16510 1.20703 0.97014 0.80911 0.97914 1.20958 1.46972 0.92298 0.92088 0.92303 1.24840 0.96342 0.96470 0.96886 1.69918 1.50892 1.01007 1.32186 0.86721 0.78606 0.77189 0.85912 1.20338 1.21511 1.20422 1.22498 0.87619 0.96690 1.00127 1.21041 0.96281 0.96543 0.95299 1.22598 0.96938 0.97934 1.02366 1.21849 0.98015 0.98437 1.00802 1.22725 1.02035 1.00968 0.96278 1.20868 0.92672 0.97891 0.98250 0.91371 0.91730 0.91299 0.85729 0.85357 0.90694 0.90670 0.94434 0.95842 0.93049 0.91516 0.91410 0.90409 0.96843 0.89158 0.93496 0.93685 0.93292 0.89751 0.93923 0.93066 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.00 0.36 -0.67 16 2 C -0.10 -1.22 5.88 -104.62 -0.62 -1.83 16 3 C -0.11 -1.23 9.70 -39.59 -0.38 -1.61 16 4 C -0.15 -1.97 10.03 -39.51 -0.40 -2.36 16 5 C 0.09 1.40 6.45 -39.42 -0.25 1.14 16 6 F -0.13 -2.14 13.04 2.25 0.03 -2.11 16 7 C -0.08 -1.31 5.28 -104.55 -0.55 -1.86 16 8 C 0.05 0.91 4.17 -4.98 -0.02 0.89 16 9 N -0.52 -11.03 4.63 -237.51 -1.10 -12.13 16 10 C 0.16 3.85 3.64 -4.97 -0.02 3.83 16 11 C -0.48 -12.80 5.20 -34.44 -0.18 -12.98 16 12 H 0.06 1.59 6.73 -52.49 -0.35 1.24 16 13 C 0.05 1.49 5.15 -17.82 -0.09 1.40 16 14 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 15 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.06 1.17 4.53 -3.82 -0.02 1.16 16 20 C -0.09 -1.70 0.77 -154.51 -0.12 -1.82 16 21 C -0.14 -3.06 7.15 37.16 0.27 -2.79 16 22 C -0.13 -2.19 8.20 37.16 0.30 -1.89 16 23 C -0.16 -2.98 6.39 37.16 0.24 -2.74 16 24 C -0.08 -1.13 9.33 -39.59 -0.37 -1.50 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.08 1.33 3.13 -51.93 -0.16 1.17 16 31 H 0.07 1.35 7.66 -51.93 -0.40 0.95 16 32 H 0.04 0.94 2.22 -51.93 -0.12 0.82 16 33 H 0.02 0.63 7.86 -51.93 -0.41 0.22 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.07 1.44 6.76 -51.94 -0.35 1.09 16 36 H 0.07 1.27 3.67 -51.93 -0.19 1.08 16 37 H 0.08 1.82 5.36 -51.93 -0.28 1.54 16 38 H 0.01 0.26 7.77 -51.93 -0.40 -0.15 16 39 H 0.09 2.21 4.76 -51.93 -0.25 1.96 16 40 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 41 H 0.04 0.70 8.12 -51.92 -0.42 0.28 16 42 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 43 H 0.08 1.68 3.72 -51.93 -0.19 1.49 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.87 5.81 -51.93 -0.30 0.57 16 46 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -28.02 338.11 -8.85 -36.87 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.74 Total: 4.39 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -1.85 Total: -23.64 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.36 Total: -36.95 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.03 Total: -2.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.02 -8.85 -36.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353421074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.950 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds