Wall clock time and date at job start Tue Mar 31 2020 07:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.97688 * 2 1 4 4 C 1.38186 * 120.02439 * 180.32500 * 3 2 1 5 5 C 1.38475 * 119.97190 * 359.41682 * 4 3 2 6 6 F 1.35099 * 120.02641 * 180.25720 * 5 4 3 7 7 C 1.38443 * 119.95148 * 0.28314 * 5 4 3 8 8 C 1.50700 * 120.01389 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.47216 * 275.27040 * 8 7 5 10 10 C 1.46897 * 110.99949 * 199.88713 * 9 8 7 11 11 C 1.50707 * 109.46839 * 171.50495 * 10 9 8 12 12 H 1.07993 * 119.99960 * 4.09748 * 11 10 9 13 13 C 1.37874 * 119.99635 * 184.10282 * 11 10 9 14 14 N 1.31520 * 120.00371 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47401 * 59.99818 * 15 13 11 17 17 H 1.48501 * 109.47088 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47130 * 299.99714 * 15 13 11 19 19 C 1.46908 * 110.99800 * 75.93584 * 9 8 7 20 20 C 1.52994 * 109.47074 * 80.74026 * 19 9 8 21 21 C 1.53003 * 109.47079 * 78.12162 * 20 19 9 22 22 C 1.52997 * 109.47253 * 198.12158 * 20 19 9 23 23 C 1.53003 * 109.47354 * 318.12274 * 20 19 9 24 24 C 1.38222 * 119.97236 * 359.97438 * 7 5 4 25 25 H 1.09001 * 109.47010 * 270.27785 * 1 2 3 26 26 H 1.09000 * 109.47417 * 30.27509 * 1 2 3 27 27 H 1.08997 * 109.47432 * 150.28051 * 1 2 3 28 28 H 1.07997 * 119.98879 * 0.04249 * 3 2 1 29 29 H 1.08001 * 120.01277 * 179.69858 * 4 3 2 30 30 H 1.09001 * 109.47252 * 35.27555 * 8 7 5 31 31 H 1.09004 * 109.47238 * 155.27558 * 8 7 5 32 32 H 1.09003 * 109.46921 * 291.50133 * 10 9 8 33 33 H 1.08994 * 109.47277 * 51.50328 * 10 9 8 34 34 H 0.96998 * 120.00120 * 179.97438 * 14 13 11 35 35 H 1.08989 * 109.46920 * 200.74246 * 19 9 8 36 36 H 1.09001 * 109.46809 * 320.74189 * 19 9 8 37 37 H 1.08993 * 109.46851 * 26.39082 * 21 20 19 38 38 H 1.09003 * 109.47112 * 146.39124 * 21 20 19 39 39 H 1.08998 * 109.47354 * 266.38784 * 21 20 19 40 40 H 1.08997 * 109.47504 * 59.99832 * 22 20 19 41 41 H 1.09008 * 109.47530 * 180.02562 * 22 20 19 42 42 H 1.09008 * 109.47249 * 300.00149 * 22 20 19 43 43 H 1.08999 * 109.46998 * 60.62660 * 23 20 19 44 44 H 1.09005 * 109.47282 * 180.62486 * 23 20 19 45 45 H 1.09004 * 109.46828 * 300.62496 * 23 20 19 46 46 H 1.08004 * 119.98505 * 179.97438 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5797 1.1988 -0.0068 5 6 4.2725 -0.0001 -0.0014 6 9 5.6235 -0.0003 -0.0028 7 6 3.5797 -1.1987 0.0049 8 6 4.3323 -2.5044 0.0114 9 7 4.6867 -2.8721 -1.3660 10 6 4.9843 -4.3070 -1.4677 11 6 5.1380 -4.6865 -2.9181 12 1 5.0916 -3.9257 -3.6832 13 6 5.3376 -6.0051 -3.2682 14 7 5.3945 -6.9315 -2.3365 15 14 5.5274 -6.4756 -5.0660 16 1 6.7006 -5.7700 -5.6412 17 1 5.7303 -7.9426 -5.1749 18 1 4.3026 -6.0882 -5.8110 19 6 5.8134 -2.0649 -1.8530 20 6 7.1250 -2.6482 -1.3236 21 6 7.5062 -3.8785 -2.1494 22 6 8.2316 -1.5973 -1.4336 23 6 6.9490 -3.0519 0.1417 24 6 2.1975 -1.1974 0.0063 25 1 -0.3633 0.0050 1.0277 26 1 -0.3634 0.8875 -0.5181 27 1 -0.3634 -0.8924 -0.5094 28 1 1.6573 2.1326 0.0007 29 1 4.1191 2.1345 -0.0117 30 1 5.2407 -2.3972 0.6041 31 1 3.7051 -3.2831 0.4453 32 1 5.9101 -4.5247 -0.9352 33 1 4.1683 -4.8795 -1.0268 34 1 5.5346 -7.8592 -2.5828 35 1 5.8243 -2.0766 -2.9428 36 1 5.7040 -1.0389 -1.5016 37 1 7.0752 -3.7943 -3.1469 38 1 8.5916 -3.9423 -2.2266 39 1 7.1233 -4.7756 -1.6627 40 1 7.9601 -0.7208 -0.8454 41 1 9.1662 -2.0130 -1.0568 42 1 8.3571 -1.3097 -2.4775 43 1 6.1683 -3.8087 0.2187 44 1 7.8867 -3.4572 0.5221 45 1 6.6666 -2.1775 0.7281 46 1 1.6568 -2.1324 0.0108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353421074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:20 Heat of formation + Delta-G solvation = 5.583830 kcal Electronic energy + Delta-G solvation = -25367.681937 eV Core-core repulsion = 21979.829420 eV Total energy + Delta-G solvation = -3387.852517 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.95681 -41.06975 -39.82740 -35.37253 -34.90263 -33.17580 -32.36114 -29.83415 -29.12039 -27.46660 -27.38325 -26.89028 -25.68884 -23.38985 -22.47696 -21.15656 -19.78002 -18.58300 -18.27719 -17.51101 -17.29083 -16.73084 -16.37487 -16.11785 -15.45638 -15.33717 -15.04353 -14.84685 -14.61664 -14.41336 -14.30372 -14.16411 -13.82619 -13.17352 -12.99489 -12.90884 -12.82933 -12.73518 -12.57222 -12.52693 -12.48419 -12.32059 -12.25690 -12.07196 -11.91410 -11.68215 -11.36245 -11.28379 -11.02774 -10.88790 -10.43047 -9.81803 -9.31767 -8.56873 -8.07786 -6.06585 0.26559 0.36643 1.41519 1.41869 1.49077 2.44870 2.66578 3.24217 3.40412 3.56441 3.78694 3.91867 4.00807 4.05361 4.07885 4.20960 4.34565 4.39502 4.51891 4.56039 4.74237 4.77125 4.80619 4.84002 4.90766 4.94111 4.97465 5.04760 5.10602 5.11818 5.14813 5.20707 5.23994 5.27502 5.37446 5.43912 5.45621 5.50468 5.53635 5.67193 5.68374 5.78590 6.02802 6.06574 6.21415 6.51212 6.77329 6.98402 7.52556 9.01747 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.005460 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.531264 B = 5127.021407 C = 6173.619351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.097 4.097 4 C -0.149 4.149 5 C 0.070 3.930 6 F -0.141 7.141 7 C -0.104 4.104 8 C 0.056 3.944 9 N -0.535 5.535 10 C 0.173 3.827 11 C -0.484 4.484 12 H 0.049 0.951 13 C 0.012 3.988 14 N -0.930 5.930 15 Si 0.942 3.058 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.064 3.936 20 C -0.089 4.089 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.155 4.155 24 C -0.095 4.095 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.039 0.961 33 H -0.013 1.013 34 H 0.259 0.741 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.027 0.973 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 16.808 6.793 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.167 4.167 5 C 0.050 3.950 6 F -0.120 7.120 7 C -0.106 4.106 8 C -0.070 4.070 9 N -0.258 5.258 10 C 0.048 3.952 11 C -0.522 4.522 12 H 0.067 0.933 13 C -0.186 4.186 14 N -0.571 5.571 15 Si 0.769 3.231 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.064 4.064 20 C -0.090 4.090 21 C -0.188 4.188 22 C -0.184 4.184 23 C -0.212 4.212 24 C -0.114 4.114 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.180 0.820 29 H 0.172 0.828 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.005 0.995 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.537 16.692 6.502 18.479 hybrid contribution 1.095 -1.302 -0.600 1.804 sum -3.442 15.390 5.902 16.839 Atomic orbital electron populations 1.20822 0.88803 1.03679 1.03364 1.20295 0.97921 0.92390 0.99054 1.21203 0.92657 0.98846 0.98828 1.21359 0.95694 0.96621 1.03063 1.17788 0.76605 0.94839 1.05735 1.91342 1.29741 1.97203 1.93665 1.20014 0.95043 0.93869 1.01663 1.21722 0.99763 0.93511 0.92054 1.62224 1.38253 1.06412 1.18901 1.20421 0.95512 0.82769 0.96520 1.21111 1.46124 0.92141 0.92873 0.93316 1.25476 0.96291 0.96502 1.00311 1.70030 1.52108 1.01142 1.33868 0.85848 0.78650 0.76901 0.81744 1.19621 1.21226 1.20230 1.22452 0.87807 0.97370 0.98741 1.21006 0.96766 0.96174 0.95099 1.22388 0.97463 0.97858 1.01098 1.21772 0.97276 0.97859 1.01506 1.22588 1.01708 1.00838 0.96023 1.20971 0.92245 0.98982 0.99219 0.89775 0.89682 0.91737 0.81974 0.82828 0.90394 0.91828 0.94367 0.99450 0.93183 0.93754 0.89707 0.92661 0.95396 0.92360 0.92249 0.92480 0.92849 0.92108 0.92949 0.91626 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.01 71.24 0.71 -1.00 16 2 C -0.10 -2.13 5.88 -19.86 -0.12 -2.25 16 3 C -0.10 -1.89 9.70 22.26 0.22 -1.67 16 4 C -0.15 -3.36 10.03 22.31 0.22 -3.14 16 5 C 0.07 2.05 6.45 22.38 0.14 2.19 16 6 F -0.14 -4.33 13.04 44.97 0.59 -3.74 16 7 C -0.10 -3.37 5.28 -19.82 -0.10 -3.48 16 8 C 0.06 2.11 4.17 85.56 0.36 2.47 16 9 N -0.54 -23.36 4.63 -905.36 -4.19 -27.55 16 10 C 0.17 8.83 3.64 85.56 0.31 9.14 16 11 C -0.48 -26.53 5.20 25.60 0.13 -26.40 16 12 H 0.05 2.73 6.73 -2.91 -0.02 2.71 16 13 C 0.01 0.64 5.15 84.65 0.44 1.08 16 14 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 15 Si 0.94 44.59 29.54 68.60 2.03 46.62 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 C 0.06 2.59 4.53 86.30 0.39 2.98 16 20 C -0.09 -3.35 0.77 -52.18 -0.04 -3.39 16 21 C -0.13 -5.75 7.15 71.98 0.51 -5.23 16 22 C -0.13 -3.91 8.20 71.98 0.59 -3.32 16 23 C -0.16 -5.63 6.39 71.98 0.46 -5.17 16 24 C -0.10 -2.73 9.33 22.26 0.21 -2.52 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.06 1.07 8.08 -2.39 -0.02 1.06 16 28 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 29 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.08 2.82 3.13 -2.39 -0.01 2.81 16 31 H 0.06 2.45 7.66 -2.39 -0.02 2.43 16 32 H 0.04 2.01 2.22 -2.39 -0.01 2.01 16 33 H -0.01 -0.73 7.86 -2.39 -0.02 -0.75 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.04 1.96 6.76 -2.39 -0.02 1.94 16 36 H 0.09 3.13 3.67 -2.39 -0.01 3.13 16 37 H 0.05 2.64 5.36 -2.39 -0.01 2.62 16 38 H 0.03 1.09 7.77 -2.39 -0.02 1.07 16 39 H 0.06 2.94 4.76 -2.39 -0.01 2.93 16 40 H 0.06 1.70 7.79 -2.39 -0.02 1.68 16 41 H 0.06 1.63 8.12 -2.38 -0.02 1.61 16 42 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.06 2.51 3.72 -2.39 -0.01 2.50 16 44 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.07 2.18 5.81 -2.38 -0.01 2.17 16 46 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -62.23 338.11 4.12 -58.11 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.99 Total: 20.58 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 4.44 Total: -39.72 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -3.91 Total: -81.84 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.59 Total: -3.74 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -62.23 4.12 -58.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353421074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.689 kcal (2) G-P(sol) polarization free energy of solvation -62.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds