Wall clock time and date at job start Tue Mar 31 2020 07:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38221 * 119.98822 * 2 1 4 4 C 1.38441 * 119.97637 * 179.97438 * 3 2 1 5 5 F 1.35093 * 120.02897 * 179.97438 * 4 3 2 6 6 C 1.38480 * 119.94683 * 0.02562 * 4 3 2 7 7 C 1.38187 * 119.97222 * 359.74461 * 6 4 3 8 8 C 1.38220 * 119.98711 * 179.97438 * 2 1 3 9 9 C 1.50702 * 119.97350 * 359.97438 * 8 2 1 10 10 N 1.46903 * 109.47015 * 80.25892 * 9 8 2 11 11 C 1.46899 * 110.99835 * 200.64672 * 10 9 8 12 12 C 1.50700 * 109.47225 * 169.39131 * 11 10 9 13 13 H 1.07998 * 119.99570 * 5.06913 * 12 11 10 14 14 C 1.37873 * 120.00269 * 185.06689 * 12 11 10 15 15 N 1.31512 * 120.00369 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99895 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46881 * 89.99842 * 16 14 12 18 18 H 1.48494 * 109.47201 * 209.99975 * 16 14 12 19 19 H 1.48504 * 109.47092 * 329.99974 * 16 14 12 20 20 C 1.46897 * 111.00108 * 76.68883 * 10 9 8 21 21 C 1.53003 * 109.47151 * 79.22254 * 20 10 9 22 22 C 1.53009 * 109.46675 * 80.95903 * 21 20 10 23 23 C 1.52999 * 109.47097 * 200.96038 * 21 20 10 24 24 C 1.52994 * 109.46929 * 320.96411 * 21 20 10 25 25 H 1.09006 * 109.47098 * 270.02135 * 1 2 3 26 26 H 1.08998 * 109.47263 * 30.01662 * 1 2 3 27 27 H 1.08995 * 109.47582 * 150.01671 * 1 2 3 28 28 H 1.07997 * 120.01455 * 359.96562 * 3 2 1 29 29 H 1.07994 * 120.01386 * 180.02562 * 6 4 3 30 30 H 1.07997 * 119.98233 * 180.25419 * 7 6 4 31 31 H 1.09003 * 109.47027 * 320.25673 * 9 8 2 32 32 H 1.09006 * 109.46840 * 200.25721 * 9 8 2 33 33 H 1.09000 * 109.46678 * 289.39069 * 11 10 9 34 34 H 1.08999 * 109.47403 * 49.38543 * 11 10 9 35 35 H 0.96998 * 120.00230 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47169 * 199.22595 * 20 10 9 37 37 H 1.08998 * 109.47285 * 319.22468 * 20 10 9 38 38 H 1.08996 * 109.46793 * 58.47942 * 22 21 20 39 39 H 1.08996 * 109.46843 * 178.47730 * 22 21 20 40 40 H 1.08996 * 109.47207 * 298.48041 * 22 21 20 41 41 H 1.08997 * 109.46972 * 60.00081 * 23 21 20 42 42 H 1.08997 * 109.46746 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.46615 * 299.99712 * 23 21 20 44 44 H 1.08999 * 109.47506 * 47.23697 * 24 21 20 45 45 H 1.09006 * 109.47128 * 167.23622 * 24 21 20 46 46 H 1.09002 * 109.47013 * 287.23378 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1969 0.0005 5 9 4.2585 2.3663 0.0000 6 6 4.2733 -0.0032 0.0005 7 6 3.5804 -1.1988 0.0053 8 6 2.1978 -1.1972 0.0005 9 6 1.4434 -2.5018 0.0017 10 7 0.9949 -2.8093 -1.3630 11 6 -0.1213 -3.7642 -1.3476 12 6 -0.7222 -3.8568 -2.7265 13 1 -0.2658 -3.3291 -3.5509 14 6 -1.8545 -4.6151 -2.9356 15 7 -2.3792 -4.6955 -4.1389 16 14 -2.6443 -5.5273 -1.5095 17 1 -3.6521 -4.6516 -0.8592 18 1 -3.3081 -6.7558 -2.0145 19 1 -1.6003 -5.8994 -0.5210 20 6 2.1062 -3.3115 -2.1818 21 6 2.3537 -4.7859 -1.8566 22 6 1.3456 -5.6516 -2.6153 23 6 3.7739 -5.1696 -2.2770 24 6 2.1887 -5.0110 -0.3523 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6579 2.1325 -0.0006 29 1 5.3532 -0.0047 0.0014 30 1 4.1192 -2.1348 0.0095 31 1 0.5777 -2.4203 0.6590 32 1 2.0963 -3.2987 0.3578 33 1 0.2441 -4.7452 -1.0439 34 1 -0.8801 -3.4249 -0.6426 35 1 -3.1756 -5.2293 -4.2860 36 1 1.8548 -3.2095 -3.2375 37 1 3.0061 -2.7358 -1.9654 38 1 1.4448 -5.4710 -3.6856 39 1 1.5391 -6.7034 -2.4048 40 1 0.3351 -5.3970 -2.2960 41 1 4.4919 -4.5528 -1.7365 42 1 3.9499 -6.2201 -2.0457 43 1 3.8912 -5.0092 -3.3488 44 1 1.2701 -4.5331 -0.0119 45 1 2.1390 -6.0806 -0.1482 46 1 3.0396 -4.5796 0.1751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353422858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:22 Heat of formation + Delta-G solvation = 27.987715 kcal Electronic energy + Delta-G solvation = -25141.623047 eV Core-core repulsion = 21754.742035 eV Total energy + Delta-G solvation = -3386.881011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.79002 -40.14904 -38.59214 -33.95680 -32.92723 -32.47769 -30.92108 -28.55598 -27.85892 -26.86297 -26.17430 -25.42579 -23.54674 -22.14327 -20.95664 -20.08453 -18.32583 -17.07328 -16.90709 -16.40218 -15.70498 -15.50352 -15.19593 -14.88900 -14.29131 -13.96783 -13.80464 -13.57187 -13.49897 -13.10751 -12.97558 -12.83193 -12.51613 -12.09685 -11.81778 -11.60227 -11.56385 -11.55832 -11.21986 -11.09806 -10.94317 -10.86744 -10.72385 -10.58295 -10.48960 -10.12536 -9.87196 -9.81928 -9.41673 -9.18493 -8.76637 -8.56735 -8.29308 -7.12217 -6.09535 -4.01596 1.30718 1.37026 3.22772 3.30278 3.32555 3.68577 4.35446 4.36492 4.77612 4.88834 4.96237 5.13818 5.22645 5.31127 5.33104 5.36356 5.42388 5.50933 5.73617 5.81277 5.85784 5.90323 5.92642 5.97986 6.05551 6.08901 6.12434 6.21751 6.24811 6.25901 6.42452 6.42729 6.50510 6.55683 6.63147 6.70065 6.84140 6.86033 6.91871 6.95010 7.04508 7.07999 7.52136 7.74631 7.89239 8.03033 8.62075 9.01083 9.49792 11.03294 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.005225 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.537441 B = 5357.132585 C = 6253.684343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.159 4.159 4 C 0.088 3.912 5 F -0.148 7.148 6 C -0.164 4.164 7 C -0.086 4.086 8 C -0.070 4.070 9 C 0.049 3.951 10 N -0.513 5.513 11 C 0.128 3.872 12 C -0.492 4.492 13 H 0.081 0.919 14 C 0.069 3.931 15 N -0.896 5.896 16 Si 0.862 3.138 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.078 3.922 21 C -0.094 4.094 22 C -0.176 4.176 23 C -0.135 4.135 24 C -0.167 4.167 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.021 0.979 40 H 0.135 0.865 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.588 4.882 9.745 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.032 4.032 3 C -0.178 4.178 4 C 0.069 3.931 5 F -0.126 7.126 6 C -0.183 4.183 7 C -0.104 4.104 8 C -0.071 4.071 9 C -0.078 4.078 10 N -0.236 5.236 11 C 0.003 3.997 12 C -0.531 4.531 13 H 0.099 0.901 14 C -0.132 4.132 15 N -0.534 5.534 16 Si 0.689 3.311 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.051 4.051 21 C -0.096 4.096 22 C -0.232 4.232 23 C -0.193 4.193 24 C -0.224 4.224 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.152 0.848 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.261 5.276 9.418 14.894 hybrid contribution 0.058 -0.996 0.897 1.341 sum 10.320 4.281 10.315 15.206 Atomic orbital electron populations 1.20947 0.90249 1.04890 1.01961 1.19658 0.96710 0.91280 0.95505 1.21000 0.92075 0.99297 1.05417 1.17646 0.90173 0.81055 1.04240 1.91457 1.80416 1.46566 1.94199 1.20990 1.00307 0.91359 1.05612 1.20886 0.93704 0.97193 0.98643 1.19969 0.93089 0.95451 0.98607 1.21929 0.99256 0.93231 0.93349 1.62160 1.07776 1.45579 1.08050 1.21095 0.88754 0.91243 0.98614 1.20859 1.09970 1.28769 0.93457 0.90065 1.24849 0.96598 0.96650 0.95149 1.69869 1.22066 1.40814 1.20699 0.87076 0.80395 0.80045 0.83565 1.20137 1.21209 1.19059 1.22104 0.92608 0.91049 0.99294 1.21090 0.95291 0.98292 0.94901 1.22989 1.04401 0.95793 1.00024 1.21850 0.96176 1.00291 1.00959 1.22769 1.01913 1.01222 0.96449 0.91627 0.91780 0.88322 0.85261 0.85407 0.85559 0.90656 0.90904 0.95253 0.96415 0.92645 0.90339 0.92799 0.93227 0.96022 0.84758 0.93729 0.93507 0.92896 0.89624 0.93524 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.26 36.00 0.33 -1.37 16 2 C -0.03 -0.44 5.88 -104.64 -0.62 -1.06 16 3 C -0.16 -2.15 9.68 -39.51 -0.38 -2.54 16 4 C 0.09 1.20 7.30 -39.42 -0.29 0.92 16 5 F -0.15 -2.04 17.27 2.25 0.04 -2.00 16 6 C -0.16 -2.07 10.03 -39.51 -0.40 -2.47 16 7 C -0.09 -1.11 8.53 -39.59 -0.34 -1.45 16 8 C -0.07 -1.01 5.00 -104.62 -0.52 -1.54 16 9 C 0.05 0.76 3.22 -4.97 -0.02 0.74 16 10 N -0.51 -9.46 3.97 -237.51 -0.94 -10.40 16 11 C 0.13 2.72 2.64 -4.98 -0.01 2.71 16 12 C -0.49 -12.54 6.79 -34.44 -0.23 -12.77 16 13 H 0.08 2.32 7.29 -52.49 -0.38 1.94 16 14 C 0.07 1.85 5.13 -17.82 -0.09 1.76 16 15 N -0.90 -25.90 13.96 55.43 0.77 -25.13 16 16 Si 0.86 20.02 26.96 -169.99 -4.58 15.44 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -5.83 6.69 56.52 0.38 -5.45 16 20 C 0.08 1.37 4.68 -3.82 -0.02 1.36 16 21 C -0.09 -1.56 0.77 -154.51 -0.12 -1.68 16 22 C -0.18 -3.47 7.07 37.16 0.26 -3.21 16 23 C -0.13 -1.91 8.34 37.16 0.31 -1.60 16 24 C -0.17 -2.56 6.22 37.15 0.23 -2.33 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.81 8.09 -51.93 -0.42 0.40 16 27 H 0.10 1.61 6.35 -51.93 -0.33 1.28 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.13 1.43 8.01 -52.49 -0.42 1.01 16 31 H 0.08 1.14 6.83 -51.93 -0.35 0.78 16 32 H 0.07 1.04 3.51 -51.93 -0.18 0.86 16 33 H 0.03 0.63 2.29 -51.93 -0.12 0.52 16 34 H 0.02 0.39 6.95 -51.93 -0.36 0.03 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.08 1.59 7.10 -51.93 -0.37 1.22 16 37 H 0.05 0.86 6.21 -51.93 -0.32 0.54 16 38 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.13 3.01 2.01 -51.93 -0.10 2.90 16 41 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.41 3.05 -51.93 -0.16 1.25 16 45 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 46 H 0.05 0.63 7.01 -51.93 -0.36 0.27 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -27.12 339.57 -8.33 -35.46 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.84 Total: 6.05 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -1.90 Total: -24.52 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.17 Total: -35.54 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.58 Total: 15.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.12 -8.33 -35.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353422858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.443 kcal (2) G-P(sol) polarization free energy of solvation -27.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds