Wall clock time and date at job start Tue Mar 31 2020 07:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38221 * 119.98822 * 2 1 4 4 C 1.38441 * 119.97637 * 179.97438 * 3 2 1 5 5 F 1.35093 * 120.02897 * 179.97438 * 4 3 2 6 6 C 1.38480 * 119.94683 * 0.02562 * 4 3 2 7 7 C 1.38187 * 119.97222 * 359.74461 * 6 4 3 8 8 C 1.38220 * 119.98711 * 179.97438 * 2 1 3 9 9 C 1.50702 * 119.97350 * 359.97438 * 8 2 1 10 10 N 1.46903 * 109.47015 * 80.25892 * 9 8 2 11 11 C 1.46899 * 110.99835 * 200.64672 * 10 9 8 12 12 C 1.50700 * 109.47225 * 169.39131 * 11 10 9 13 13 H 1.07998 * 119.99570 * 5.06913 * 12 11 10 14 14 C 1.37873 * 120.00269 * 185.06689 * 12 11 10 15 15 N 1.31512 * 120.00369 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99895 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46881 * 89.99842 * 16 14 12 18 18 H 1.48494 * 109.47201 * 209.99975 * 16 14 12 19 19 H 1.48504 * 109.47092 * 329.99974 * 16 14 12 20 20 C 1.46897 * 111.00108 * 76.68883 * 10 9 8 21 21 C 1.53003 * 109.47151 * 79.22254 * 20 10 9 22 22 C 1.53009 * 109.46675 * 80.95903 * 21 20 10 23 23 C 1.52999 * 109.47097 * 200.96038 * 21 20 10 24 24 C 1.52994 * 109.46929 * 320.96411 * 21 20 10 25 25 H 1.09006 * 109.47098 * 270.02135 * 1 2 3 26 26 H 1.08998 * 109.47263 * 30.01662 * 1 2 3 27 27 H 1.08995 * 109.47582 * 150.01671 * 1 2 3 28 28 H 1.07997 * 120.01455 * 359.96562 * 3 2 1 29 29 H 1.07994 * 120.01386 * 180.02562 * 6 4 3 30 30 H 1.07997 * 119.98233 * 180.25419 * 7 6 4 31 31 H 1.09003 * 109.47027 * 320.25673 * 9 8 2 32 32 H 1.09006 * 109.46840 * 200.25721 * 9 8 2 33 33 H 1.09000 * 109.46678 * 289.39069 * 11 10 9 34 34 H 1.08999 * 109.47403 * 49.38543 * 11 10 9 35 35 H 0.96998 * 120.00230 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47169 * 199.22595 * 20 10 9 37 37 H 1.08998 * 109.47285 * 319.22468 * 20 10 9 38 38 H 1.08996 * 109.46793 * 58.47942 * 22 21 20 39 39 H 1.08996 * 109.46843 * 178.47730 * 22 21 20 40 40 H 1.08996 * 109.47207 * 298.48041 * 22 21 20 41 41 H 1.08997 * 109.46972 * 60.00081 * 23 21 20 42 42 H 1.08997 * 109.46746 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.46615 * 299.99712 * 23 21 20 44 44 H 1.08999 * 109.47506 * 47.23697 * 24 21 20 45 45 H 1.09006 * 109.47128 * 167.23622 * 24 21 20 46 46 H 1.09002 * 109.47013 * 287.23378 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1969 0.0005 5 9 4.2585 2.3663 0.0000 6 6 4.2733 -0.0032 0.0005 7 6 3.5804 -1.1988 0.0053 8 6 2.1978 -1.1972 0.0005 9 6 1.4434 -2.5018 0.0017 10 7 0.9949 -2.8093 -1.3630 11 6 -0.1213 -3.7642 -1.3476 12 6 -0.7222 -3.8568 -2.7265 13 1 -0.2658 -3.3291 -3.5509 14 6 -1.8545 -4.6151 -2.9356 15 7 -2.3792 -4.6955 -4.1389 16 14 -2.6443 -5.5273 -1.5095 17 1 -3.6521 -4.6516 -0.8592 18 1 -3.3081 -6.7558 -2.0145 19 1 -1.6003 -5.8994 -0.5210 20 6 2.1062 -3.3115 -2.1818 21 6 2.3537 -4.7859 -1.8566 22 6 1.3456 -5.6516 -2.6153 23 6 3.7739 -5.1696 -2.2770 24 6 2.1887 -5.0110 -0.3523 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6579 2.1325 -0.0006 29 1 5.3532 -0.0047 0.0014 30 1 4.1192 -2.1348 0.0095 31 1 0.5777 -2.4203 0.6590 32 1 2.0963 -3.2987 0.3578 33 1 0.2441 -4.7452 -1.0439 34 1 -0.8801 -3.4249 -0.6426 35 1 -3.1756 -5.2293 -4.2860 36 1 1.8548 -3.2095 -3.2375 37 1 3.0061 -2.7358 -1.9654 38 1 1.4448 -5.4710 -3.6856 39 1 1.5391 -6.7034 -2.4048 40 1 0.3351 -5.3970 -2.2960 41 1 4.4919 -4.5528 -1.7365 42 1 3.9499 -6.2201 -2.0457 43 1 3.8912 -5.0092 -3.3488 44 1 1.2701 -4.5331 -0.0119 45 1 2.1390 -6.0806 -0.1482 46 1 3.0396 -4.5796 0.1751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353422858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:22 Heat of formation + Delta-G solvation = 14.003699 kcal Electronic energy + Delta-G solvation = -25142.229439 eV Core-core repulsion = 21754.742035 eV Total energy + Delta-G solvation = -3387.487404 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.83840 -41.45493 -39.75390 -35.29240 -34.80350 -33.55032 -32.28011 -30.17760 -29.10601 -27.97214 -27.51278 -26.80448 -25.10520 -23.21593 -22.37229 -21.35753 -19.72103 -18.82806 -18.09736 -17.50422 -17.01122 -16.62500 -16.57378 -16.31439 -16.00855 -15.19218 -15.04557 -14.79262 -14.61494 -14.52507 -14.20149 -14.00916 -13.99142 -13.45447 -13.15046 -13.07500 -12.90036 -12.76039 -12.51588 -12.41925 -12.36705 -12.34472 -12.03374 -11.91667 -11.81137 -11.72844 -11.51574 -11.28514 -11.06617 -10.85604 -10.62297 -9.78112 -9.37223 -8.56479 -8.17351 -6.11914 0.24757 0.36315 1.38110 1.39825 1.47859 2.39758 2.62546 3.16636 3.34271 3.51908 3.82701 3.94186 4.01849 4.06135 4.08803 4.21841 4.28707 4.36549 4.58209 4.63381 4.73188 4.76089 4.77194 4.84716 4.87084 4.90129 4.96348 4.97539 5.06905 5.11631 5.13486 5.20216 5.20997 5.23455 5.31871 5.39129 5.41434 5.47863 5.48399 5.57985 5.69251 5.79281 6.03711 6.04803 6.14515 6.53764 6.81130 6.88913 7.43130 8.99450 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.005225 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.537441 B = 5357.132585 C = 6253.684343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 C -0.165 4.165 4 C 0.077 3.923 5 F -0.150 7.150 6 C -0.160 4.160 7 C -0.083 4.083 8 C -0.084 4.084 9 C 0.055 3.945 10 N -0.528 5.528 11 C 0.139 3.861 12 C -0.476 4.476 13 H 0.033 0.967 14 C 0.012 3.988 15 N -0.950 5.950 16 Si 0.923 3.077 17 H -0.271 1.271 18 H -0.291 1.291 19 H -0.240 1.240 20 C 0.083 3.917 21 C -0.091 4.091 22 C -0.175 4.175 23 C -0.130 4.130 24 C -0.166 4.166 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.018 0.982 35 H 0.262 0.738 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.020 0.980 39 H 0.033 0.967 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.786 4.584 12.704 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.045 4.045 3 C -0.184 4.184 4 C 0.058 3.942 5 F -0.129 7.129 6 C -0.179 4.179 7 C -0.101 4.101 8 C -0.085 4.085 9 C -0.071 4.071 10 N -0.250 5.250 11 C 0.013 3.987 12 C -0.515 4.515 13 H 0.051 0.949 14 C -0.185 4.185 15 N -0.592 5.592 16 Si 0.747 3.253 17 H -0.196 1.196 18 H -0.217 1.217 19 H -0.163 1.163 20 C -0.045 4.045 21 C -0.093 4.093 22 C -0.231 4.231 23 C -0.188 4.188 24 C -0.222 4.222 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.170 0.830 30 H 0.168 0.832 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.052 0.948 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.485 4.993 12.402 18.293 hybrid contribution -0.549 -0.798 -0.099 0.974 sum 11.936 4.195 12.304 17.648 Atomic orbital electron populations 1.20879 0.90389 1.03653 1.02737 1.19765 0.96839 0.91778 0.96146 1.21129 0.92397 0.99576 1.05255 1.17857 0.90344 0.81464 1.04546 1.91451 1.80408 1.46813 1.94249 1.21267 1.01582 0.90703 1.04318 1.21112 0.93030 0.98311 0.97644 1.19987 0.93904 0.94848 0.99791 1.21927 0.99800 0.94321 0.91085 1.61968 1.07678 1.44840 1.10555 1.20880 0.89749 0.92622 0.95444 1.20988 1.09277 1.26817 0.94413 0.94858 1.25618 0.97451 0.97887 0.97501 1.70041 1.23065 1.42789 1.23321 0.86086 0.79954 0.78463 0.80793 1.19624 1.21711 1.16274 1.21993 0.92979 0.92531 0.96992 1.21039 0.95942 0.96456 0.95854 1.22875 1.04110 0.97350 0.98749 1.21797 0.94718 1.01459 1.00830 1.22714 1.02608 1.01915 0.94941 0.89895 0.91330 0.91144 0.84190 0.83019 0.83232 0.90649 0.88996 0.93977 0.96428 0.92931 0.94422 0.90514 0.96050 0.94788 0.87341 0.91102 0.92485 0.93744 0.90898 0.92816 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 9.26 71.23 0.66 -2.55 16 2 C -0.04 -1.21 5.88 -19.87 -0.12 -1.33 16 3 C -0.16 -4.19 9.68 22.31 0.22 -3.97 16 4 C 0.08 1.93 7.30 22.38 0.16 2.09 16 5 F -0.15 -3.85 17.27 44.97 0.78 -3.07 16 6 C -0.16 -3.49 10.03 22.32 0.22 -3.27 16 7 C -0.08 -1.83 8.53 22.26 0.19 -1.64 16 8 C -0.08 -2.23 5.00 -19.86 -0.10 -2.33 16 9 C 0.06 1.55 3.22 85.56 0.28 1.83 16 10 N -0.53 -19.14 3.97 -905.35 -3.59 -22.73 16 11 C 0.14 5.88 2.64 85.56 0.23 6.10 16 12 C -0.48 -25.27 6.79 25.60 0.17 -25.10 16 13 H 0.03 2.04 7.29 -2.91 -0.02 2.02 16 14 C 0.01 0.66 5.13 84.65 0.43 1.09 16 15 N -0.95 -57.71 13.96 21.45 0.30 -57.41 16 16 Si 0.92 41.56 26.96 68.60 1.85 43.41 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 19 H -0.24 -9.66 6.69 99.48 0.67 -9.00 16 20 C 0.08 2.89 4.68 86.30 0.40 3.29 16 21 C -0.09 -2.85 0.77 -52.18 -0.04 -2.89 16 22 C -0.17 -6.89 7.07 71.99 0.51 -6.38 16 23 C -0.13 -3.29 8.34 71.98 0.60 -2.69 16 24 C -0.17 -4.42 6.22 71.98 0.45 -3.97 16 25 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 27 H 0.07 2.30 6.35 -2.39 -0.02 2.28 16 28 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.15 2.58 8.01 -2.91 -0.02 2.56 16 31 H 0.08 2.12 6.83 -2.39 -0.02 2.10 16 32 H 0.09 2.24 3.51 -2.38 -0.01 2.23 16 33 H 0.04 1.74 2.29 -2.39 -0.01 1.73 16 34 H 0.02 0.75 6.95 -2.39 -0.02 0.73 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.04 1.59 7.10 -2.39 -0.02 1.58 16 37 H 0.08 2.28 6.21 -2.39 -0.01 2.26 16 38 H 0.02 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 4.89 2.01 -2.39 0.00 4.89 16 41 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 44 H 0.07 2.15 3.05 -2.39 -0.01 2.14 16 45 H 0.05 1.38 8.08 -2.38 -0.02 1.36 16 46 H 0.08 1.65 7.01 -2.39 -0.02 1.63 16 Total: -1.00 -61.88 339.57 4.54 -57.33 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.94 Total: 24.19 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 4.27 Total: -41.72 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -3.29 Total: -80.15 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.07 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.85 Total: 43.41 kcal Total: -61.88 4.54 -57.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353422858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.339 kcal (2) G-P(sol) polarization free energy of solvation -61.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds