Wall clock time and date at job start Tue Mar 31 2020 07:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38220 * 120.01195 * 2 1 4 4 C 1.38220 * 120.02604 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.97376 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46871 * 77.76949 * 5 4 3 7 7 C 1.46907 * 110.99785 * 154.14451 * 6 5 4 8 8 C 1.50699 * 109.46782 * 207.30937 * 7 6 5 9 9 H 1.07994 * 120.00244 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99769 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99768 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00123 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47360 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47482 * 120.00069 * 12 10 8 15 15 H 1.48503 * 109.46919 * 240.00320 * 12 10 8 16 16 C 1.46902 * 110.99882 * 278.09560 * 6 5 4 17 17 C 1.52994 * 109.47317 * 311.29119 * 16 6 5 18 18 C 1.53006 * 109.47014 * 89.79871 * 17 16 6 19 19 C 1.53001 * 109.47595 * 209.79930 * 17 16 6 20 20 C 1.53008 * 109.47052 * 329.80155 * 17 16 6 21 21 C 1.38264 * 120.05027 * 359.97438 * 4 3 2 22 22 C 1.38174 * 120.02630 * 0.02562 * 21 4 3 23 23 C 1.38440 * 120.01335 * 179.97438 * 2 1 3 24 24 F 1.35095 * 120.02587 * 359.74103 * 23 2 1 25 25 H 1.09003 * 109.46548 * 270.01674 * 1 2 3 26 26 H 1.08996 * 109.47296 * 30.01763 * 1 2 3 27 27 H 1.08998 * 109.46748 * 150.02167 * 1 2 3 28 28 H 1.08005 * 119.98635 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46992 * 197.76817 * 5 4 3 30 30 H 1.08999 * 109.46763 * 317.77308 * 5 4 3 31 31 H 1.08999 * 109.46385 * 327.30733 * 7 6 5 32 32 H 1.08993 * 109.46849 * 87.30948 * 7 6 5 33 33 H 0.97002 * 119.99821 * 179.97438 * 11 10 8 34 34 H 1.08994 * 109.47136 * 71.29226 * 16 6 5 35 35 H 1.09006 * 109.46531 * 191.29263 * 16 6 5 36 36 H 1.08996 * 109.46832 * 53.07963 * 18 17 16 37 37 H 1.09007 * 109.46797 * 173.07439 * 18 17 16 38 38 H 1.08996 * 109.47379 * 293.07576 * 18 17 16 39 39 H 1.09005 * 109.46393 * 60.00004 * 19 17 16 40 40 H 1.08997 * 109.47773 * 179.97438 * 19 17 16 41 41 H 1.08996 * 109.47294 * 300.00559 * 19 17 16 42 42 H 1.08994 * 109.47260 * 37.25760 * 20 17 16 43 43 H 1.09002 * 109.46965 * 157.25757 * 20 17 16 44 44 H 1.08996 * 109.47162 * 277.24950 * 20 17 16 45 45 H 1.07997 * 119.98486 * 180.02562 * 21 4 3 46 46 H 1.08001 * 120.01180 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3332 2.5029 0.0000 6 7 4.3240 3.0727 1.3540 7 6 5.4837 3.9498 1.5639 8 6 5.8348 3.9762 3.0292 9 1 5.2548 3.3990 3.7339 10 6 6.8971 4.7367 3.4699 11 7 7.6043 5.4385 2.6114 12 14 7.3328 4.7689 5.2860 13 1 6.3907 3.9003 6.0366 14 1 8.7197 4.2719 5.4713 15 1 7.2336 6.1608 5.7942 16 6 3.0683 3.7888 1.6153 17 6 2.7678 4.7334 0.4499 18 6 1.9357 3.9970 -0.6020 19 6 1.9854 5.9439 0.9631 20 6 4.0818 5.2039 -0.1771 21 6 4.2733 0.0006 -0.0005 22 6 3.5843 -1.1971 -0.0005 23 6 2.1995 -1.1988 0.0005 24 9 1.5249 -2.3692 0.0063 25 1 -0.3632 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1322 -0.0004 29 1 5.3624 2.3291 -0.3141 30 1 3.8551 3.1981 -0.6900 31 1 6.3325 3.5724 0.9936 32 1 5.2413 4.9586 1.2301 33 1 8.3514 5.9738 2.9215 34 1 2.2553 3.0703 1.7195 35 1 3.1637 4.3656 2.5353 36 1 1.0587 3.5561 -0.1280 37 1 1.6178 4.7005 -1.3715 38 1 2.5378 3.2098 -1.0557 39 1 2.5782 6.4685 1.7125 40 1 1.7717 6.6171 0.1330 41 1 1.0493 5.6088 1.4099 42 1 4.8001 4.3842 -0.1734 43 1 3.9007 5.5236 -1.2033 44 1 4.4805 6.0391 0.3986 45 1 5.3532 0.0021 -0.0005 46 1 4.1256 -2.1317 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353422900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:42 Heat of formation + Delta-G solvation = 32.555909 kcal Electronic energy + Delta-G solvation = -24880.223850 eV Core-core repulsion = 21493.540931 eV Total energy + Delta-G solvation = -3386.682919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.74209 -40.34456 -38.33941 -34.15498 -32.96570 -32.31412 -31.11312 -27.90308 -27.45405 -27.18014 -26.53443 -25.77174 -23.65554 -22.23043 -20.94912 -20.02941 -18.56201 -17.30742 -16.53816 -16.43401 -15.59357 -15.38064 -15.03854 -14.81496 -14.30974 -14.14466 -13.86812 -13.45857 -13.30562 -13.21953 -13.15444 -12.96509 -12.51512 -12.22510 -12.00847 -11.70961 -11.57058 -11.35000 -11.22923 -11.07760 -10.95147 -10.93175 -10.70702 -10.66452 -10.42829 -10.37102 -9.95929 -9.73765 -9.71828 -9.11229 -8.69576 -8.38228 -8.21590 -7.05873 -5.98366 -3.98097 1.37828 1.43600 3.31961 3.40001 3.45371 3.76496 4.44546 4.46071 4.80770 4.87782 4.98055 5.12341 5.15274 5.17081 5.31419 5.37203 5.40712 5.45779 5.56458 5.65877 5.70270 5.76364 5.79298 5.90140 5.91071 5.97288 6.04088 6.12686 6.20686 6.24152 6.25850 6.35816 6.37719 6.41683 6.50415 6.58229 6.66090 6.78357 6.85774 6.87477 7.13364 7.22351 7.43888 7.87207 8.13610 8.22611 8.58319 9.09458 9.64877 11.10807 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.004896 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.535414 B = 5717.727760 C = 6749.916544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.058 4.058 5 C 0.052 3.948 6 N -0.523 5.523 7 C 0.160 3.840 8 C -0.497 4.497 9 H 0.061 0.939 10 C 0.054 3.946 11 N -0.902 5.902 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.068 3.932 17 C -0.102 4.102 18 C -0.164 4.164 19 C -0.135 4.135 20 C -0.169 4.169 21 C -0.085 4.085 22 C -0.151 4.151 23 C 0.078 3.922 24 F -0.147 7.147 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.152 0.848 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.259 0.741 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.067 0.933 45 H 0.130 0.870 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.157 -6.203 -8.356 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.124 4.124 3 C -0.131 4.131 4 C -0.059 4.059 5 C -0.075 4.075 6 N -0.246 5.246 7 C 0.036 3.964 8 C -0.536 4.536 9 H 0.079 0.921 10 C -0.147 4.147 11 N -0.542 5.542 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.061 4.061 17 C -0.104 4.104 18 C -0.220 4.220 19 C -0.193 4.193 20 C -0.225 4.225 21 C -0.104 4.104 22 C -0.170 4.170 23 C 0.059 3.941 24 F -0.126 7.126 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.169 0.831 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.148 0.852 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.968 -6.518 -8.008 15.806 hybrid contribution 0.288 0.420 0.567 0.762 sum -11.680 -6.097 -7.441 15.131 Atomic orbital electron populations 1.20683 0.90756 1.02769 1.02555 1.19894 0.96576 0.92084 1.03831 1.21735 0.94323 0.98072 0.98986 1.20122 0.93442 0.95763 0.96619 1.21937 0.99580 0.92484 0.93519 1.62227 1.03541 1.36878 1.21905 1.20636 0.86104 0.92257 0.97397 1.21279 1.13180 1.26197 0.92984 0.92116 1.24940 0.96387 0.95779 0.97549 1.69954 1.20085 1.30431 1.33740 0.86521 0.78229 0.77566 0.85585 1.19765 1.21181 1.21249 1.22314 0.92439 0.94233 0.97097 1.21202 0.95756 0.96447 0.96959 1.22799 0.99599 1.00806 0.98835 1.21853 0.99601 0.97181 1.00631 1.22946 0.97414 1.03431 0.98743 1.20960 1.00276 0.90945 0.98171 1.21050 0.92108 0.99606 1.04232 1.17526 0.90103 0.80686 1.05822 1.91428 1.80549 1.46360 1.94271 0.91063 0.91248 0.91620 0.83137 0.90828 0.90221 0.95911 0.94371 0.93159 0.92361 0.90182 0.92449 0.93130 0.90281 0.92208 0.93457 0.93205 0.89006 0.94471 0.91405 0.85190 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.83 36.01 0.35 -0.83 16 2 C -0.12 -1.66 5.89 -104.55 -0.62 -2.27 16 3 C -0.11 -1.59 7.33 -39.59 -0.29 -1.88 16 4 C -0.06 -0.90 5.31 -104.62 -0.56 -1.45 16 5 C 0.05 0.86 3.71 -4.97 -0.02 0.84 16 6 N -0.52 -10.40 4.46 -237.51 -1.06 -11.46 16 7 C 0.16 3.84 3.41 -4.97 -0.02 3.82 16 8 C -0.50 -13.56 8.94 -34.44 -0.31 -13.86 16 9 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 11 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 12 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 C 0.07 1.20 4.85 -3.83 -0.02 1.18 16 17 C -0.10 -1.52 0.77 -154.50 -0.12 -1.64 16 18 C -0.16 -2.03 6.39 37.16 0.24 -1.79 16 19 C -0.13 -1.86 8.19 37.16 0.30 -1.56 16 20 C -0.17 -2.84 6.20 37.16 0.23 -2.61 16 21 C -0.08 -1.25 9.66 -39.60 -0.38 -1.63 16 22 C -0.15 -2.08 10.03 -39.52 -0.40 -2.48 16 23 C 0.08 1.11 7.24 -39.42 -0.29 0.82 16 24 F -0.15 -2.08 16.48 2.25 0.04 -2.04 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.06 0.67 7.64 -51.93 -0.40 0.27 16 28 H 0.15 1.92 2.67 -52.48 -0.14 1.78 16 29 H 0.07 1.26 7.22 -51.93 -0.38 0.89 16 30 H 0.08 1.22 2.35 -51.93 -0.12 1.10 16 31 H 0.02 0.59 7.37 -51.93 -0.38 0.21 16 32 H 0.04 0.94 3.84 -51.93 -0.20 0.74 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.06 0.95 6.11 -51.93 -0.32 0.64 16 35 H 0.08 1.59 7.36 -51.93 -0.38 1.21 16 36 H 0.06 0.64 6.41 -51.93 -0.33 0.31 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.00 3.59 -51.93 -0.19 0.82 16 39 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.68 2.69 -51.93 -0.14 1.54 16 43 H 0.04 0.55 7.94 -51.93 -0.41 0.13 16 44 H 0.07 1.29 6.75 -51.93 -0.35 0.94 16 45 H 0.13 1.79 8.02 -52.49 -0.42 1.37 16 46 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -28.68 341.19 -8.80 -37.48 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.66 Total: 3.56 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -1.98 Total: -23.95 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.32 Total: -36.68 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.68 -8.80 -37.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353422900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.039 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds