Wall clock time and date at job start Tue Mar 31 2020 07:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38220 * 120.01195 * 2 1 4 4 C 1.38220 * 120.02604 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.97376 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46871 * 77.76949 * 5 4 3 7 7 C 1.46907 * 110.99785 * 154.14451 * 6 5 4 8 8 C 1.50699 * 109.46782 * 207.30937 * 7 6 5 9 9 H 1.07994 * 120.00244 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99769 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99768 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00123 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47360 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47482 * 120.00069 * 12 10 8 15 15 H 1.48503 * 109.46919 * 240.00320 * 12 10 8 16 16 C 1.46902 * 110.99882 * 278.09560 * 6 5 4 17 17 C 1.52994 * 109.47317 * 311.29119 * 16 6 5 18 18 C 1.53006 * 109.47014 * 89.79871 * 17 16 6 19 19 C 1.53001 * 109.47595 * 209.79930 * 17 16 6 20 20 C 1.53008 * 109.47052 * 329.80155 * 17 16 6 21 21 C 1.38264 * 120.05027 * 359.97438 * 4 3 2 22 22 C 1.38174 * 120.02630 * 0.02562 * 21 4 3 23 23 C 1.38440 * 120.01335 * 179.97438 * 2 1 3 24 24 F 1.35095 * 120.02587 * 359.74103 * 23 2 1 25 25 H 1.09003 * 109.46548 * 270.01674 * 1 2 3 26 26 H 1.08996 * 109.47296 * 30.01763 * 1 2 3 27 27 H 1.08998 * 109.46748 * 150.02167 * 1 2 3 28 28 H 1.08005 * 119.98635 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46992 * 197.76817 * 5 4 3 30 30 H 1.08999 * 109.46763 * 317.77308 * 5 4 3 31 31 H 1.08999 * 109.46385 * 327.30733 * 7 6 5 32 32 H 1.08993 * 109.46849 * 87.30948 * 7 6 5 33 33 H 0.97002 * 119.99821 * 179.97438 * 11 10 8 34 34 H 1.08994 * 109.47136 * 71.29226 * 16 6 5 35 35 H 1.09006 * 109.46531 * 191.29263 * 16 6 5 36 36 H 1.08996 * 109.46832 * 53.07963 * 18 17 16 37 37 H 1.09007 * 109.46797 * 173.07439 * 18 17 16 38 38 H 1.08996 * 109.47379 * 293.07576 * 18 17 16 39 39 H 1.09005 * 109.46393 * 60.00004 * 19 17 16 40 40 H 1.08997 * 109.47773 * 179.97438 * 19 17 16 41 41 H 1.08996 * 109.47294 * 300.00559 * 19 17 16 42 42 H 1.08994 * 109.47260 * 37.25760 * 20 17 16 43 43 H 1.09002 * 109.46965 * 157.25757 * 20 17 16 44 44 H 1.08996 * 109.47162 * 277.24950 * 20 17 16 45 45 H 1.07997 * 119.98486 * 180.02562 * 21 4 3 46 46 H 1.08001 * 120.01180 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3332 2.5029 0.0000 6 7 4.3240 3.0727 1.3540 7 6 5.4837 3.9498 1.5639 8 6 5.8348 3.9762 3.0292 9 1 5.2548 3.3990 3.7339 10 6 6.8971 4.7367 3.4699 11 7 7.6043 5.4385 2.6114 12 14 7.3328 4.7689 5.2860 13 1 6.3907 3.9003 6.0366 14 1 8.7197 4.2719 5.4713 15 1 7.2336 6.1608 5.7942 16 6 3.0683 3.7888 1.6153 17 6 2.7678 4.7334 0.4499 18 6 1.9357 3.9970 -0.6020 19 6 1.9854 5.9439 0.9631 20 6 4.0818 5.2039 -0.1771 21 6 4.2733 0.0006 -0.0005 22 6 3.5843 -1.1971 -0.0005 23 6 2.1995 -1.1988 0.0005 24 9 1.5249 -2.3692 0.0063 25 1 -0.3632 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1322 -0.0004 29 1 5.3624 2.3291 -0.3141 30 1 3.8551 3.1981 -0.6900 31 1 6.3325 3.5724 0.9936 32 1 5.2413 4.9586 1.2301 33 1 8.3514 5.9738 2.9215 34 1 2.2553 3.0703 1.7195 35 1 3.1637 4.3656 2.5353 36 1 1.0587 3.5561 -0.1280 37 1 1.6178 4.7005 -1.3715 38 1 2.5378 3.2098 -1.0557 39 1 2.5782 6.4685 1.7125 40 1 1.7717 6.6171 0.1330 41 1 1.0493 5.6088 1.4099 42 1 4.8001 4.3842 -0.1734 43 1 3.9007 5.5236 -1.2033 44 1 4.4805 6.0391 0.3986 45 1 5.3532 0.0021 -0.0005 46 1 4.1256 -2.1317 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353422900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:41 Heat of formation + Delta-G solvation = 17.773740 kcal Electronic energy + Delta-G solvation = -24880.864853 eV Core-core repulsion = 21493.540931 eV Total energy + Delta-G solvation = -3387.323922 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.83464 -41.66443 -39.51430 -35.63949 -34.58136 -33.61478 -32.46214 -29.40390 -28.82413 -28.40048 -27.75733 -27.00295 -25.32804 -23.37684 -22.46750 -21.31089 -19.80614 -18.53169 -18.40022 -17.57325 -16.90563 -16.61901 -16.53341 -16.37827 -15.67010 -15.56757 -15.16910 -14.72482 -14.46227 -14.33522 -14.16594 -14.15160 -14.04345 -13.40597 -13.15077 -13.04687 -12.90048 -12.83486 -12.65286 -12.49251 -12.42824 -12.28961 -12.16091 -12.11562 -11.93333 -11.70201 -11.49122 -11.39696 -11.08768 -10.93808 -10.45945 -9.76166 -9.38255 -8.65696 -8.09326 -6.18564 0.24632 0.35638 1.39125 1.41129 1.53246 2.42826 2.64010 3.19155 3.36600 3.56537 3.78153 3.88431 3.93698 3.96689 3.99186 4.10668 4.24553 4.39149 4.49490 4.60011 4.62788 4.69009 4.73637 4.75204 4.79202 4.84292 4.90663 4.96342 5.00710 5.10747 5.16260 5.20124 5.22490 5.26079 5.29936 5.34178 5.35782 5.43880 5.50099 5.54535 5.61065 5.73400 5.77458 6.04500 6.21799 6.54699 6.74797 6.97144 7.48787 8.96564 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.004896 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.535414 B = 5717.727760 C = 6749.916544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.072 4.072 5 C 0.058 3.942 6 N -0.536 5.536 7 C 0.176 3.824 8 C -0.512 4.512 9 H 0.049 0.951 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.955 3.045 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.279 1.279 16 C 0.070 3.930 17 C -0.097 4.097 18 C -0.160 4.160 19 C -0.132 4.132 20 C -0.166 4.166 21 C -0.099 4.099 22 C -0.152 4.152 23 C 0.066 3.934 24 F -0.147 7.147 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.166 0.834 29 H 0.057 0.943 30 H 0.098 0.902 31 H -0.007 1.007 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.130 0.870 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.501 -6.681 -8.747 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C -0.130 4.130 4 C -0.073 4.073 5 C -0.069 4.069 6 N -0.259 5.259 7 C 0.051 3.949 8 C -0.551 4.551 9 H 0.067 0.933 10 C -0.192 4.192 11 N -0.574 5.574 12 Si 0.781 3.219 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.205 1.205 16 C -0.059 4.059 17 C -0.098 4.098 18 C -0.215 4.215 19 C -0.189 4.189 20 C -0.223 4.223 21 C -0.118 4.118 22 C -0.170 4.170 23 C 0.047 3.953 24 F -0.126 7.126 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.183 0.817 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.011 0.989 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.148 0.852 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.330 -7.007 -8.404 18.029 hybrid contribution 1.000 0.521 0.657 1.305 sum -13.329 -6.486 -7.747 16.726 Atomic orbital electron populations 1.20776 0.88532 1.04105 1.03391 1.20218 0.98241 0.91436 1.02421 1.21857 0.93594 0.98960 0.98637 1.20051 0.94236 0.94955 0.98094 1.21895 0.99336 0.93585 0.92066 1.62090 1.03077 1.36303 1.24382 1.20303 0.86863 0.92600 0.95129 1.21597 1.13156 1.25841 0.94527 0.93302 1.25699 0.96364 0.95491 1.01661 1.70059 1.20581 1.31153 1.35567 0.85545 0.77895 0.77760 0.80677 1.19470 1.20750 1.20502 1.22300 0.91762 0.94773 0.97037 1.21130 0.95405 0.96658 0.96654 1.22720 0.99583 1.00872 0.98361 1.21815 0.99730 0.96692 1.00692 1.22832 0.98052 1.01593 0.99786 1.21054 1.00515 0.91335 0.98859 1.21222 0.92336 0.99952 1.03509 1.17735 0.90360 0.81100 1.06106 1.91428 1.80501 1.46380 1.94292 0.90340 0.89170 0.91137 0.81723 0.92426 0.88460 0.98909 0.94923 0.93021 0.90537 0.93208 0.90426 0.91117 0.90643 0.94674 0.91729 0.91246 0.90913 0.92094 0.94570 0.85244 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.83 71.24 0.70 -1.30 16 2 C -0.12 -2.99 5.89 -19.82 -0.12 -3.10 16 3 C -0.11 -2.89 7.33 22.26 0.16 -2.73 16 4 C -0.07 -2.16 5.31 -19.86 -0.11 -2.27 16 5 C 0.06 1.93 3.71 85.56 0.32 2.25 16 6 N -0.54 -21.78 4.46 -905.36 -4.04 -25.82 16 7 C 0.18 8.85 3.41 85.56 0.29 9.14 16 8 C -0.51 -28.90 8.94 25.60 0.23 -28.67 16 9 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 10 C 0.01 0.30 5.46 84.65 0.46 0.76 16 11 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 12 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 C 0.07 2.44 4.85 86.30 0.42 2.86 16 17 C -0.10 -2.76 0.77 -52.18 -0.04 -2.80 16 18 C -0.16 -3.38 6.39 71.98 0.46 -2.92 16 19 C -0.13 -3.41 8.19 71.98 0.59 -2.82 16 20 C -0.17 -5.60 6.20 71.98 0.45 -5.15 16 21 C -0.10 -2.88 9.66 22.26 0.22 -2.66 16 22 C -0.15 -4.01 10.03 22.31 0.22 -3.78 16 23 C 0.07 1.76 7.24 22.37 0.16 1.92 16 24 F -0.15 -3.87 16.48 44.97 0.74 -3.13 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.24 8.09 -2.39 -0.02 1.23 16 27 H 0.07 1.21 7.64 -2.39 -0.02 1.19 16 28 H 0.17 3.64 2.67 -2.91 -0.01 3.63 16 29 H 0.06 2.08 7.22 -2.39 -0.02 2.06 16 30 H 0.10 2.90 2.35 -2.39 -0.01 2.89 16 31 H -0.01 -0.39 7.37 -2.39 -0.02 -0.41 16 32 H 0.03 1.70 3.84 -2.39 -0.01 1.69 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.08 2.37 6.11 -2.39 -0.01 2.36 16 35 H 0.05 2.02 7.36 -2.38 -0.02 2.00 16 36 H 0.08 1.38 6.41 -2.39 -0.02 1.36 16 37 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.08 1.69 3.59 -2.39 -0.01 1.68 16 39 H 0.03 1.07 8.09 -2.38 -0.02 1.05 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 2.74 2.69 -2.39 -0.01 2.74 16 43 H 0.06 1.72 7.94 -2.39 -0.02 1.70 16 44 H 0.04 1.43 6.75 -2.39 -0.02 1.41 16 45 H 0.13 3.66 8.02 -2.91 -0.02 3.63 16 46 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -63.15 341.19 4.42 -58.74 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.99 Total: 19.50 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 4.42 Total: -41.28 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -3.76 Total: -80.73 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.74 Total: -3.13 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.15 4.42 -58.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353422900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.510 kcal (2) G-P(sol) polarization free energy of solvation -63.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds