Wall clock time and date at job start Tue Mar 31 2020 07:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38222 * 120.01209 * 2 1 4 4 C 1.38220 * 120.01938 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.97022 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46904 * 20.00048 * 5 4 3 7 7 C 1.52999 * 109.47150 * 260.00134 * 5 4 3 8 8 N 1.46903 * 109.46830 * 139.99833 * 5 4 3 9 9 C 1.46898 * 110.99673 * 204.99929 * 8 5 4 10 10 C 1.53006 * 109.47006 * 180.02562 * 9 8 5 11 11 C 1.52999 * 109.46626 * 299.99747 * 10 9 8 12 12 C 1.52997 * 109.47164 * 60.00045 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 10 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47011 * 90.00204 * 18 16 14 20 20 H 1.48498 * 109.47112 * 210.00472 * 18 16 14 21 21 H 1.48499 * 109.47134 * 330.00583 * 18 16 14 22 22 C 1.38265 * 120.05803 * 0.25570 * 4 3 2 23 23 C 1.38184 * 120.02261 * 359.48580 * 22 4 3 24 24 C 1.38440 * 120.00948 * 179.97438 * 2 1 3 25 25 F 1.35095 * 120.02627 * 0.02562 * 24 2 1 26 26 H 1.08994 * 109.47159 * 90.00052 * 1 2 3 27 27 H 1.09005 * 109.47236 * 210.00374 * 1 2 3 28 28 H 1.09005 * 109.46829 * 329.99734 * 1 2 3 29 29 H 1.07996 * 119.98803 * 359.95866 * 3 2 1 30 30 H 1.08994 * 109.47047 * 59.99952 * 7 5 4 31 31 H 1.08996 * 109.46853 * 180.02562 * 7 5 4 32 32 H 1.08998 * 109.46692 * 300.00039 * 7 5 4 33 33 H 1.00897 * 110.99542 * 81.05070 * 8 5 4 34 34 H 1.09001 * 109.47392 * 60.00807 * 9 8 5 35 35 H 1.09001 * 109.47520 * 300.00529 * 9 8 5 36 36 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 37 37 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 38 38 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 39 39 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 40 40 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 42 42 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 43 43 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 44 44 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 45 45 H 1.07998 * 119.98997 * 179.74785 * 22 4 3 46 46 H 1.07998 * 120.01349 * 180.27497 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3333 2.5027 0.0000 6 1 3.6780 3.3000 0.3507 7 6 4.8055 2.8185 -1.4207 8 7 5.4967 2.3976 0.8908 9 6 5.9010 3.7199 1.3867 10 6 7.1130 3.5701 2.3085 11 6 6.7460 2.6720 3.4915 12 6 8.2707 2.9412 1.5306 13 6 7.5338 4.9472 2.8256 14 6 8.7272 4.7995 3.7339 15 1 9.1441 3.8214 3.9232 16 6 9.2875 5.9134 4.3226 17 7 8.7801 7.1046 4.0918 18 14 10.7672 5.7305 5.4480 19 1 12.0136 5.8331 4.6474 20 1 10.7464 6.8060 6.4718 21 1 10.7178 4.4069 6.1195 22 6 4.2733 0.0005 -0.0043 23 6 3.5843 -1.1973 0.0011 24 6 2.1994 -1.1988 0.0005 25 9 1.5247 -2.3692 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6584 2.1322 -0.0007 30 1 3.9423 2.8965 -2.0815 31 1 5.3503 3.7626 -1.4209 32 1 5.4608 2.0212 -1.7713 33 1 6.2648 1.9342 0.4291 34 1 5.0762 4.1681 1.9407 35 1 6.1628 4.3597 0.5440 36 1 6.4459 1.6908 3.1235 37 1 7.6093 2.5656 4.1485 38 1 5.9213 3.1199 4.0457 39 1 8.5322 3.5811 0.6878 40 1 9.1340 2.8341 2.1875 41 1 7.9707 1.9601 1.1626 42 1 7.7951 5.5874 1.9830 43 1 6.7089 5.3948 3.3799 44 1 9.1740 7.8881 4.5062 45 1 5.3533 0.0019 -0.0080 46 1 4.1255 -2.1319 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358507585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:29 Heat of formation + Delta-G solvation = -49.504620 kcal Electronic energy + Delta-G solvation = -23459.554850 eV Core-core repulsion = 20069.313519 eV Total energy + Delta-G solvation = -3390.241331 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.99289 -39.69248 -37.74449 -35.41137 -32.88405 -32.38793 -30.79339 -28.78476 -27.14193 -26.88126 -26.33095 -25.24548 -23.50381 -22.63554 -22.18655 -20.07761 -18.01289 -17.62063 -16.66402 -16.25825 -15.83175 -15.71576 -14.86813 -14.80083 -14.33548 -14.27323 -13.67504 -13.59147 -13.43612 -13.27137 -13.12676 -12.94854 -12.89885 -12.60193 -12.29561 -12.00510 -11.85294 -11.68960 -11.49958 -11.16544 -10.99363 -10.96515 -10.84962 -10.77573 -10.49700 -10.26350 -10.12409 -9.69585 -9.05365 -9.01069 -8.84602 -8.55007 -8.31882 -8.11653 -5.96568 -3.96554 1.05747 1.12248 3.33001 3.39823 3.42730 3.44757 4.15688 4.28008 4.48928 4.57782 4.63346 4.73216 5.04152 5.05873 5.19679 5.24663 5.34289 5.35322 5.39366 5.55067 5.59469 5.65166 5.72469 5.80408 5.87732 5.92061 5.97351 6.05278 6.08749 6.17308 6.27528 6.31909 6.45393 6.49772 6.66059 6.78557 6.80810 6.82994 7.20437 7.21437 7.26513 7.37752 7.62561 7.70291 7.85156 8.03807 8.48226 9.08869 9.66287 11.15118 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.029486 B = 0.002832 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.372499 B = 9885.742761 C =10099.603578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.063 4.063 5 C 0.119 3.881 6 H 0.086 0.914 7 C -0.177 4.177 8 N -0.678 5.678 9 C 0.070 3.930 10 C -0.058 4.058 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.034 3.966 14 C -0.507 4.507 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.074 4.074 23 C -0.150 4.150 24 C 0.084 3.916 25 F -0.144 7.144 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.339 0.661 34 H 0.066 0.934 35 H 0.025 0.975 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.131 0.869 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 -13.443 -11.528 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.121 4.121 3 C -0.109 4.109 4 C -0.064 4.064 5 C 0.009 3.991 6 H 0.105 0.895 7 C -0.236 4.236 8 N -0.310 5.310 9 C -0.058 4.058 10 C -0.058 4.058 11 C -0.173 4.173 12 C -0.186 4.186 13 C -0.003 4.003 14 C -0.545 4.545 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.093 4.093 23 C -0.169 4.169 24 C 0.065 3.935 25 F -0.122 7.122 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.149 0.851 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.808 -13.443 -10.914 22.147 hybrid contribution 1.184 0.248 -0.120 1.216 sum -12.624 -13.195 -11.034 21.336 Atomic orbital electron populations 1.20706 0.90406 1.03250 1.02561 1.19852 0.96795 0.91923 1.03554 1.20768 0.93431 0.96971 0.99775 1.19910 0.93097 0.95271 0.98157 1.20452 0.93511 0.93666 0.91499 0.89544 1.22485 1.01767 1.02141 0.97234 1.60685 1.08479 1.22080 1.39727 1.22149 0.98516 0.87908 0.97223 1.20628 0.91972 0.99087 0.94160 1.21596 1.00521 0.97843 0.97357 1.21768 0.99408 0.97721 0.99695 1.19117 0.96186 0.89350 0.95686 1.21240 1.13157 0.92937 1.27154 0.92302 1.25017 0.97225 0.95479 0.96878 1.69965 1.41186 0.98046 1.44581 0.86669 0.83338 0.77730 0.80722 1.20841 1.21377 1.19903 1.20781 1.00327 0.90676 0.97500 1.21119 0.92126 0.99825 1.03805 1.17527 0.90092 0.80779 1.05074 1.91453 1.80486 1.46179 1.94120 0.91039 0.91358 0.90969 0.85285 0.92166 0.91879 0.92347 0.84116 0.91516 0.95649 0.93886 0.92741 0.94207 0.94099 0.91725 0.94889 0.96950 0.96697 0.93173 0.85097 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.84 36.01 0.35 -0.57 16 2 C -0.12 -1.26 5.89 -104.55 -0.62 -1.88 16 3 C -0.09 -0.94 9.32 -39.59 -0.37 -1.31 16 4 C -0.06 -0.70 4.95 -104.61 -0.52 -1.22 16 5 C 0.12 1.34 2.79 -68.86 -0.19 1.15 16 6 H 0.09 1.00 7.66 -51.93 -0.40 0.60 16 7 C -0.18 -1.77 9.14 37.16 0.34 -1.43 16 8 N -0.68 -9.04 4.92 -107.94 -0.53 -9.57 16 9 C 0.07 1.15 4.45 -3.82 -0.02 1.13 16 10 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 11 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 12 C -0.13 -2.30 7.89 37.16 0.29 -2.00 16 13 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 14 C -0.51 -13.71 7.65 -34.44 -0.26 -13.98 16 15 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.07 -0.81 9.32 -39.59 -0.37 -1.18 16 23 C -0.15 -1.60 10.03 -39.51 -0.40 -2.00 16 24 C 0.08 0.96 7.24 -39.42 -0.29 0.67 16 25 F -0.14 -1.69 16.48 2.25 0.04 -1.65 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.56 7.64 -51.93 -0.40 0.16 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.13 1.10 8.03 -52.49 -0.42 0.68 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 32 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 33 H 0.34 4.29 5.86 -39.29 -0.23 4.06 16 34 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 35 H 0.03 0.41 7.44 -51.93 -0.39 0.03 16 36 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 37 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.13 1.30 7.25 -52.49 -0.38 0.92 16 46 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -29.22 366.12 -8.98 -38.20 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.68 Total: 0.55 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -2.04 Total: -23.56 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.21 Total: -35.53 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.22 -8.98 -38.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358507585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.301 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds