Wall clock time and date at job start Tue Mar 31 2020 07:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38222 * 120.01209 * 2 1 4 4 C 1.38220 * 120.01938 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.97022 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46904 * 20.00048 * 5 4 3 7 7 C 1.52999 * 109.47150 * 260.00134 * 5 4 3 8 8 N 1.46903 * 109.46830 * 139.99833 * 5 4 3 9 9 C 1.46898 * 110.99673 * 204.99929 * 8 5 4 10 10 C 1.53006 * 109.47006 * 180.02562 * 9 8 5 11 11 C 1.52999 * 109.46626 * 299.99747 * 10 9 8 12 12 C 1.52997 * 109.47164 * 60.00045 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 10 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47011 * 90.00204 * 18 16 14 20 20 H 1.48498 * 109.47112 * 210.00472 * 18 16 14 21 21 H 1.48499 * 109.47134 * 330.00583 * 18 16 14 22 22 C 1.38265 * 120.05803 * 0.25570 * 4 3 2 23 23 C 1.38184 * 120.02261 * 359.48580 * 22 4 3 24 24 C 1.38440 * 120.00948 * 179.97438 * 2 1 3 25 25 F 1.35095 * 120.02627 * 0.02562 * 24 2 1 26 26 H 1.08994 * 109.47159 * 90.00052 * 1 2 3 27 27 H 1.09005 * 109.47236 * 210.00374 * 1 2 3 28 28 H 1.09005 * 109.46829 * 329.99734 * 1 2 3 29 29 H 1.07996 * 119.98803 * 359.95866 * 3 2 1 30 30 H 1.08994 * 109.47047 * 59.99952 * 7 5 4 31 31 H 1.08996 * 109.46853 * 180.02562 * 7 5 4 32 32 H 1.08998 * 109.46692 * 300.00039 * 7 5 4 33 33 H 1.00897 * 110.99542 * 81.05070 * 8 5 4 34 34 H 1.09001 * 109.47392 * 60.00807 * 9 8 5 35 35 H 1.09001 * 109.47520 * 300.00529 * 9 8 5 36 36 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 37 37 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 38 38 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 39 39 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 40 40 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 42 42 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 43 43 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 44 44 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 45 45 H 1.07998 * 119.98997 * 179.74785 * 22 4 3 46 46 H 1.07998 * 120.01349 * 180.27497 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3333 2.5027 0.0000 6 1 3.6780 3.3000 0.3507 7 6 4.8055 2.8185 -1.4207 8 7 5.4967 2.3976 0.8908 9 6 5.9010 3.7199 1.3867 10 6 7.1130 3.5701 2.3085 11 6 6.7460 2.6720 3.4915 12 6 8.2707 2.9412 1.5306 13 6 7.5338 4.9472 2.8256 14 6 8.7272 4.7995 3.7339 15 1 9.1441 3.8214 3.9232 16 6 9.2875 5.9134 4.3226 17 7 8.7801 7.1046 4.0918 18 14 10.7672 5.7305 5.4480 19 1 12.0136 5.8331 4.6474 20 1 10.7464 6.8060 6.4718 21 1 10.7178 4.4069 6.1195 22 6 4.2733 0.0005 -0.0043 23 6 3.5843 -1.1973 0.0011 24 6 2.1994 -1.1988 0.0005 25 9 1.5247 -2.3692 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6584 2.1322 -0.0007 30 1 3.9423 2.8965 -2.0815 31 1 5.3503 3.7626 -1.4209 32 1 5.4608 2.0212 -1.7713 33 1 6.2648 1.9342 0.4291 34 1 5.0762 4.1681 1.9407 35 1 6.1628 4.3597 0.5440 36 1 6.4459 1.6908 3.1235 37 1 7.6093 2.5656 4.1485 38 1 5.9213 3.1199 4.0457 39 1 8.5322 3.5811 0.6878 40 1 9.1340 2.8341 2.1875 41 1 7.9707 1.9601 1.1626 42 1 7.7951 5.5874 1.9830 43 1 6.7089 5.3948 3.3799 44 1 9.1740 7.8881 4.5062 45 1 5.3533 0.0019 -0.0080 46 1 4.1255 -2.1319 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358507585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:29 Heat of formation + Delta-G solvation = -63.518602 kcal Electronic energy + Delta-G solvation = -23460.162542 eV Core-core repulsion = 20069.313519 eV Total energy + Delta-G solvation = -3390.849023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.85054 -40.55394 -39.08349 -36.65050 -34.48391 -33.54473 -31.90389 -29.76693 -28.74085 -27.88873 -27.84368 -26.64347 -24.81410 -23.68370 -23.40399 -20.95746 -19.55008 -18.46846 -18.30858 -17.50747 -16.90420 -16.62522 -16.52555 -15.90871 -15.66778 -15.25880 -14.84498 -14.66135 -14.49567 -14.33359 -14.20406 -14.01234 -13.90178 -13.83103 -13.63240 -13.32408 -13.06490 -12.78096 -12.74902 -12.58778 -12.46583 -12.28586 -12.22958 -12.11771 -12.02105 -11.80910 -11.73708 -11.35492 -10.83591 -10.71195 -10.48931 -9.80519 -9.41336 -9.20349 -8.12897 -6.19360 0.22784 0.34112 1.41315 1.41974 1.52435 2.44526 2.63324 3.21248 3.27870 3.35881 3.78743 3.83435 3.92144 4.13650 4.22474 4.28336 4.32276 4.41483 4.43839 4.47034 4.63076 4.74893 4.75014 4.79202 4.85898 4.93368 4.97120 5.00746 5.10951 5.11807 5.19520 5.24784 5.25137 5.28860 5.30760 5.41053 5.54897 5.57167 5.59640 5.61801 5.70853 5.90756 5.95331 6.00754 6.15903 6.39522 6.57177 6.96186 7.47882 8.99397 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.029486 B = 0.002832 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.372499 B = 9885.742761 C =10099.603578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.125 4.125 3 C -0.095 4.095 4 C -0.070 4.070 5 C 0.122 3.878 6 H 0.084 0.916 7 C -0.172 4.172 8 N -0.675 5.675 9 C 0.085 3.915 10 C -0.055 4.055 11 C -0.106 4.106 12 C -0.122 4.122 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.065 0.935 16 C -0.004 4.004 17 N -0.938 5.938 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.081 4.081 23 C -0.154 4.154 24 C 0.065 3.935 25 F -0.150 7.150 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.346 0.654 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.068 0.932 42 H -0.015 1.015 43 H -0.017 1.017 44 H 0.259 0.741 45 H 0.140 0.860 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.508 -15.012 -12.125 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.071 4.071 5 C 0.012 3.988 6 H 0.102 0.898 7 C -0.231 4.231 8 N -0.308 5.308 9 C -0.044 4.044 10 C -0.055 4.055 11 C -0.164 4.164 12 C -0.179 4.179 13 C 0.003 3.997 14 C -0.551 4.551 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.579 5.579 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.188 1.188 22 C -0.100 4.100 23 C -0.172 4.172 24 C 0.046 3.954 25 F -0.129 7.129 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.163 0.837 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.003 0.997 43 H 0.001 0.999 44 H 0.068 0.932 45 H 0.158 0.842 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.885 -15.036 -11.521 23.486 hybrid contribution 1.143 0.723 0.036 1.352 sum -12.742 -14.313 -11.485 22.341 Atomic orbital electron populations 1.20763 0.88989 1.03733 1.03436 1.20125 0.98005 0.91649 1.02801 1.20972 0.93349 0.97646 0.99407 1.19926 0.93458 0.95020 0.98654 1.20439 0.92544 0.93984 0.91801 0.89823 1.22420 1.02280 1.01871 0.96506 1.60588 1.09252 1.20018 1.40894 1.21814 0.96673 0.89503 0.96447 1.20487 0.93986 0.95871 0.95153 1.21496 0.99262 0.98857 0.96745 1.21682 0.97873 0.99444 0.98924 1.19001 0.94538 0.92093 0.94097 1.21635 1.13497 0.93099 1.26877 0.91674 1.25901 1.00296 0.95233 0.98651 1.70104 1.42929 0.98865 1.46042 0.85609 0.79793 0.77958 0.78690 1.20062 1.21348 1.18791 1.20913 1.00842 0.90591 0.97618 1.21308 0.92060 1.00509 1.03347 1.17792 0.90608 0.80965 1.06010 1.91434 1.80631 1.46523 1.94268 0.89914 0.91660 0.89710 0.83697 0.90955 0.92747 0.91625 0.83367 0.92588 0.95855 0.91385 0.94536 0.95338 0.94311 0.93664 0.91291 0.99652 0.99856 0.93209 0.84199 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.84 71.24 0.70 -0.93 16 2 C -0.12 -2.40 5.89 -19.82 -0.12 -2.52 16 3 C -0.10 -1.77 9.32 22.26 0.21 -1.56 16 4 C -0.07 -1.39 4.95 -19.86 -0.10 -1.49 16 5 C 0.12 2.51 2.79 44.17 0.12 2.64 16 6 H 0.08 1.79 7.66 -2.39 -0.02 1.77 16 7 C -0.17 -3.06 9.14 71.98 0.66 -2.40 16 8 N -0.68 -16.61 4.92 -495.42 -2.44 -19.04 16 9 C 0.08 2.70 4.45 86.31 0.38 3.08 16 10 C -0.05 -2.08 0.60 -52.18 -0.03 -2.11 16 11 C -0.11 -3.97 8.06 71.98 0.58 -3.39 16 12 C -0.12 -4.18 7.89 71.98 0.57 -3.61 16 13 C 0.04 2.05 4.04 29.85 0.12 2.17 16 14 C -0.51 -28.13 7.65 25.60 0.20 -27.94 16 15 H 0.07 3.43 5.68 -2.91 -0.02 3.41 16 16 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 17 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 18 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 22 C -0.08 -1.58 9.32 22.26 0.21 -1.37 16 23 C -0.15 -3.01 10.03 22.31 0.22 -2.79 16 24 C 0.07 1.39 7.24 22.38 0.16 1.56 16 25 F -0.15 -3.37 16.48 44.97 0.74 -2.63 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.98 7.64 -2.38 -0.02 0.97 16 28 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 29 H 0.15 2.15 8.03 -2.91 -0.02 2.12 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 32 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.35 7.73 5.86 -89.70 -0.53 7.21 16 34 H 0.06 1.90 8.06 -2.39 -0.02 1.88 16 35 H 0.02 0.75 7.44 -2.39 -0.02 0.73 16 36 H 0.07 2.19 7.60 -2.39 -0.02 2.17 16 37 H 0.04 1.47 6.62 -2.39 -0.02 1.45 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 41 H 0.07 1.86 6.57 -2.39 -0.02 1.84 16 42 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 44 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.14 2.39 7.25 -2.91 -0.02 2.37 16 46 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -63.35 366.12 5.39 -57.96 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.43 Total: 14.66 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 4.35 Total: -40.45 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.15 Total: -75.86 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.74 Total: -2.63 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -63.35 5.39 -57.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358507585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.558 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds