Wall clock time and date at job start Tue Mar 31 2020 06:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99904 * 2 1 4 4 C 1.52996 * 110.01422 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47402 * 66.95292 * 4 3 2 6 6 C 1.46902 * 110.99815 * 286.63106 * 5 4 3 7 7 C 1.50694 * 109.47065 * 170.34163 * 6 5 4 8 8 H 1.08000 * 120.00288 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00120 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00462 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99582 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47322 * 90.00021 * 11 9 7 13 13 H 1.48497 * 109.47048 * 210.00055 * 11 9 7 14 14 H 1.48502 * 109.47495 * 329.99958 * 11 9 7 15 15 C 1.46898 * 111.00371 * 162.67751 * 5 4 3 16 16 C 1.50701 * 109.46755 * 287.19507 * 15 5 4 17 17 C 1.34517 * 125.79188 * 94.39930 * 16 15 5 18 18 C 1.41386 * 106.84230 * 179.97438 * 17 16 15 19 19 C 1.34512 * 106.83713 * 359.97438 * 18 17 16 20 20 O 1.34297 * 108.42489 * 0.02562 * 19 18 17 21 21 C 1.54265 * 110.03150 * 301.38900 * 3 2 1 22 22 C 1.54967 * 104.16257 * 95.75660 * 21 3 2 23 23 C 1.54891 * 102.77524 * 37.88586 * 22 21 3 24 24 C 1.53868 * 110.03510 * 58.60790 * 3 2 1 25 25 H 1.09008 * 109.47261 * 300.00306 * 1 2 3 26 26 H 1.09001 * 109.47467 * 59.99951 * 1 2 3 27 27 H 1.08994 * 109.47641 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47598 * 306.95097 * 4 3 2 29 29 H 1.09002 * 109.47056 * 186.94708 * 4 3 2 30 30 H 1.08999 * 109.46985 * 290.34579 * 6 5 4 31 31 H 1.09003 * 109.46970 * 50.34282 * 6 5 4 32 32 H 0.97000 * 120.00558 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.46977 * 167.19756 * 15 5 4 34 34 H 1.08998 * 109.46836 * 47.18980 * 15 5 4 35 35 H 1.07999 * 126.57901 * 0.02562 * 17 16 15 36 36 H 1.07996 * 126.57662 * 180.02562 * 18 17 16 37 37 H 1.08005 * 125.78764 * 180.02562 * 19 18 17 38 38 H 1.08994 * 110.48895 * 214.40400 * 21 3 2 39 39 H 1.09007 * 110.48647 * 337.04926 * 21 3 2 40 40 H 1.09000 * 110.71870 * 279.57710 * 22 21 3 41 41 H 1.09002 * 110.76842 * 156.22444 * 22 21 3 42 42 H 1.08992 * 110.48621 * 203.40708 * 23 22 21 43 43 H 1.09004 * 110.48024 * 80.76665 * 23 22 21 44 44 H 1.08999 * 110.03453 * 359.95110 * 24 3 2 45 45 H 1.09004 * 110.03458 * 121.38300 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5365 1.1992 -0.0006 5 7 3.9868 0.6245 -1.2754 6 6 3.6916 -0.8132 -1.3382 7 6 3.9461 -1.3177 -2.7352 8 1 4.2921 -0.6383 -3.5000 9 6 3.7362 -2.6466 -3.0372 10 7 3.9577 -3.0868 -4.2564 11 14 3.1357 -3.8213 -1.7148 12 1 1.6509 -3.8446 -1.7104 13 1 3.6513 -5.1857 -1.9935 14 1 3.6275 -3.3676 -0.3890 15 6 5.4176 0.8780 -1.4909 16 6 5.6248 2.3319 -1.8288 17 6 5.9341 3.3064 -0.9546 18 6 6.0338 4.5058 -1.6966 19 6 5.7801 4.1923 -2.9798 20 8 5.5329 2.8744 -3.0540 21 6 1.5355 2.0952 -1.2372 22 6 0.3351 2.9268 -0.7186 23 6 0.7908 3.3355 0.7043 24 6 1.5367 2.0933 1.2340 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.8564 0.5575 0.8204 29 1 3.9699 2.1916 0.1237 30 1 4.3329 -1.3468 -0.6367 31 1 2.6471 -0.9814 -1.0757 32 1 3.8104 -4.0217 -4.4688 33 1 5.7764 0.2591 -2.3134 34 1 5.9706 0.6334 -0.5840 35 1 6.0792 3.1940 0.1097 36 1 6.2694 5.4854 -1.3077 37 1 5.7760 4.8834 -3.8098 38 1 2.3272 2.7522 -1.5973 39 1 1.2161 1.4135 -2.0255 40 1 -0.5668 2.3163 -0.6749 41 1 0.1770 3.8073 -1.3414 42 1 -0.0720 3.5587 1.3317 43 1 1.4623 4.1929 0.6582 44 1 0.8629 1.4803 1.8325 45 1 2.3943 2.4000 1.8329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361497093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:52 Heat of formation + Delta-G solvation = -19.636479 kcal Electronic energy + Delta-G solvation = -25406.056772 eV Core-core repulsion = 22004.737831 eV Total energy + Delta-G solvation = -3401.318941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.15688 -39.73641 -36.47421 -34.93607 -32.70362 -32.34688 -30.58964 -29.55572 -28.57504 -27.16250 -25.91583 -25.11637 -23.05470 -21.35095 -20.83441 -20.56597 -19.77492 -19.20579 -17.08877 -16.77713 -16.25700 -15.73754 -15.53236 -15.08886 -14.65801 -14.42366 -14.17054 -13.86210 -13.43459 -13.35594 -12.96943 -12.56275 -12.53727 -12.38049 -12.29235 -12.16883 -11.70650 -11.54896 -11.20754 -11.04555 -10.96270 -10.78660 -10.74457 -10.47566 -10.34503 -10.22664 -10.15980 -9.72214 -9.58216 -9.20178 -8.92122 -8.44687 -8.09893 -7.39116 -5.96157 -3.91663 2.12285 2.91437 3.37141 3.43042 3.44264 3.49467 4.15476 4.51741 4.57923 4.80948 4.93711 5.02460 5.14919 5.31414 5.36406 5.38809 5.44860 5.51928 5.52576 5.69074 5.73142 5.75671 5.79488 5.82626 5.92076 5.94273 6.00444 6.05606 6.09731 6.10996 6.18498 6.25443 6.30642 6.40152 6.54506 6.58617 6.76319 6.84002 7.04866 7.16067 7.57521 7.66508 7.83159 7.94669 8.08183 8.73854 9.13021 9.66653 11.16946 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.007692 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.759642 B = 3639.270569 C = 5523.843641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.361 6.361 3 C 0.123 3.877 4 C 0.065 3.935 5 N -0.515 5.515 6 C 0.151 3.849 7 C -0.507 4.507 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.903 5.903 11 Si 0.874 3.126 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.125 3.875 16 C 0.033 3.967 17 C -0.233 4.233 18 C -0.216 4.216 19 C -0.054 4.054 20 O -0.161 6.161 21 C -0.125 4.125 22 C -0.137 4.137 23 C -0.120 4.120 24 C -0.151 4.151 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.080 0.920 30 H -0.017 1.017 31 H 0.069 0.931 32 H 0.262 0.738 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.195 0.805 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 14.272 9.941 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.280 6.280 3 C 0.083 3.917 4 C -0.064 4.064 5 N -0.239 5.239 6 C 0.026 3.974 7 C -0.545 4.545 8 H 0.097 0.903 9 C -0.132 4.132 10 N -0.543 5.543 11 Si 0.702 3.298 12 H -0.202 1.202 13 H -0.217 1.217 14 H -0.191 1.191 15 C -0.002 4.002 16 C -0.019 4.019 17 C -0.253 4.253 18 C -0.236 4.236 19 C -0.122 4.122 20 O -0.056 6.056 21 C -0.163 4.163 22 C -0.174 4.174 23 C -0.158 4.158 24 C -0.189 4.189 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.001 0.999 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.212 0.788 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.264 13.974 9.188 17.040 hybrid contribution -0.033 -0.612 1.438 1.563 sum -3.296 13.362 10.626 17.387 Atomic orbital electron populations 1.22834 0.82897 1.01941 0.99680 1.88125 1.18492 1.26900 1.94434 1.22106 0.93158 0.83158 0.93241 1.22208 0.92388 0.99731 0.92038 1.61872 1.13521 1.18402 1.30082 1.20585 0.98285 0.81286 0.97221 1.21099 1.44346 0.94447 0.94632 0.90274 1.24849 0.95285 0.98002 0.95072 1.69903 1.49989 1.15473 1.18925 0.86871 0.79569 0.80322 0.83064 1.20212 1.21662 1.19128 1.20554 0.90919 0.86901 1.01846 1.22772 1.00888 0.96563 0.81636 1.21494 1.11176 0.92448 1.00195 1.21680 1.08787 0.99391 0.93696 1.23922 1.06255 0.82998 0.99063 1.84124 1.68187 1.21256 1.32013 1.22715 0.97033 0.98727 0.97778 1.22773 0.98723 0.99890 0.96033 1.22310 0.99381 0.97542 0.96568 1.22801 1.00591 0.97153 0.98380 0.94588 0.93535 0.90478 0.94939 0.90210 0.99890 0.91369 0.92865 0.87135 0.92710 0.84270 0.84220 0.78830 0.90425 0.90117 0.91589 0.91846 0.92155 0.91669 0.90988 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.42 101.05 0.95 1.29 16 2 O -0.36 -6.62 7.32 -35.23 -0.26 -6.88 16 3 C 0.12 1.99 0.92 -89.51 -0.08 1.90 16 4 C 0.06 1.12 3.79 -3.82 -0.01 1.11 16 5 N -0.51 -10.61 3.83 -237.52 -0.91 -11.52 16 6 C 0.15 3.68 3.57 -4.98 -0.02 3.66 16 7 C -0.51 -14.40 8.82 -34.44 -0.30 -14.71 16 8 H 0.08 2.46 7.49 -52.49 -0.39 2.07 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 11 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 15 C 0.13 2.41 5.35 -4.98 -0.03 2.38 16 16 C 0.03 0.58 6.35 -35.62 -0.23 0.36 16 17 C -0.23 -3.47 9.51 -39.70 -0.38 -3.85 16 18 C -0.22 -2.89 10.91 -39.70 -0.43 -3.32 16 19 C -0.05 -0.75 12.09 29.42 0.36 -0.40 16 20 O -0.16 -2.91 10.65 5.72 0.06 -2.85 16 21 C -0.12 -1.99 4.87 -25.03 -0.12 -2.12 16 22 C -0.14 -1.71 6.38 -24.70 -0.16 -1.87 16 23 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 24 C -0.15 -1.94 5.70 -25.61 -0.15 -2.08 16 25 H 0.04 0.45 6.30 -51.92 -0.33 0.12 16 26 H 0.05 0.66 5.45 -51.93 -0.28 0.38 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 29 H 0.08 1.24 6.16 -51.93 -0.32 0.92 16 30 H -0.02 -0.41 7.19 -51.93 -0.37 -0.79 16 31 H 0.07 1.71 4.38 -51.93 -0.23 1.48 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.11 2.41 6.56 -51.93 -0.34 2.07 16 34 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 35 H 0.14 1.82 8.04 -52.49 -0.42 1.40 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.19 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.08 1.32 7.85 -51.93 -0.41 0.92 16 39 H 0.08 1.50 7.57 -51.92 -0.39 1.10 16 40 H 0.07 0.79 6.06 -51.93 -0.31 0.47 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.90 6.31 -51.93 -0.33 0.57 16 45 H 0.07 0.82 7.67 -51.93 -0.40 0.42 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -31.79 344.06 -7.75 -39.55 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.07 Total: 3.53 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -0.87 Total: -17.26 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.14 Total: -38.70 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.20 Total: -9.73 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.79 -7.75 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361497093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.909 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds