Wall clock time and date at job start Tue Mar 31 2020 06:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99904 * 2 1 4 4 C 1.52996 * 110.01422 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47402 * 66.95292 * 4 3 2 6 6 C 1.46902 * 110.99815 * 286.63106 * 5 4 3 7 7 C 1.50694 * 109.47065 * 170.34163 * 6 5 4 8 8 H 1.08000 * 120.00288 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00120 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00462 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99582 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47322 * 90.00021 * 11 9 7 13 13 H 1.48497 * 109.47048 * 210.00055 * 11 9 7 14 14 H 1.48502 * 109.47495 * 329.99958 * 11 9 7 15 15 C 1.46898 * 111.00371 * 162.67751 * 5 4 3 16 16 C 1.50701 * 109.46755 * 287.19507 * 15 5 4 17 17 C 1.34517 * 125.79188 * 94.39930 * 16 15 5 18 18 C 1.41386 * 106.84230 * 179.97438 * 17 16 15 19 19 C 1.34512 * 106.83713 * 359.97438 * 18 17 16 20 20 O 1.34297 * 108.42489 * 0.02562 * 19 18 17 21 21 C 1.54265 * 110.03150 * 301.38900 * 3 2 1 22 22 C 1.54967 * 104.16257 * 95.75660 * 21 3 2 23 23 C 1.54891 * 102.77524 * 37.88586 * 22 21 3 24 24 C 1.53868 * 110.03510 * 58.60790 * 3 2 1 25 25 H 1.09008 * 109.47261 * 300.00306 * 1 2 3 26 26 H 1.09001 * 109.47467 * 59.99951 * 1 2 3 27 27 H 1.08994 * 109.47641 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47598 * 306.95097 * 4 3 2 29 29 H 1.09002 * 109.47056 * 186.94708 * 4 3 2 30 30 H 1.08999 * 109.46985 * 290.34579 * 6 5 4 31 31 H 1.09003 * 109.46970 * 50.34282 * 6 5 4 32 32 H 0.97000 * 120.00558 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.46977 * 167.19756 * 15 5 4 34 34 H 1.08998 * 109.46836 * 47.18980 * 15 5 4 35 35 H 1.07999 * 126.57901 * 0.02562 * 17 16 15 36 36 H 1.07996 * 126.57662 * 180.02562 * 18 17 16 37 37 H 1.08005 * 125.78764 * 180.02562 * 19 18 17 38 38 H 1.08994 * 110.48895 * 214.40400 * 21 3 2 39 39 H 1.09007 * 110.48647 * 337.04926 * 21 3 2 40 40 H 1.09000 * 110.71870 * 279.57710 * 22 21 3 41 41 H 1.09002 * 110.76842 * 156.22444 * 22 21 3 42 42 H 1.08992 * 110.48621 * 203.40708 * 23 22 21 43 43 H 1.09004 * 110.48024 * 80.76665 * 23 22 21 44 44 H 1.08999 * 110.03453 * 359.95110 * 24 3 2 45 45 H 1.09004 * 110.03458 * 121.38300 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5365 1.1992 -0.0006 5 7 3.9868 0.6245 -1.2754 6 6 3.6916 -0.8132 -1.3382 7 6 3.9461 -1.3177 -2.7352 8 1 4.2921 -0.6383 -3.5000 9 6 3.7362 -2.6466 -3.0372 10 7 3.9577 -3.0868 -4.2564 11 14 3.1357 -3.8213 -1.7148 12 1 1.6509 -3.8446 -1.7104 13 1 3.6513 -5.1857 -1.9935 14 1 3.6275 -3.3676 -0.3890 15 6 5.4176 0.8780 -1.4909 16 6 5.6248 2.3319 -1.8288 17 6 5.9341 3.3064 -0.9546 18 6 6.0338 4.5058 -1.6966 19 6 5.7801 4.1923 -2.9798 20 8 5.5329 2.8744 -3.0540 21 6 1.5355 2.0952 -1.2372 22 6 0.3351 2.9268 -0.7186 23 6 0.7908 3.3355 0.7043 24 6 1.5367 2.0933 1.2340 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.8564 0.5575 0.8204 29 1 3.9699 2.1916 0.1237 30 1 4.3329 -1.3468 -0.6367 31 1 2.6471 -0.9814 -1.0757 32 1 3.8104 -4.0217 -4.4688 33 1 5.7764 0.2591 -2.3134 34 1 5.9706 0.6334 -0.5840 35 1 6.0792 3.1940 0.1097 36 1 6.2694 5.4854 -1.3077 37 1 5.7760 4.8834 -3.8098 38 1 2.3272 2.7522 -1.5973 39 1 1.2161 1.4135 -2.0255 40 1 -0.5668 2.3163 -0.6749 41 1 0.1770 3.8073 -1.3414 42 1 -0.0720 3.5587 1.3317 43 1 1.4623 4.1929 0.6582 44 1 0.8629 1.4803 1.8325 45 1 2.3943 2.4000 1.8329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361497093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:51 Heat of formation + Delta-G solvation = -40.182046 kcal Electronic energy + Delta-G solvation = -25406.947694 eV Core-core repulsion = 22004.737831 eV Total energy + Delta-G solvation = -3402.209863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.38138 -40.96529 -38.05141 -36.10180 -34.68024 -33.78940 -31.87026 -31.13594 -29.69565 -28.81725 -27.11242 -26.44157 -24.73270 -22.53413 -22.43007 -21.67808 -21.07856 -20.43731 -19.02113 -18.12549 -17.60705 -17.14403 -16.77788 -16.42136 -16.31293 -15.94657 -15.40095 -15.08792 -15.05607 -14.73768 -14.38559 -14.27692 -13.77789 -13.64125 -13.59022 -13.45122 -13.32781 -12.88861 -12.65452 -12.48721 -12.39119 -12.01764 -11.98673 -11.89547 -11.85257 -11.76510 -11.65924 -11.35083 -11.05414 -10.75545 -10.71578 -10.19086 -9.33933 -9.00804 -8.25089 -6.25339 0.90036 1.34633 1.35704 1.48062 1.79423 2.26688 2.36768 2.93046 3.10947 3.21795 3.73558 3.78343 3.91085 3.99692 4.20868 4.23429 4.26679 4.36639 4.44399 4.46932 4.55535 4.59354 4.66790 4.68151 4.70833 4.78214 4.83301 4.88694 4.99341 5.01955 5.06280 5.07205 5.09540 5.20472 5.28621 5.31229 5.34221 5.47658 5.50254 5.72664 5.75182 6.00727 6.29500 6.40393 6.52061 6.68229 6.80001 7.36777 8.91857 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.007692 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.759642 B = 3639.270569 C = 5523.843641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.395 6.395 3 C 0.116 3.884 4 C 0.066 3.934 5 N -0.527 5.527 6 C 0.167 3.833 7 C -0.508 4.508 8 H 0.033 0.967 9 C 0.010 3.990 10 N -0.951 5.951 11 Si 0.944 3.056 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.254 1.254 15 C 0.130 3.870 16 C -0.007 4.007 17 C -0.213 4.213 18 C -0.214 4.214 19 C -0.056 4.056 20 O -0.200 6.200 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.111 4.111 24 C -0.144 4.144 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.099 0.901 30 H -0.024 1.024 31 H 0.068 0.932 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.230 0.770 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 16.551 13.085 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.315 6.315 3 C 0.077 3.923 4 C -0.062 4.062 5 N -0.251 5.251 6 C 0.041 3.959 7 C -0.546 4.546 8 H 0.051 0.949 9 C -0.187 4.187 10 N -0.592 5.592 11 Si 0.769 3.231 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.178 1.178 15 C 0.003 3.997 16 C -0.057 4.057 17 C -0.233 4.233 18 C -0.232 4.232 19 C -0.123 4.123 20 O -0.096 6.096 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.149 4.149 24 C -0.182 4.182 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.117 0.883 30 H -0.006 1.006 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.179 0.821 36 H 0.193 0.807 37 H 0.246 0.754 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.224 16.281 12.350 20.867 hybrid contribution 0.331 -1.188 0.341 1.280 sum -3.893 15.092 12.691 20.099 Atomic orbital electron populations 1.22974 0.81236 1.02525 1.00911 1.88018 1.20456 1.28341 1.94719 1.22265 0.92196 0.82939 0.94899 1.22331 0.93693 1.00212 0.89942 1.61759 1.14704 1.15948 1.32704 1.20258 0.97936 0.83727 0.94001 1.21306 1.43457 0.94045 0.95821 0.94900 1.25741 0.95555 0.99945 0.97441 1.70057 1.51718 1.16121 1.21305 0.85752 0.79347 0.77790 0.80256 1.19187 1.20926 1.17846 1.20354 0.90247 0.88219 1.00890 1.22470 1.04689 0.96083 0.82473 1.21798 1.08435 0.92143 1.00888 1.22079 1.07881 1.00250 0.93020 1.24790 1.04777 0.81737 1.00987 1.84086 1.69276 1.23466 1.32781 1.22590 0.98175 0.98235 0.96986 1.22739 0.97209 0.99644 0.97157 1.22294 1.00239 0.96900 0.95454 1.22745 1.01411 0.97308 0.96717 0.91745 0.93785 0.90370 0.94996 0.88276 1.00603 0.91437 0.92643 0.91494 0.91044 0.82073 0.80673 0.75377 0.92081 0.93976 0.90954 0.90883 0.89689 0.90839 0.90211 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.42 113.37 1.07 1.61 16 2 O -0.40 -14.23 7.32 -148.98 -1.09 -15.32 16 3 C 0.12 3.62 0.92 -10.07 -0.01 3.61 16 4 C 0.07 2.24 3.79 86.30 0.33 2.56 16 5 N -0.53 -22.54 3.83 -905.37 -3.47 -26.01 16 6 C 0.17 8.42 3.57 85.55 0.31 8.72 16 7 C -0.51 -30.65 8.82 25.60 0.23 -30.42 16 8 H 0.03 2.23 7.49 -2.91 -0.02 2.21 16 9 C 0.01 0.60 5.47 84.66 0.46 1.06 16 10 N -0.95 -61.54 13.96 21.45 0.30 -61.24 16 11 Si 0.94 46.64 27.47 68.60 1.88 48.53 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 14 H -0.25 -11.98 6.54 99.48 0.65 -11.33 16 15 C 0.13 5.28 5.35 85.56 0.46 5.73 16 16 C -0.01 -0.23 6.35 24.83 0.16 -0.07 16 17 C -0.21 -5.91 9.51 22.19 0.21 -5.69 16 18 C -0.21 -5.05 10.91 22.19 0.24 -4.81 16 19 C -0.06 -1.47 12.09 66.97 0.81 -0.66 16 20 O -0.20 -7.43 10.65 -2.43 -0.03 -7.45 16 21 C -0.12 -3.89 4.87 31.70 0.15 -3.73 16 22 C -0.13 -2.96 6.38 31.91 0.20 -2.76 16 23 C -0.11 -2.06 6.83 31.67 0.22 -1.84 16 24 C -0.14 -3.19 5.70 31.32 0.18 -3.01 16 25 H 0.06 1.40 6.30 -2.38 -0.02 1.39 16 26 H 0.04 1.23 5.45 -2.39 -0.01 1.21 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.03 1.08 8.03 -2.39 -0.02 1.06 16 29 H 0.10 2.92 6.16 -2.39 -0.01 2.90 16 30 H -0.02 -1.21 7.19 -2.39 -0.02 -1.23 16 31 H 0.07 3.46 4.38 -2.39 -0.01 3.45 16 32 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 33 H 0.07 3.23 6.56 -2.39 -0.02 3.21 16 34 H 0.07 2.55 8.04 -2.39 -0.02 2.53 16 35 H 0.16 3.67 8.04 -2.91 -0.02 3.64 16 36 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.23 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.06 2.11 7.85 -2.39 -0.02 2.09 16 39 H 0.04 1.63 7.57 -2.38 -0.02 1.62 16 40 H 0.07 1.56 6.06 -2.39 -0.01 1.54 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.08 1.67 6.31 -2.39 -0.02 1.66 16 45 H 0.08 1.62 7.67 -2.38 -0.02 1.60 16 Total: -1.00 -74.00 344.06 3.52 -70.48 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.92 Total: 20.73 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 5.01 Total: -29.72 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -3.17 Total: -87.25 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -1.12 Total: -22.77 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal Total: -74.00 3.52 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361497093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.296 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds