Wall clock time and date at job start Tue Mar 31 2020 06:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99737 * 2 1 4 4 C 1.53003 * 109.47034 * 184.71711 * 3 2 1 5 5 N 1.46898 * 109.47199 * 69.26075 * 4 3 2 6 6 C 1.46900 * 111.00162 * 286.22723 * 5 4 3 7 7 C 1.50701 * 109.46881 * 302.59527 * 6 5 4 8 8 H 1.07999 * 120.00172 * 4.46755 * 7 6 5 9 9 C 1.37884 * 120.00048 * 184.47214 * 7 6 5 10 10 N 1.31512 * 119.99985 * 354.84458 * 9 7 6 11 11 Si 1.86799 * 119.99956 * 174.85053 * 9 7 6 12 12 H 1.48493 * 109.47449 * 94.99182 * 11 9 7 13 13 H 1.48499 * 109.46878 * 214.99302 * 11 9 7 14 14 H 1.48504 * 109.47229 * 334.98568 * 11 9 7 15 15 C 1.46894 * 111.00197 * 162.27070 * 5 4 3 16 16 C 1.53002 * 109.47467 * 190.00244 * 15 5 4 17 17 H 1.08998 * 109.47010 * 305.00046 * 16 15 5 18 18 O 1.42906 * 109.47155 * 64.99748 * 16 15 5 19 19 C 1.42904 * 113.99875 * 270.00507 * 18 16 15 20 20 C 1.50694 * 109.47471 * 184.99687 * 16 15 5 21 21 C 1.38229 * 120.00370 * 279.72599 * 20 16 15 22 22 C 1.38235 * 120.00362 * 179.78866 * 21 20 16 23 23 C 1.38236 * 119.99822 * 0.43958 * 22 21 20 24 24 C 1.38239 * 119.99792 * 359.81568 * 23 22 21 25 25 C 1.38228 * 120.00323 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47385 * 64.93528 * 1 2 3 27 27 H 1.09004 * 109.46808 * 184.93404 * 1 2 3 28 28 H 1.08996 * 109.47017 * 304.93090 * 1 2 3 29 29 H 1.09003 * 109.47124 * 64.72496 * 3 2 1 30 30 H 1.08996 * 109.47416 * 304.71740 * 3 2 1 31 31 H 1.09008 * 109.46945 * 309.26342 * 4 3 2 32 32 H 1.09000 * 109.47271 * 189.26471 * 4 3 2 33 33 H 1.09000 * 109.47405 * 62.59424 * 6 5 4 34 34 H 1.09003 * 109.47186 * 182.59909 * 6 5 4 35 35 H 0.96993 * 120.00357 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47606 * 70.00369 * 15 5 4 37 37 H 1.09002 * 109.47249 * 309.99796 * 15 5 4 38 38 H 1.09003 * 109.46986 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47231 * 59.99597 * 19 18 16 40 40 H 1.09002 * 109.46820 * 299.99478 * 19 18 16 41 41 H 1.08005 * 119.99992 * 359.97438 * 21 20 16 42 42 H 1.08000 * 120.00113 * 180.28077 * 22 21 20 43 43 H 1.07998 * 119.99897 * 179.83601 * 23 22 21 44 44 H 1.07997 * 119.99458 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00660 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1867 -0.1186 5 7 3.8812 0.7033 -1.4609 6 6 3.5715 -0.7256 -1.6033 7 6 4.3070 -1.5068 -0.5450 8 1 4.8832 -0.9878 0.2067 9 6 4.2443 -2.8842 -0.5365 10 7 3.4629 -3.5122 -1.3877 11 14 5.2692 -3.8582 0.6843 12 1 4.4497 -4.1669 1.8835 13 1 5.7195 -5.1247 0.0531 14 1 6.4534 -3.0574 1.0866 15 6 5.2938 0.9686 -1.7640 16 6 5.5601 0.6841 -3.2436 17 1 5.2486 -0.3333 -3.4797 18 8 4.8214 1.6070 -4.0466 19 6 3.5115 1.1547 -4.3957 20 6 7.0321 0.8375 -3.5276 21 6 7.5727 2.0961 -3.7134 22 6 8.9238 2.2371 -3.9697 23 6 9.7326 1.1188 -4.0491 24 6 9.1909 -0.1401 -3.8686 25 6 7.8408 -0.2809 -3.6080 26 1 -0.3634 0.4353 -0.9309 27 1 -0.3633 -1.0239 0.0884 28 1 -0.3633 0.5884 0.8425 29 1 1.7571 1.8159 0.9293 30 1 1.6233 1.8755 -0.8447 31 1 3.8999 0.4838 0.6284 32 1 3.9857 2.1636 0.0459 33 1 2.4985 -0.8782 -1.4875 34 1 3.8829 -1.0683 -2.5900 35 1 3.4185 -4.4811 -1.3815 36 1 5.9242 0.3244 -1.1511 37 1 5.5220 2.0123 -1.5480 38 1 3.0165 1.9107 -5.0051 39 1 2.9327 0.9827 -3.4882 40 1 3.5866 0.2254 -4.9603 41 1 6.9401 2.9695 -3.6554 42 1 9.3470 3.2207 -4.1103 43 1 10.7876 1.2288 -4.2520 44 1 9.8228 -1.0138 -3.9311 45 1 7.4176 -1.2644 -3.4665 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379167290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:33 Heat of formation + Delta-G solvation = -52.005732 kcal Electronic energy + Delta-G solvation = -24799.025812 eV Core-core repulsion = 21396.303235 eV Total energy + Delta-G solvation = -3402.722577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.35546 -37.93193 -37.06194 -35.47100 -32.40863 -31.92664 -30.62572 -29.46776 -27.72525 -26.38549 -25.77000 -24.86311 -23.34953 -22.27788 -22.15185 -20.42617 -19.47030 -16.83336 -16.48797 -16.04987 -15.88703 -15.51483 -15.15460 -14.85053 -14.47831 -14.14752 -14.08732 -14.01003 -13.61397 -13.37292 -13.09929 -12.56287 -12.41711 -12.25874 -12.03369 -11.62337 -11.36013 -11.10836 -11.01099 -10.94974 -10.83559 -10.77892 -10.63581 -10.50531 -10.19070 -10.10733 -9.78434 -9.36110 -9.05098 -8.87994 -8.65007 -8.43901 -8.21617 -7.08377 -5.92797 -3.96849 1.59226 1.67425 3.31180 3.38515 3.41351 4.01305 4.36194 4.48127 4.50743 4.91782 5.17459 5.18300 5.32316 5.38756 5.51469 5.63950 5.75185 5.78411 5.80994 5.85472 5.90675 5.93301 5.95121 6.03545 6.06669 6.14779 6.18484 6.24355 6.29055 6.34024 6.48808 6.60444 6.63433 6.73760 6.74512 6.80696 6.92946 7.25491 7.31368 7.72282 7.82382 7.89780 8.04598 8.13402 8.35987 8.42268 9.10270 9.66264 11.13086 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.006000 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.204255 B = 4665.240259 C = 6111.621731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.073 3.927 4 C 0.056 3.944 5 N -0.537 5.537 6 C 0.177 3.823 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.067 3.933 10 N -0.890 5.890 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.049 3.951 16 C 0.134 3.866 17 H 0.080 0.920 18 O -0.383 6.383 19 C 0.031 3.969 20 C -0.072 4.072 21 C -0.094 4.094 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.105 4.105 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.258 0.742 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 10.199 -3.337 11.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C -0.005 4.005 4 C -0.073 4.073 5 N -0.261 5.261 6 C 0.052 3.948 7 C -0.571 4.571 8 H 0.071 0.929 9 C -0.134 4.134 10 N -0.529 5.529 11 Si 0.708 3.292 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.080 4.080 16 C 0.076 3.924 17 H 0.098 0.902 18 O -0.302 6.302 19 C -0.065 4.065 20 C -0.073 4.073 21 C -0.112 4.112 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.123 4.123 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.166 10.287 -3.792 11.411 hybrid contribution 0.722 -1.228 1.415 2.008 sum 3.888 9.059 -2.377 10.141 Atomic orbital electron populations 1.22629 0.83328 1.01977 0.98578 1.88320 1.17510 1.26600 1.94755 1.22464 0.94605 0.85207 0.98186 1.22001 0.93242 0.99054 0.92959 1.62607 1.17025 1.21636 1.24798 1.20053 0.98803 0.80218 0.95708 1.21607 1.30247 0.91694 1.13565 0.92947 1.24846 0.95269 0.97787 0.95547 1.69946 1.37695 1.08302 1.37001 0.86786 0.80833 0.79866 0.81745 1.20895 1.21313 1.20102 1.22380 0.91462 0.99595 0.94555 1.20936 0.86656 0.94024 0.90774 0.90231 1.87717 1.27632 1.44222 1.70662 1.22868 0.84641 0.98133 1.00888 1.19879 0.94989 0.93440 0.98988 1.21006 0.94605 0.97336 0.98289 1.21101 0.93994 0.98338 1.01358 1.21080 0.99395 0.92870 1.01202 1.21070 0.95113 0.97290 1.00776 1.21143 0.93724 0.98746 0.98715 0.94917 0.90252 0.95420 0.94667 0.93661 0.92124 0.92005 0.92202 0.95940 0.93178 0.93145 0.92411 0.91416 0.90546 0.95260 0.85736 0.86508 0.86635 0.86300 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.23 7.94 -35.23 -0.28 -7.51 16 3 C 0.07 1.27 6.21 37.16 0.23 1.50 16 4 C 0.06 1.06 5.33 -3.82 -0.02 1.04 16 5 N -0.54 -11.01 2.89 -236.07 -0.68 -11.69 16 6 C 0.18 4.36 3.88 -4.98 -0.02 4.34 16 7 C -0.53 -14.28 7.35 -34.44 -0.25 -14.53 16 8 H 0.05 1.42 5.96 -52.49 -0.31 1.11 16 9 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 10 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 11 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.05 0.95 4.45 -3.83 -0.02 0.93 16 16 C 0.13 2.51 2.40 -27.89 -0.07 2.44 16 17 H 0.08 1.68 5.72 -51.93 -0.30 1.38 16 18 O -0.38 -6.98 9.66 -35.23 -0.34 -7.32 16 19 C 0.03 0.53 10.61 101.05 1.07 1.60 16 20 C -0.07 -1.23 4.97 -104.63 -0.52 -1.75 16 21 C -0.09 -1.43 9.36 -39.59 -0.37 -1.80 16 22 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 23 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 24 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 25 C -0.11 -1.72 9.67 -39.58 -0.38 -2.11 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.32 5.87 -51.92 -0.30 1.01 16 32 H 0.06 1.02 7.77 -51.93 -0.40 0.62 16 33 H 0.06 1.62 5.69 -51.93 -0.30 1.32 16 34 H 0.02 0.60 6.06 -51.93 -0.31 0.28 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.05 1.09 6.84 -51.93 -0.36 0.73 16 37 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.42 5.70 -51.93 -0.30 1.13 16 40 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 41 H 0.12 1.83 7.77 -52.48 -0.41 1.42 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.13 2.11 8.04 -52.49 -0.42 1.69 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -29.91 358.14 -7.89 -37.80 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.18 Total: 3.17 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.52 Total: -11.23 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.06 Total: -36.83 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.62 Total: -14.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.91 -7.89 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379167290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.206 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds