Wall clock time and date at job start Tue Mar 31 2020 06:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99737 * 2 1 4 4 C 1.53003 * 109.47034 * 184.71711 * 3 2 1 5 5 N 1.46898 * 109.47199 * 69.26075 * 4 3 2 6 6 C 1.46900 * 111.00162 * 286.22723 * 5 4 3 7 7 C 1.50701 * 109.46881 * 302.59527 * 6 5 4 8 8 H 1.07999 * 120.00172 * 4.46755 * 7 6 5 9 9 C 1.37884 * 120.00048 * 184.47214 * 7 6 5 10 10 N 1.31512 * 119.99985 * 354.84458 * 9 7 6 11 11 Si 1.86799 * 119.99956 * 174.85053 * 9 7 6 12 12 H 1.48493 * 109.47449 * 94.99182 * 11 9 7 13 13 H 1.48499 * 109.46878 * 214.99302 * 11 9 7 14 14 H 1.48504 * 109.47229 * 334.98568 * 11 9 7 15 15 C 1.46894 * 111.00197 * 162.27070 * 5 4 3 16 16 C 1.53002 * 109.47467 * 190.00244 * 15 5 4 17 17 H 1.08998 * 109.47010 * 305.00046 * 16 15 5 18 18 O 1.42906 * 109.47155 * 64.99748 * 16 15 5 19 19 C 1.42904 * 113.99875 * 270.00507 * 18 16 15 20 20 C 1.50694 * 109.47471 * 184.99687 * 16 15 5 21 21 C 1.38229 * 120.00370 * 279.72599 * 20 16 15 22 22 C 1.38235 * 120.00362 * 179.78866 * 21 20 16 23 23 C 1.38236 * 119.99822 * 0.43958 * 22 21 20 24 24 C 1.38239 * 119.99792 * 359.81568 * 23 22 21 25 25 C 1.38228 * 120.00323 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47385 * 64.93528 * 1 2 3 27 27 H 1.09004 * 109.46808 * 184.93404 * 1 2 3 28 28 H 1.08996 * 109.47017 * 304.93090 * 1 2 3 29 29 H 1.09003 * 109.47124 * 64.72496 * 3 2 1 30 30 H 1.08996 * 109.47416 * 304.71740 * 3 2 1 31 31 H 1.09008 * 109.46945 * 309.26342 * 4 3 2 32 32 H 1.09000 * 109.47271 * 189.26471 * 4 3 2 33 33 H 1.09000 * 109.47405 * 62.59424 * 6 5 4 34 34 H 1.09003 * 109.47186 * 182.59909 * 6 5 4 35 35 H 0.96993 * 120.00357 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47606 * 70.00369 * 15 5 4 37 37 H 1.09002 * 109.47249 * 309.99796 * 15 5 4 38 38 H 1.09003 * 109.46986 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47231 * 59.99597 * 19 18 16 40 40 H 1.09002 * 109.46820 * 299.99478 * 19 18 16 41 41 H 1.08005 * 119.99992 * 359.97438 * 21 20 16 42 42 H 1.08000 * 120.00113 * 180.28077 * 22 21 20 43 43 H 1.07998 * 119.99897 * 179.83601 * 23 22 21 44 44 H 1.07997 * 119.99458 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00660 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1867 -0.1186 5 7 3.8812 0.7033 -1.4609 6 6 3.5715 -0.7256 -1.6033 7 6 4.3070 -1.5068 -0.5450 8 1 4.8832 -0.9878 0.2067 9 6 4.2443 -2.8842 -0.5365 10 7 3.4629 -3.5122 -1.3877 11 14 5.2692 -3.8582 0.6843 12 1 4.4497 -4.1669 1.8835 13 1 5.7195 -5.1247 0.0531 14 1 6.4534 -3.0574 1.0866 15 6 5.2938 0.9686 -1.7640 16 6 5.5601 0.6841 -3.2436 17 1 5.2486 -0.3333 -3.4797 18 8 4.8214 1.6070 -4.0466 19 6 3.5115 1.1547 -4.3957 20 6 7.0321 0.8375 -3.5276 21 6 7.5727 2.0961 -3.7134 22 6 8.9238 2.2371 -3.9697 23 6 9.7326 1.1188 -4.0491 24 6 9.1909 -0.1401 -3.8686 25 6 7.8408 -0.2809 -3.6080 26 1 -0.3634 0.4353 -0.9309 27 1 -0.3633 -1.0239 0.0884 28 1 -0.3633 0.5884 0.8425 29 1 1.7571 1.8159 0.9293 30 1 1.6233 1.8755 -0.8447 31 1 3.8999 0.4838 0.6284 32 1 3.9857 2.1636 0.0459 33 1 2.4985 -0.8782 -1.4875 34 1 3.8829 -1.0683 -2.5900 35 1 3.4185 -4.4811 -1.3815 36 1 5.9242 0.3244 -1.1511 37 1 5.5220 2.0123 -1.5480 38 1 3.0165 1.9107 -5.0051 39 1 2.9327 0.9827 -3.4882 40 1 3.5866 0.2254 -4.9603 41 1 6.9401 2.9695 -3.6554 42 1 9.3470 3.2207 -4.1103 43 1 10.7876 1.2288 -4.2520 44 1 9.8228 -1.0138 -3.9311 45 1 7.4176 -1.2644 -3.4665 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379167290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:33 Heat of formation + Delta-G solvation = -69.726788 kcal Electronic energy + Delta-G solvation = -24799.794254 eV Core-core repulsion = 21396.303235 eV Total energy + Delta-G solvation = -3403.491020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67507 -39.36846 -38.46020 -37.08682 -34.47813 -33.24808 -31.74839 -30.92654 -29.45082 -27.96743 -27.15411 -26.40262 -25.15540 -23.61273 -23.34082 -21.79205 -21.20485 -18.53130 -17.99845 -17.55075 -17.35030 -16.90573 -16.70657 -16.39865 -16.15605 -15.48301 -15.43803 -15.35113 -15.13005 -14.91746 -14.41958 -14.20410 -13.79218 -13.65989 -13.41209 -13.15140 -12.98466 -12.90916 -12.62056 -12.49214 -12.38596 -12.24594 -12.17106 -11.98200 -11.83555 -11.75160 -11.52798 -11.24320 -10.56667 -10.51677 -10.16597 -9.77952 -9.60955 -8.88770 -8.05261 -6.17691 0.44156 0.54458 1.34031 1.35499 1.44560 2.41256 2.82179 2.98332 3.15116 3.21036 3.37869 3.99778 4.09628 4.21418 4.25089 4.32438 4.34841 4.36983 4.48649 4.53460 4.61199 4.62551 4.67606 4.70629 4.73283 4.78867 4.85413 4.91104 4.93915 5.01629 5.11184 5.13602 5.20614 5.22766 5.35669 5.59754 5.61968 5.64003 5.73058 5.96737 6.14710 6.18210 6.31727 6.40445 6.51732 6.64818 7.00804 7.48569 8.97516 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.006000 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.204255 B = 4665.240259 C = 6111.621731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.074 3.926 4 C 0.052 3.948 5 N -0.528 5.528 6 C 0.201 3.799 7 C -0.532 4.532 8 H 0.047 0.953 9 C 0.016 3.984 10 N -0.923 5.923 11 Si 0.939 3.061 12 H -0.280 1.280 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.056 3.944 16 C 0.144 3.856 17 H 0.043 0.957 18 O -0.383 6.383 19 C 0.033 3.967 20 C -0.096 4.096 21 C -0.102 4.102 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.131 4.131 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.038 0.962 34 H -0.004 1.004 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.020 0.980 41 H 0.129 0.871 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.140 0.860 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 12.353 -3.136 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.002 4.002 4 C -0.076 4.076 5 N -0.252 5.252 6 C 0.075 3.925 7 C -0.571 4.571 8 H 0.065 0.935 9 C -0.183 4.183 10 N -0.564 5.564 11 Si 0.766 3.234 12 H -0.206 1.206 13 H -0.208 1.208 14 H -0.196 1.196 15 C -0.073 4.073 16 C 0.086 3.914 17 H 0.061 0.939 18 O -0.302 6.302 19 C -0.063 4.063 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.149 4.149 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.014 0.986 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.147 0.853 42 H 0.169 0.831 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.774 12.458 -3.583 13.814 hybrid contribution 0.235 -1.823 1.326 2.266 sum 5.009 10.635 -2.257 11.970 Atomic orbital electron populations 1.22750 0.81284 1.02307 1.00331 1.88242 1.19998 1.28501 1.95119 1.22533 0.93121 0.84517 1.00067 1.22150 0.94991 0.99597 0.90863 1.62581 1.17723 1.18840 1.26016 1.19588 0.96912 0.82404 0.93628 1.21851 1.29665 0.92070 1.13527 0.93504 1.25574 0.96406 0.98930 0.97342 1.70061 1.39213 1.08469 1.38682 0.85834 0.79436 0.78538 0.79622 1.20555 1.20848 1.19584 1.22362 0.90162 0.99972 0.94800 1.20705 0.88259 0.92141 0.90323 0.93884 1.87707 1.28001 1.43986 1.70460 1.22896 0.84119 0.98945 1.00365 1.19811 0.93810 0.94775 1.01259 1.21114 0.95940 0.96343 0.98597 1.21500 0.92938 1.00175 0.99471 1.21520 1.01165 0.91883 0.99196 1.21349 0.94049 0.99104 0.99925 1.21144 0.95256 0.97793 1.00696 0.93826 0.90942 0.92660 0.91715 0.92668 0.95122 0.88907 0.94450 0.98560 0.93196 0.95750 0.90382 0.88197 0.92389 0.96157 0.85321 0.83095 0.82974 0.84263 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.17 16 2 O -0.40 -16.46 7.94 -148.98 -1.18 -17.65 16 3 C 0.07 2.52 6.21 71.98 0.45 2.97 16 4 C 0.05 1.97 5.33 86.30 0.46 2.43 16 5 N -0.53 -22.21 2.89 -900.79 -2.60 -24.81 16 6 C 0.20 10.38 3.88 85.56 0.33 10.71 16 7 C -0.53 -29.70 7.35 25.60 0.19 -29.51 16 8 H 0.05 2.63 5.96 -2.91 -0.02 2.61 16 9 C 0.02 0.92 5.45 84.66 0.46 1.38 16 10 N -0.92 -55.72 13.29 21.45 0.29 -55.43 16 11 Si 0.94 45.30 29.54 68.60 2.03 47.32 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 15 C 0.06 2.22 4.45 86.30 0.38 2.60 16 16 C 0.14 5.61 2.40 29.85 0.07 5.68 16 17 H 0.04 1.98 5.72 -2.39 -0.01 1.96 16 18 O -0.38 -14.03 9.66 -148.98 -1.44 -15.47 16 19 C 0.03 1.14 10.61 113.37 1.20 2.34 16 20 C -0.10 -3.32 4.97 -19.87 -0.10 -3.42 16 21 C -0.10 -2.94 9.36 22.27 0.21 -2.74 16 22 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 23 C -0.12 -2.66 10.05 22.27 0.22 -2.43 16 24 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 25 C -0.13 -4.40 9.67 22.27 0.22 -4.19 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.03 1.35 5.87 -2.38 -0.01 1.34 16 32 H 0.09 2.90 7.77 -2.39 -0.02 2.88 16 33 H 0.04 2.13 5.69 -2.39 -0.01 2.11 16 34 H 0.00 -0.20 6.06 -2.39 -0.01 -0.22 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.02 1.10 6.84 -2.39 -0.02 1.08 16 37 H 0.08 2.78 7.84 -2.39 -0.02 2.76 16 38 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.06 2.21 5.70 -2.39 -0.01 2.20 16 40 H 0.02 0.71 8.09 -2.39 -0.02 0.69 16 41 H 0.13 3.54 7.77 -2.91 -0.02 3.52 16 42 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 44 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 45 H 0.10 3.83 8.04 -2.91 -0.02 3.81 16 Total: -1.00 -67.19 358.14 3.84 -63.36 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.96 Total: 20.41 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 5.79 Total: -17.73 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -2.32 Total: -80.24 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -2.62 Total: -33.12 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.19 3.84 -63.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379167290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.371 kcal (2) G-P(sol) polarization free energy of solvation -67.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds