Wall clock time and date at job start Tue Mar 31 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00121 * 2 1 4 4 C 1.52990 * 109.47377 * 184.96119 * 3 2 1 5 5 N 1.46901 * 109.47316 * 63.95057 * 4 3 2 6 6 C 1.46899 * 111.00627 * 199.95375 * 5 4 3 7 7 C 1.50706 * 109.46889 * 66.04386 * 6 5 4 8 8 H 1.07998 * 119.99969 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00128 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99846 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00215 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47185 * 90.00360 * 11 9 7 13 13 H 1.48507 * 109.47294 * 209.99896 * 11 9 7 14 14 H 1.48497 * 109.47513 * 330.00125 * 11 9 7 15 15 C 1.46898 * 111.00168 * 75.99476 * 5 4 3 16 16 C 1.52993 * 109.47786 * 199.94062 * 15 5 4 17 17 O 1.42905 * 109.46901 * 63.88357 * 16 15 5 18 18 C 1.42901 * 114.00079 * 184.96794 * 17 16 15 19 19 C 1.50692 * 109.47364 * 184.96698 * 18 17 16 20 20 C 1.38235 * 120.00393 * 85.04268 * 19 18 17 21 21 C 1.38230 * 120.00076 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00256 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99628 * 0.27293 * 22 21 20 24 24 C 1.38237 * 120.00220 * 359.51652 * 23 22 21 25 25 H 1.08997 * 109.46617 * 184.96472 * 1 2 3 26 26 H 1.09001 * 109.47206 * 304.96780 * 1 2 3 27 27 H 1.08998 * 109.47101 * 64.96747 * 1 2 3 28 28 H 1.09008 * 109.46400 * 64.96463 * 3 2 1 29 29 H 1.08997 * 109.47216 * 304.96847 * 3 2 1 30 30 H 1.09002 * 109.47728 * 303.95265 * 4 3 2 31 31 H 1.08995 * 109.47330 * 183.94700 * 4 3 2 32 32 H 1.08997 * 109.47513 * 186.04041 * 6 5 4 33 33 H 1.09000 * 109.46915 * 306.04640 * 6 5 4 34 34 H 0.96995 * 119.99906 * 179.97438 * 10 9 7 35 35 H 1.09006 * 109.46732 * 79.93859 * 15 5 4 36 36 H 1.09002 * 109.47029 * 319.94731 * 15 5 4 37 37 H 1.09000 * 109.46990 * 303.88951 * 16 15 5 38 38 H 1.08996 * 109.47944 * 183.88664 * 16 15 5 39 39 H 1.09006 * 109.47084 * 64.96304 * 18 17 16 40 40 H 1.09004 * 109.46991 * 304.96736 * 18 17 16 41 41 H 1.07994 * 119.99410 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.99772 * 179.97438 * 21 20 19 43 43 H 1.07993 * 120.00079 * 179.97438 * 22 21 20 44 44 H 1.07995 * 119.99576 * 179.72547 * 23 22 21 45 45 H 1.07999 * 120.00028 * 180.27591 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5305 1.1869 -0.1247 5 7 3.8701 0.5867 -1.4218 6 6 5.2276 0.0257 -1.4032 7 6 5.2773 -1.1373 -0.4460 8 1 4.3892 -1.4305 0.0941 9 6 6.4566 -1.8269 -0.2597 10 7 7.5382 -1.4695 -0.9171 11 14 6.5185 -3.2679 0.9272 12 1 6.1896 -4.5212 0.2018 13 1 7.8819 -3.3743 1.5060 14 1 5.5332 -3.0539 2.0175 15 6 3.7187 1.5626 -2.5093 16 6 3.5870 0.8242 -3.8427 17 8 2.3913 0.0416 -3.8378 18 6 2.2284 -0.7781 -4.9969 19 6 0.8866 -1.4619 -4.9441 20 6 -0.2400 -0.8104 -5.4104 21 6 -1.4707 -1.4379 -5.3624 22 6 -1.5750 -2.7170 -4.8486 23 6 -0.4493 -3.3665 -4.3777 24 6 0.7823 -2.7407 -4.4296 25 1 -0.3632 -1.0238 0.0889 26 1 -0.3634 0.5890 0.8421 27 1 -0.3633 0.4348 -0.9311 28 1 1.7607 1.8142 0.9312 29 1 1.6200 1.8770 -0.8421 30 1 3.9130 0.5569 0.6783 31 1 3.9792 2.1777 -0.0543 32 1 5.4935 -0.3156 -2.4036 33 1 5.9329 0.7918 -1.0811 34 1 8.3679 -1.9544 -0.7858 35 1 4.5933 2.2125 -2.5386 36 1 2.8255 2.1632 -2.3368 37 1 4.4482 0.1709 -3.9828 38 1 3.5441 1.5482 -4.6564 39 1 3.0181 -1.5291 -5.0247 40 1 2.2853 -0.1579 -5.8915 41 1 -0.1584 0.1887 -5.8121 42 1 -2.3509 -0.9287 -5.7263 43 1 -2.5366 -3.2070 -4.8108 44 1 -0.5314 -4.3640 -3.9722 45 1 1.6625 -3.2499 -4.0658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381082809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:44 Heat of formation + Delta-G solvation = -57.638308 kcal Electronic energy + Delta-G solvation = -24089.165491 eV Core-core repulsion = 20686.198668 eV Total energy + Delta-G solvation = -3402.966824 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.21704 -37.94651 -37.10190 -35.78090 -32.53786 -31.88319 -30.80470 -29.86476 -28.58126 -26.28757 -25.67349 -25.04515 -22.48033 -22.42082 -21.96710 -21.15699 -19.58022 -16.84244 -16.48872 -16.20283 -15.78070 -15.66522 -15.43905 -15.21778 -14.82343 -14.49942 -14.28049 -13.94769 -13.51880 -13.31534 -13.20333 -12.93155 -12.61325 -12.08951 -11.96548 -11.86523 -11.71436 -11.50178 -11.14515 -11.05389 -10.90237 -10.78054 -10.71370 -10.57314 -10.33269 -10.02782 -9.63898 -9.12833 -9.06956 -8.97238 -8.81967 -8.71364 -8.34027 -7.04796 -5.94008 -3.92839 1.38005 1.50204 3.38988 3.44373 3.50304 3.74153 4.39700 4.42047 4.51902 4.91948 4.93650 4.99157 5.09464 5.22266 5.39116 5.41605 5.53831 5.55892 5.62760 5.64113 5.75434 5.76877 5.78877 5.83149 5.88743 5.95693 6.00934 6.06775 6.11519 6.14264 6.15524 6.32541 6.40080 6.52052 6.58168 6.75908 6.79015 7.07820 7.33578 7.39051 7.69573 7.81343 7.96358 8.21060 8.32420 8.68326 9.17740 9.70866 11.17153 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.004640 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.953490 B = 6032.960657 C = 6384.490895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.073 3.927 4 C 0.061 3.939 5 N -0.515 5.515 6 C 0.193 3.807 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.053 3.947 10 N -0.904 5.904 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.055 3.945 16 C 0.072 3.928 17 O -0.356 6.356 18 C 0.100 3.900 19 C -0.077 4.077 20 C -0.102 4.102 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.092 4.092 25 H 0.077 0.923 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.032 0.968 32 H 0.029 0.971 33 H -0.013 1.013 34 H 0.259 0.741 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.562 3.682 -7.633 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.277 6.277 3 C -0.004 4.004 4 C -0.068 4.068 5 N -0.240 5.240 6 C 0.068 3.932 7 C -0.535 4.535 8 H 0.086 0.914 9 C -0.147 4.147 10 N -0.544 5.544 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.074 4.074 16 C -0.005 4.005 17 O -0.274 6.274 18 C 0.023 3.977 19 C -0.078 4.078 20 C -0.120 4.120 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.110 4.110 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.005 0.995 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.708 3.087 -7.583 17.714 hybrid contribution 0.701 0.123 0.511 0.876 sum -15.007 3.210 -7.073 16.898 Atomic orbital electron populations 1.22604 0.83108 1.01739 0.98737 1.88122 1.17530 1.27078 1.94929 1.22563 0.95111 0.84905 0.97858 1.22009 0.92273 0.97593 0.94888 1.61977 1.30502 1.30790 1.00695 1.19766 0.81757 0.94033 0.97667 1.21236 0.95638 1.13279 1.23386 0.91397 1.24970 0.95636 0.97655 0.96450 1.69965 1.00625 1.41182 1.42653 0.86532 0.76902 0.82876 0.81316 1.20765 1.21543 1.19801 1.22067 0.99508 0.93760 0.92075 1.22524 0.87867 0.93503 0.96603 1.88094 1.41340 1.58167 1.39833 1.21241 0.93686 0.93713 0.89082 1.19673 0.94699 0.94411 0.98971 1.21015 0.92211 0.99276 0.99520 1.21066 0.97299 0.95454 1.00882 1.21122 0.98369 0.95286 0.99182 1.21144 0.92700 1.00153 1.00150 1.21188 0.98114 0.94724 0.96966 0.90479 0.95420 0.94789 0.94637 0.94328 0.88723 0.95020 0.95266 0.99514 0.93156 0.94349 0.91789 0.92647 0.94469 0.92532 0.93461 0.86319 0.86373 0.86422 0.86088 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -7.12 10.63 -35.23 -0.37 -7.50 16 3 C 0.07 1.28 6.11 37.15 0.23 1.51 16 4 C 0.06 1.23 5.18 -3.83 -0.02 1.21 16 5 N -0.52 -11.43 4.22 -236.08 -1.00 -12.43 16 6 C 0.19 5.06 4.55 -4.97 -0.02 5.04 16 7 C -0.50 -14.25 8.23 -34.44 -0.28 -14.54 16 8 H 0.07 2.00 7.32 -52.49 -0.38 1.62 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 11 Si 0.90 22.28 29.54 -169.99 -5.02 17.25 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 15 C 0.05 1.01 5.20 -3.83 -0.02 0.99 16 16 C 0.07 1.25 6.13 37.15 0.23 1.48 16 17 O -0.36 -6.56 10.26 -35.23 -0.36 -6.92 16 18 C 0.10 1.52 6.06 36.00 0.22 1.73 16 19 C -0.08 -1.13 5.51 -104.63 -0.58 -1.71 16 20 C -0.10 -1.30 9.72 -39.59 -0.38 -1.69 16 21 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 23 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 24 C -0.09 -1.33 9.68 -39.58 -0.38 -1.71 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.04 0.64 6.69 -51.93 -0.35 0.30 16 30 H 0.09 2.14 6.58 -51.93 -0.34 1.80 16 31 H 0.03 0.58 7.99 -51.93 -0.42 0.17 16 32 H 0.03 0.82 6.59 -51.93 -0.34 0.47 16 33 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.04 0.68 8.00 -51.93 -0.42 0.27 16 36 H 0.06 1.08 6.47 -51.93 -0.34 0.74 16 37 H 0.06 1.06 6.69 -51.93 -0.35 0.71 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -32.64 372.14 -9.16 -41.80 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.55 Total: -1.29 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.19 Total: -10.16 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.26 Total: -38.79 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.74 Total: -14.42 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.64 -9.16 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381082809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.843 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds