Wall clock time and date at job start Tue Mar 31 2020 06:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00121 * 2 1 4 4 C 1.52990 * 109.47377 * 184.96119 * 3 2 1 5 5 N 1.46901 * 109.47316 * 63.95057 * 4 3 2 6 6 C 1.46899 * 111.00627 * 199.95375 * 5 4 3 7 7 C 1.50706 * 109.46889 * 66.04386 * 6 5 4 8 8 H 1.07998 * 119.99969 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00128 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99846 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00215 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47185 * 90.00360 * 11 9 7 13 13 H 1.48507 * 109.47294 * 209.99896 * 11 9 7 14 14 H 1.48497 * 109.47513 * 330.00125 * 11 9 7 15 15 C 1.46898 * 111.00168 * 75.99476 * 5 4 3 16 16 C 1.52993 * 109.47786 * 199.94062 * 15 5 4 17 17 O 1.42905 * 109.46901 * 63.88357 * 16 15 5 18 18 C 1.42901 * 114.00079 * 184.96794 * 17 16 15 19 19 C 1.50692 * 109.47364 * 184.96698 * 18 17 16 20 20 C 1.38235 * 120.00393 * 85.04268 * 19 18 17 21 21 C 1.38230 * 120.00076 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00256 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99628 * 0.27293 * 22 21 20 24 24 C 1.38237 * 120.00220 * 359.51652 * 23 22 21 25 25 H 1.08997 * 109.46617 * 184.96472 * 1 2 3 26 26 H 1.09001 * 109.47206 * 304.96780 * 1 2 3 27 27 H 1.08998 * 109.47101 * 64.96747 * 1 2 3 28 28 H 1.09008 * 109.46400 * 64.96463 * 3 2 1 29 29 H 1.08997 * 109.47216 * 304.96847 * 3 2 1 30 30 H 1.09002 * 109.47728 * 303.95265 * 4 3 2 31 31 H 1.08995 * 109.47330 * 183.94700 * 4 3 2 32 32 H 1.08997 * 109.47513 * 186.04041 * 6 5 4 33 33 H 1.09000 * 109.46915 * 306.04640 * 6 5 4 34 34 H 0.96995 * 119.99906 * 179.97438 * 10 9 7 35 35 H 1.09006 * 109.46732 * 79.93859 * 15 5 4 36 36 H 1.09002 * 109.47029 * 319.94731 * 15 5 4 37 37 H 1.09000 * 109.46990 * 303.88951 * 16 15 5 38 38 H 1.08996 * 109.47944 * 183.88664 * 16 15 5 39 39 H 1.09006 * 109.47084 * 64.96304 * 18 17 16 40 40 H 1.09004 * 109.46991 * 304.96736 * 18 17 16 41 41 H 1.07994 * 119.99410 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.99772 * 179.97438 * 21 20 19 43 43 H 1.07993 * 120.00079 * 179.97438 * 22 21 20 44 44 H 1.07995 * 119.99576 * 179.72547 * 23 22 21 45 45 H 1.07999 * 120.00028 * 180.27591 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5305 1.1869 -0.1247 5 7 3.8701 0.5867 -1.4218 6 6 5.2276 0.0257 -1.4032 7 6 5.2773 -1.1373 -0.4460 8 1 4.3892 -1.4305 0.0941 9 6 6.4566 -1.8269 -0.2597 10 7 7.5382 -1.4695 -0.9171 11 14 6.5185 -3.2679 0.9272 12 1 6.1896 -4.5212 0.2018 13 1 7.8819 -3.3743 1.5060 14 1 5.5332 -3.0539 2.0175 15 6 3.7187 1.5626 -2.5093 16 6 3.5870 0.8242 -3.8427 17 8 2.3913 0.0416 -3.8378 18 6 2.2284 -0.7781 -4.9969 19 6 0.8866 -1.4619 -4.9441 20 6 -0.2400 -0.8104 -5.4104 21 6 -1.4707 -1.4379 -5.3624 22 6 -1.5750 -2.7170 -4.8486 23 6 -0.4493 -3.3665 -4.3777 24 6 0.7823 -2.7407 -4.4296 25 1 -0.3632 -1.0238 0.0889 26 1 -0.3634 0.5890 0.8421 27 1 -0.3633 0.4348 -0.9311 28 1 1.7607 1.8142 0.9312 29 1 1.6200 1.8770 -0.8421 30 1 3.9130 0.5569 0.6783 31 1 3.9792 2.1777 -0.0543 32 1 5.4935 -0.3156 -2.4036 33 1 5.9329 0.7918 -1.0811 34 1 8.3679 -1.9544 -0.7858 35 1 4.5933 2.2125 -2.5386 36 1 2.8255 2.1632 -2.3368 37 1 4.4482 0.1709 -3.9828 38 1 3.5441 1.5482 -4.6564 39 1 3.0181 -1.5291 -5.0247 40 1 2.2853 -0.1579 -5.8915 41 1 -0.1584 0.1887 -5.8121 42 1 -2.3509 -0.9287 -5.7263 43 1 -2.5366 -3.2070 -4.8108 44 1 -0.5314 -4.3640 -3.9722 45 1 1.6625 -3.2499 -4.0658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381082809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:43 Heat of formation + Delta-G solvation = -78.719704 kcal Electronic energy + Delta-G solvation = -24090.079649 eV Core-core repulsion = 20686.198668 eV Total energy + Delta-G solvation = -3403.880982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24787 -39.42984 -38.43401 -37.35767 -34.68617 -33.01289 -31.75330 -31.27682 -30.37558 -27.91214 -26.89559 -26.49528 -24.34829 -23.46524 -23.43405 -22.16971 -21.25115 -18.58675 -17.82086 -17.58416 -17.23912 -17.08424 -16.84406 -16.41075 -16.27524 -16.11702 -15.58165 -15.36316 -14.99322 -14.68499 -14.43616 -14.23193 -13.91988 -13.70538 -13.45375 -13.21731 -13.17745 -13.06189 -12.72845 -12.65271 -12.45930 -12.30435 -12.13025 -11.86893 -11.83030 -11.74369 -11.37243 -11.18118 -10.59858 -10.41598 -10.35315 -9.78385 -9.70501 -8.81717 -8.17228 -6.24386 0.39666 0.53786 1.39168 1.40655 1.52444 2.42136 2.68414 3.09030 3.14885 3.22502 3.33214 3.92769 3.94629 4.15193 4.18653 4.25266 4.32358 4.36367 4.37201 4.43052 4.48121 4.51125 4.57737 4.63901 4.64705 4.69089 4.71267 4.78227 4.80761 4.89856 4.95705 5.08990 5.11382 5.19211 5.26008 5.32418 5.58533 5.63500 5.71233 5.74698 6.12496 6.14202 6.37235 6.41325 6.55589 6.79095 6.92806 7.44243 8.93537 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.004640 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.953490 B = 6032.960657 C = 6384.490895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.402 6.402 3 C 0.080 3.920 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.211 3.789 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.961 3.039 12 H -0.276 1.276 13 H -0.279 1.279 14 H -0.268 1.268 15 C 0.053 3.947 16 C 0.075 3.925 17 O -0.378 6.378 18 C 0.099 3.901 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.120 4.120 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.004 0.996 33 H -0.037 1.037 34 H 0.263 0.737 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.134 0.866 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.136 0.864 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.264 4.231 -7.710 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.321 6.321 3 C 0.004 3.996 4 C -0.070 4.070 5 N -0.252 5.252 6 C 0.085 3.915 7 C -0.550 4.550 8 H 0.073 0.927 9 C -0.194 4.194 10 N -0.576 5.576 11 Si 0.787 3.213 12 H -0.202 1.202 13 H -0.204 1.204 14 H -0.193 1.193 15 C -0.075 4.075 16 C -0.002 4.002 17 O -0.298 6.298 18 C 0.022 3.978 19 C -0.100 4.100 20 C -0.127 4.127 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.138 4.138 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.023 0.977 33 H -0.020 1.020 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.154 0.846 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.429 3.648 -7.664 20.290 hybrid contribution 1.461 -0.029 0.493 1.542 sum -16.968 3.620 -7.171 18.774 Atomic orbital electron populations 1.22745 0.80800 1.02681 1.00030 1.88059 1.20218 1.28493 1.95284 1.22524 0.92700 0.84564 0.99848 1.22047 0.94694 0.97487 0.92763 1.61897 1.27456 1.33048 1.02789 1.19365 0.83719 0.92945 0.95442 1.21432 0.95358 1.14308 1.23886 0.92726 1.25794 0.95180 1.00302 0.98078 1.70072 1.01176 1.42435 1.43900 0.85503 0.77328 0.79371 0.79146 1.20200 1.20430 1.19292 1.22192 1.00723 0.93371 0.91242 1.22506 0.86755 0.93662 0.97314 1.88043 1.41275 1.58735 1.41716 1.21344 0.93962 0.93424 0.89048 1.19739 0.95019 0.94700 1.00548 1.21249 0.92138 0.99995 0.99268 1.21475 0.97732 0.95464 0.99698 1.21521 0.99092 0.95320 0.97724 1.21386 0.92362 1.00956 1.00149 1.21238 0.98627 0.95410 0.98565 0.90093 0.92803 0.94392 0.91679 0.93045 0.92037 0.93189 0.97748 1.01979 0.92836 0.93704 0.89500 0.95555 0.90669 0.94327 0.90917 0.84766 0.83202 0.83304 0.84591 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.40 -15.66 10.63 -148.98 -1.58 -17.25 16 3 C 0.08 2.70 6.11 71.98 0.44 3.14 16 4 C 0.06 2.36 5.18 86.30 0.45 2.81 16 5 N -0.53 -23.96 4.22 -900.82 -3.80 -27.76 16 6 C 0.21 11.64 4.55 85.56 0.39 12.03 16 7 C -0.51 -30.50 8.23 25.60 0.21 -30.29 16 8 H 0.05 3.34 7.32 -2.91 -0.02 3.32 16 9 C 0.00 0.23 5.46 84.65 0.46 0.69 16 10 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 11 Si 0.96 46.53 29.54 68.60 2.03 48.55 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 15 C 0.05 1.93 5.20 86.30 0.45 2.38 16 16 C 0.07 2.61 6.13 71.98 0.44 3.05 16 17 O -0.38 -14.06 10.26 -148.98 -1.53 -15.59 16 18 C 0.10 3.06 6.06 71.23 0.43 3.50 16 19 C -0.10 -2.93 5.51 -19.87 -0.11 -3.04 16 20 C -0.11 -2.58 9.72 22.27 0.22 -2.36 16 21 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 22 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 23 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 24 C -0.12 -3.59 9.68 22.27 0.22 -3.37 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.05 1.59 6.69 -2.39 -0.02 1.57 16 30 H 0.06 2.88 6.58 -2.39 -0.02 2.86 16 31 H 0.05 1.80 7.99 -2.39 -0.02 1.79 16 32 H 0.00 0.27 6.59 -2.39 -0.02 0.25 16 33 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.04 1.58 8.00 -2.38 -0.02 1.56 16 36 H 0.09 2.77 6.47 -2.39 -0.02 2.75 16 37 H 0.03 1.06 6.69 -2.39 -0.02 1.04 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.29 8.05 -2.38 -0.02 1.28 16 40 H 0.07 1.83 8.11 -2.38 -0.02 1.81 16 41 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 45 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -72.93 372.14 1.85 -71.08 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.94 Total: 14.72 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.51 Total: -16.53 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -3.51 Total: -84.99 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -3.11 Total: -32.83 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -72.93 1.85 -71.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381082809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.637 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds