Wall clock time and date at job start Tue Mar 31 2020 07:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35517 * 116.99438 * 2 1 4 4 C 1.39445 * 120.46238 * 179.97438 * 3 2 1 5 5 C 1.38194 * 118.50411 * 179.72457 * 4 3 2 6 6 C 1.50702 * 120.36310 * 179.97438 * 5 4 3 7 7 N 1.32457 * 119.27039 * 359.97438 * 5 4 3 8 8 C 1.32462 * 120.89078 * 359.97438 * 7 5 4 9 9 N 1.38395 * 119.18692 * 179.97438 * 8 7 5 10 10 C 1.46492 * 120.00234 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.47364 * 89.99466 * 10 9 8 12 12 H 1.07997 * 119.99417 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00117 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99830 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46857 * 90.00435 * 15 13 11 17 17 H 1.48498 * 109.46953 * 210.00010 * 15 13 11 18 18 H 1.48499 * 109.47019 * 330.00116 * 15 13 11 19 19 C 1.46500 * 119.99575 * 180.02562 * 9 8 7 20 20 C 1.52994 * 109.47255 * 90.00589 * 19 9 8 21 21 C 1.53002 * 109.47390 * 180.02562 * 20 19 9 22 22 C 1.53000 * 109.47461 * 174.99730 * 21 20 19 23 23 C 1.53003 * 109.46835 * 294.99828 * 21 20 19 24 24 N 1.32487 * 121.62489 * 0.02562 * 8 7 5 25 25 H 1.09002 * 109.46763 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47451 * 300.00073 * 1 2 3 27 27 H 1.09002 * 109.47116 * 60.00988 * 1 2 3 28 28 H 1.08001 * 120.74574 * 359.74364 * 4 3 2 29 29 H 1.09002 * 109.47429 * 89.99652 * 6 5 4 30 30 H 1.09002 * 109.47214 * 209.99947 * 6 5 4 31 31 H 1.09003 * 109.46969 * 329.99463 * 6 5 4 32 32 H 1.09000 * 109.47349 * 209.99532 * 10 9 8 33 33 H 1.09003 * 109.47378 * 329.99283 * 10 9 8 34 34 H 0.96998 * 119.99780 * 179.97438 * 14 13 11 35 35 H 1.09009 * 109.47066 * 210.00560 * 19 9 8 36 36 H 1.09007 * 109.47380 * 329.99967 * 19 9 8 37 37 H 1.09001 * 109.46871 * 299.99369 * 20 19 9 38 38 H 1.08996 * 109.47829 * 59.99607 * 20 19 9 39 39 H 1.09002 * 109.47433 * 54.99399 * 21 20 19 40 40 H 1.09002 * 109.47068 * 59.99445 * 22 21 20 41 41 H 1.09000 * 109.47283 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47184 * 300.00225 * 22 21 20 43 43 H 1.09002 * 109.46760 * 299.99983 * 23 21 20 44 44 H 1.08997 * 109.47141 * 59.99763 * 23 21 20 45 45 H 1.09000 * 109.47331 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4360 1.2919 0.0005 5 6 4.0208 2.5440 -0.0053 6 6 5.5213 2.6839 -0.0044 7 7 3.2480 3.6197 -0.0118 8 6 1.9281 3.5088 -0.0131 9 7 1.1544 4.6563 -0.0194 10 6 1.7967 5.9728 -0.0249 11 6 2.0186 6.4176 -1.4477 12 1 1.7114 5.7831 -2.2658 13 6 2.6129 7.6349 -1.7047 14 7 2.9865 8.4077 -0.7083 15 14 2.8873 8.1864 -3.4682 16 1 1.7015 8.9462 -3.9394 17 1 4.0898 9.0552 -3.5336 18 1 3.0886 6.9964 -4.3333 19 6 -0.3071 4.5542 -0.0204 20 6 -0.8174 4.5257 1.4216 21 6 -2.3436 4.4185 1.4206 22 6 -2.8451 4.2644 2.8578 23 6 -2.9433 5.6839 0.8040 24 7 1.3302 2.3265 -0.0077 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 4.0433 0.3988 0.0051 29 1 5.8843 2.7122 -1.0318 30 1 5.7999 3.6064 0.5049 31 1 5.9651 1.8342 0.5144 32 1 1.1557 6.6921 0.4847 33 1 2.7553 5.9116 0.4903 34 1 3.4049 9.2639 -0.8891 35 1 -0.7310 5.4143 -0.5389 36 1 -0.6071 3.6386 -0.5303 37 1 -0.3936 3.6656 1.9400 38 1 -0.5175 5.4412 1.9315 39 1 -2.6465 3.5504 0.8350 40 1 -2.5422 5.1325 3.4433 41 1 -3.9325 4.1885 2.8570 42 1 -2.4179 3.3630 3.2970 43 1 -2.6404 6.5519 1.3895 44 1 -2.5860 5.7936 -0.2199 45 1 -4.0306 5.6078 0.8036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434958401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:17 Heat of formation + Delta-G solvation = 0.869324 kcal Electronic energy + Delta-G solvation = -24375.401421 eV Core-core repulsion = 21007.264430 eV Total energy + Delta-G solvation = -3368.136991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56534 -38.30251 -37.18167 -35.28994 -33.34065 -32.41941 -31.02268 -29.04503 -28.35699 -27.08940 -26.91053 -26.29401 -23.53339 -23.32739 -21.74721 -20.39838 -19.68329 -17.87453 -17.12204 -16.41640 -15.85715 -15.66144 -15.01522 -14.79468 -14.75238 -14.26843 -14.24652 -13.92912 -13.72800 -12.93621 -12.92220 -12.75403 -12.35838 -12.30179 -12.06542 -11.96935 -11.81729 -11.73468 -11.36180 -11.26708 -11.05405 -10.82489 -10.76558 -10.53789 -10.49348 -10.23268 -10.15647 -10.04039 -9.72002 -9.46788 -8.83958 -8.53429 -8.37191 -7.01948 -6.01630 -4.06982 1.79656 1.93052 3.21770 3.29921 3.36538 3.40840 3.61064 4.42966 4.53144 4.66400 5.00493 5.05810 5.12919 5.25617 5.29708 5.31373 5.40702 5.41713 5.60293 5.70599 5.71342 5.73429 5.77984 5.85200 5.88367 5.91245 5.96552 6.00011 6.05416 6.10242 6.25281 6.27995 6.34828 6.38086 6.58359 6.68550 6.74239 6.98038 7.37586 7.47382 7.65656 7.85250 7.96523 8.25171 8.37436 8.91987 9.12598 9.57218 11.04529 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.009182 B = 0.006765 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.656654 B = 4137.700767 C = 6427.423178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.394 3.606 4 C -0.331 4.331 5 C 0.237 3.763 6 C -0.100 4.100 7 N -0.562 5.562 8 C 0.607 3.393 9 N -0.558 5.558 10 C 0.258 3.742 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.133 3.867 20 C -0.127 4.127 21 C -0.091 4.091 22 C -0.144 4.144 23 C -0.150 4.150 24 N -0.636 5.636 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 -12.466 4.333 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.214 6.214 3 C 0.205 3.795 4 C -0.359 4.359 5 C 0.088 3.912 6 C -0.158 4.158 7 N -0.288 5.288 8 C 0.252 3.748 9 N -0.268 5.268 10 C 0.139 3.861 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.138 4.138 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.009 3.991 20 C -0.166 4.166 21 C -0.111 4.111 22 C -0.202 4.202 23 C -0.207 4.207 24 N -0.376 5.376 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.503 -11.519 4.365 13.929 hybrid contribution 0.342 -0.291 -1.027 1.121 sum -6.161 -11.810 3.339 13.732 Atomic orbital electron populations 1.22793 0.77682 1.02275 1.02599 1.86194 1.22656 1.24957 1.87606 1.19643 0.89013 0.83952 0.86903 1.21105 0.92173 0.99722 1.22878 1.21170 0.96644 0.86890 0.86453 1.20693 0.88261 1.03461 1.03345 1.68006 1.04055 1.32453 1.24297 1.18913 0.85235 0.84725 0.85956 1.46940 1.04201 1.03796 1.71882 1.19364 0.93980 0.75335 0.97467 1.21411 1.39596 1.02718 0.92226 0.92729 1.24876 0.95377 0.96413 0.97170 1.69928 1.41361 1.11413 1.30652 0.86550 0.77685 0.78515 0.84972 1.20725 1.21097 1.20048 1.21379 0.79412 1.02408 0.95885 1.22018 0.94195 1.02118 0.98223 1.21032 0.95216 0.98451 0.96358 1.21819 1.00291 1.01538 0.96515 1.21906 0.99800 0.97572 1.01441 1.67425 1.40964 0.97974 1.31285 0.89118 0.92373 0.92357 0.84671 0.89980 0.89899 0.90750 0.94989 0.93101 0.92786 0.90242 0.91027 0.92264 0.91832 0.91443 0.92779 0.93076 0.93049 0.92563 0.92079 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.41 101.05 1.05 1.56 16 2 O -0.31 -4.78 10.49 -18.25 -0.19 -4.97 16 3 C 0.39 7.06 7.53 -16.71 -0.13 6.94 16 4 C -0.33 -5.59 9.80 -39.15 -0.38 -5.97 16 5 C 0.24 4.34 6.81 -82.34 -0.56 3.77 16 6 C -0.10 -1.40 10.21 36.01 0.37 -1.03 16 7 N -0.56 -12.53 9.04 -10.23 -0.09 -12.62 16 8 C 0.61 13.37 8.17 -322.87 -2.64 10.73 16 9 N -0.56 -12.38 2.55 -177.42 -0.45 -12.83 16 10 C 0.26 6.63 5.16 -5.20 -0.03 6.60 16 11 C -0.52 -14.53 9.39 -34.44 -0.32 -14.85 16 12 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.13 2.44 5.16 -4.04 -0.02 2.42 16 20 C -0.13 -1.99 5.01 -26.73 -0.13 -2.12 16 21 C -0.09 -1.15 2.92 -90.62 -0.26 -1.42 16 22 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 23 C -0.15 -1.85 8.95 37.16 0.33 -1.52 16 24 N -0.64 -12.44 8.05 -13.99 -0.11 -12.55 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 27 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.05 1.43 7.33 -51.93 -0.38 1.05 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.08 1.48 6.50 -51.92 -0.34 1.14 16 36 H 0.07 1.27 7.33 -51.92 -0.38 0.89 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -31.02 372.33 -9.75 -40.77 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.74 Total: -0.37 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.48 Total: 5.54 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 0.08 Total: -63.27 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.19 Total: -4.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.02 -9.75 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434958401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.639 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds