Wall clock time and date at job start Tue Mar 31 2020 07:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35517 * 116.99438 * 2 1 4 4 C 1.39445 * 120.46238 * 179.97438 * 3 2 1 5 5 C 1.38194 * 118.50411 * 179.72457 * 4 3 2 6 6 C 1.50702 * 120.36310 * 179.97438 * 5 4 3 7 7 N 1.32457 * 119.27039 * 359.97438 * 5 4 3 8 8 C 1.32462 * 120.89078 * 359.97438 * 7 5 4 9 9 N 1.38395 * 119.18692 * 179.97438 * 8 7 5 10 10 C 1.46492 * 120.00234 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.47364 * 89.99466 * 10 9 8 12 12 H 1.07997 * 119.99417 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00117 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99830 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46857 * 90.00435 * 15 13 11 17 17 H 1.48498 * 109.46953 * 210.00010 * 15 13 11 18 18 H 1.48499 * 109.47019 * 330.00116 * 15 13 11 19 19 C 1.46500 * 119.99575 * 180.02562 * 9 8 7 20 20 C 1.52994 * 109.47255 * 90.00589 * 19 9 8 21 21 C 1.53002 * 109.47390 * 180.02562 * 20 19 9 22 22 C 1.53000 * 109.47461 * 174.99730 * 21 20 19 23 23 C 1.53003 * 109.46835 * 294.99828 * 21 20 19 24 24 N 1.32487 * 121.62489 * 0.02562 * 8 7 5 25 25 H 1.09002 * 109.46763 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47451 * 300.00073 * 1 2 3 27 27 H 1.09002 * 109.47116 * 60.00988 * 1 2 3 28 28 H 1.08001 * 120.74574 * 359.74364 * 4 3 2 29 29 H 1.09002 * 109.47429 * 89.99652 * 6 5 4 30 30 H 1.09002 * 109.47214 * 209.99947 * 6 5 4 31 31 H 1.09003 * 109.46969 * 329.99463 * 6 5 4 32 32 H 1.09000 * 109.47349 * 209.99532 * 10 9 8 33 33 H 1.09003 * 109.47378 * 329.99283 * 10 9 8 34 34 H 0.96998 * 119.99780 * 179.97438 * 14 13 11 35 35 H 1.09009 * 109.47066 * 210.00560 * 19 9 8 36 36 H 1.09007 * 109.47380 * 329.99967 * 19 9 8 37 37 H 1.09001 * 109.46871 * 299.99369 * 20 19 9 38 38 H 1.08996 * 109.47829 * 59.99607 * 20 19 9 39 39 H 1.09002 * 109.47433 * 54.99399 * 21 20 19 40 40 H 1.09002 * 109.47068 * 59.99445 * 22 21 20 41 41 H 1.09000 * 109.47283 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47184 * 300.00225 * 22 21 20 43 43 H 1.09002 * 109.46760 * 299.99983 * 23 21 20 44 44 H 1.08997 * 109.47141 * 59.99763 * 23 21 20 45 45 H 1.09000 * 109.47331 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4360 1.2919 0.0005 5 6 4.0208 2.5440 -0.0053 6 6 5.5213 2.6839 -0.0044 7 7 3.2480 3.6197 -0.0118 8 6 1.9281 3.5088 -0.0131 9 7 1.1544 4.6563 -0.0194 10 6 1.7967 5.9728 -0.0249 11 6 2.0186 6.4176 -1.4477 12 1 1.7114 5.7831 -2.2658 13 6 2.6129 7.6349 -1.7047 14 7 2.9865 8.4077 -0.7083 15 14 2.8873 8.1864 -3.4682 16 1 1.7015 8.9462 -3.9394 17 1 4.0898 9.0552 -3.5336 18 1 3.0886 6.9964 -4.3333 19 6 -0.3071 4.5542 -0.0204 20 6 -0.8174 4.5257 1.4216 21 6 -2.3436 4.4185 1.4206 22 6 -2.8451 4.2644 2.8578 23 6 -2.9433 5.6839 0.8040 24 7 1.3302 2.3265 -0.0077 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 4.0433 0.3988 0.0051 29 1 5.8843 2.7122 -1.0318 30 1 5.7999 3.6064 0.5049 31 1 5.9651 1.8342 0.5144 32 1 1.1557 6.6921 0.4847 33 1 2.7553 5.9116 0.4903 34 1 3.4049 9.2639 -0.8891 35 1 -0.7310 5.4143 -0.5389 36 1 -0.6071 3.6386 -0.5303 37 1 -0.3936 3.6656 1.9400 38 1 -0.5175 5.4412 1.9315 39 1 -2.6465 3.5504 0.8350 40 1 -2.5422 5.1325 3.4433 41 1 -3.9325 4.1885 2.8570 42 1 -2.4179 3.3630 3.2970 43 1 -2.6404 6.5519 1.3895 44 1 -2.5860 5.7936 -0.2199 45 1 -4.0306 5.6078 0.8036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434958401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:16 Heat of formation + Delta-G solvation = -15.401468 kcal Electronic energy + Delta-G solvation = -24376.106975 eV Core-core repulsion = 21007.264430 eV Total energy + Delta-G solvation = -3368.842546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.01762 -39.62946 -38.53314 -36.67388 -35.03881 -34.25054 -32.43269 -30.63728 -29.60022 -28.60113 -27.99223 -27.58307 -25.32207 -24.81368 -23.21534 -21.88575 -20.85279 -19.30319 -18.64041 -18.44435 -17.21367 -17.13336 -16.60686 -16.25784 -16.11259 -15.68275 -15.63750 -15.20369 -14.93323 -14.43668 -14.35683 -14.13678 -13.82143 -13.58142 -13.31631 -13.19388 -13.07291 -12.95666 -12.83547 -12.72378 -12.57388 -12.53137 -12.29311 -12.08592 -11.87383 -11.63074 -11.59849 -11.51313 -11.41704 -10.95934 -10.60720 -10.33603 -10.00670 -8.70012 -8.12722 -6.30980 0.34777 0.46572 1.37090 1.38536 1.48935 1.84743 2.16581 2.40664 3.02410 3.11337 3.29021 3.69723 3.92151 4.00969 4.08028 4.09743 4.29178 4.42293 4.43970 4.48900 4.50221 4.58054 4.68263 4.73855 4.77983 4.80816 4.82282 4.89853 4.92795 5.02669 5.03105 5.06704 5.13631 5.15966 5.27806 5.32535 5.43599 5.47361 5.52527 5.69313 5.95010 6.09816 6.17863 6.26559 6.68929 6.81454 7.35590 7.57370 8.88622 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.009182 B = 0.006765 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.656654 B = 4137.700767 C = 6427.423178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.306 6.306 3 C 0.382 3.618 4 C -0.319 4.319 5 C 0.221 3.779 6 C -0.096 4.096 7 N -0.608 5.608 8 C 0.589 3.411 9 N -0.573 5.573 10 C 0.282 3.718 11 C -0.532 4.532 12 H 0.041 0.959 13 C 0.017 3.983 14 N -0.924 5.924 15 Si 0.960 3.040 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.137 3.863 20 C -0.113 4.113 21 C -0.086 4.086 22 C -0.140 4.140 23 C -0.149 4.149 24 N -0.635 5.635 25 H 0.131 0.869 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.171 0.829 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.015 0.985 33 H 0.019 0.981 34 H 0.267 0.733 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 -14.434 3.783 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.194 3.806 4 C -0.346 4.346 5 C 0.075 3.925 6 C -0.153 4.153 7 N -0.336 5.336 8 C 0.233 3.767 9 N -0.285 5.285 10 C 0.161 3.839 11 C -0.571 4.571 12 H 0.060 0.940 13 C -0.182 4.182 14 N -0.564 5.564 15 Si 0.785 3.215 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.203 1.203 19 C 0.014 3.986 20 C -0.152 4.152 21 C -0.105 4.105 22 C -0.198 4.198 23 C -0.206 4.206 24 N -0.376 5.376 25 H 0.149 0.851 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.189 0.811 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.001 -13.551 3.822 15.724 hybrid contribution 0.512 0.167 -0.827 0.987 sum -6.490 -13.384 2.995 15.173 Atomic orbital electron populations 1.23074 0.75806 1.04775 1.02092 1.86216 1.24458 1.23232 1.87165 1.20024 0.89834 0.84234 0.86528 1.21493 0.92193 1.00400 1.20475 1.21904 0.98283 0.86670 0.85681 1.20814 0.85597 1.04504 1.04355 1.68008 1.04707 1.34866 1.25999 1.19034 0.85489 0.85266 0.86908 1.46784 1.05429 1.02880 1.73383 1.18741 0.92290 0.76968 0.95876 1.21562 1.39891 1.02906 0.92738 0.94042 1.25672 0.94905 0.96365 1.01303 1.70034 1.41808 1.11811 1.32698 0.85533 0.78135 0.77967 0.79830 1.19432 1.20237 1.20257 1.21466 0.77556 1.02078 0.97485 1.21881 0.96613 1.00626 0.96047 1.21013 0.92534 0.99037 0.97885 1.21783 1.01563 1.01410 0.95007 1.21892 1.01226 0.97032 1.00427 1.67394 1.41113 0.97724 1.31392 0.85124 0.92689 0.93051 0.81116 0.88907 0.91281 0.86863 0.96697 0.96311 0.92441 0.91178 0.90495 0.93194 0.93718 0.90339 0.93309 0.90996 0.92840 0.93470 0.93299 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.41 113.37 1.18 1.99 16 2 O -0.31 -8.77 10.49 -88.20 -0.93 -9.70 16 3 C 0.38 13.24 7.53 84.85 0.64 13.88 16 4 C -0.32 -10.16 9.80 22.55 0.22 -9.94 16 5 C 0.22 7.96 6.81 42.45 0.29 8.25 16 6 C -0.10 -2.53 10.21 71.24 0.73 -1.80 16 7 N -0.61 -27.93 9.04 -186.27 -1.68 -29.62 16 8 C 0.59 26.74 8.17 261.51 2.14 28.88 16 9 N -0.57 -26.68 2.55 -715.24 -1.83 -28.51 16 10 C 0.28 15.38 5.16 85.64 0.44 15.83 16 11 C -0.53 -30.81 9.39 25.60 0.24 -30.57 16 12 H 0.04 2.46 7.81 -2.91 -0.02 2.43 16 13 C 0.02 0.96 5.46 84.65 0.46 1.42 16 14 N -0.92 -55.01 13.29 21.45 0.28 -54.73 16 15 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 19 C 0.14 5.22 5.16 86.38 0.45 5.66 16 20 C -0.11 -3.65 5.01 30.59 0.15 -3.50 16 21 C -0.09 -2.10 2.92 -10.79 -0.03 -2.13 16 22 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 23 C -0.15 -3.58 8.95 71.98 0.64 -2.94 16 24 N -0.63 -24.94 8.05 -310.87 -2.50 -27.45 16 25 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.25 8.12 -2.39 -0.02 1.23 16 27 H 0.05 1.21 8.11 -2.39 -0.02 1.19 16 28 H 0.17 4.12 8.06 -2.91 -0.02 4.09 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.11 2.07 8.09 -2.39 -0.02 2.05 16 32 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.02 1.13 7.33 -2.39 -0.02 1.11 16 34 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.07 2.75 6.50 -2.38 -0.02 2.73 16 36 H 0.08 2.80 7.33 -2.38 -0.02 2.78 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 1.29 6.57 -2.39 -0.02 1.27 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -69.39 372.33 4.53 -64.86 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.95 Total: 15.30 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 8.21 Total: 22.78 kcal Atomic # 7 Polarization: -134.57 SS G_CDS: -5.73 Total: -140.30 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.93 Total: -9.70 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.39 4.53 -64.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434958401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.457 kcal (2) G-P(sol) polarization free energy of solvation -69.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds