Wall clock time and date at job start Tue Mar 31 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47563 * 2 1 4 4 O 1.42903 * 109.47208 * 119.99806 * 2 1 3 5 5 C 1.53002 * 109.47153 * 239.99322 * 2 1 3 6 6 N 1.46903 * 109.47202 * 184.85361 * 5 2 1 7 7 C 1.46896 * 110.99808 * 165.46032 * 6 5 2 8 8 C 1.50701 * 109.47067 * 190.00280 * 7 6 5 9 9 C 1.38635 * 119.74475 * 269.72850 * 8 7 6 10 10 C 1.37622 * 120.24490 * 179.71913 * 9 8 7 11 11 C 1.40714 * 119.74329 * 0.57281 * 10 9 8 12 12 C 1.41395 * 120.24469 * 179.68114 * 11 10 9 13 13 H 1.07999 * 120.00119 * 29.18857 * 12 11 10 14 14 C 1.39946 * 120.00400 * 209.19350 * 12 11 10 15 15 N 1.30825 * 119.99419 * 10.65362 * 14 12 11 16 16 Si 1.86797 * 120.00347 * 190.66147 * 14 12 11 17 17 H 1.48505 * 109.47170 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47576 * 119.99371 * 16 14 12 19 19 H 1.48500 * 109.46911 * 239.99774 * 16 14 12 20 20 C 1.40712 * 119.51519 * 359.70175 * 11 10 9 21 21 C 1.37619 * 119.74316 * 359.97438 * 20 11 10 22 22 C 1.46903 * 110.99879 * 289.41508 * 6 5 2 23 23 H 1.09002 * 109.46568 * 208.85119 * 22 6 5 24 24 C 1.52992 * 109.47245 * 88.85364 * 22 6 5 25 25 C 1.53004 * 109.47148 * 328.84969 * 22 6 5 26 26 O 1.42901 * 109.47083 * 298.10138 * 25 22 6 27 27 H 1.08997 * 109.47025 * 60.00134 * 1 2 3 28 28 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46808 * 300.00190 * 1 2 3 30 30 H 0.96698 * 113.99915 * 300.00160 * 4 2 1 31 31 H 1.09000 * 109.46783 * 64.85867 * 5 2 1 32 32 H 1.08989 * 109.47376 * 304.85866 * 5 2 1 33 33 H 1.08999 * 109.47204 * 310.00310 * 7 6 5 34 34 H 1.08999 * 109.47217 * 69.99895 * 7 6 5 35 35 H 1.07996 * 119.87909 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.12915 * 180.27125 * 10 9 8 37 37 H 0.97004 * 119.99628 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.13570 * 179.97438 * 20 11 10 39 39 H 1.07997 * 119.88120 * 179.97438 * 21 20 11 40 40 H 1.09000 * 109.47580 * 66.54405 * 24 22 6 41 41 H 1.09004 * 109.47152 * 186.54826 * 24 22 6 42 42 H 1.09009 * 109.47009 * 306.54566 * 24 22 6 43 43 H 1.08997 * 109.46814 * 58.10262 * 25 22 6 44 44 H 1.09002 * 109.46542 * 178.10202 * 25 22 6 45 45 H 0.96700 * 113.99826 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7214 -1.2492 6 7 3.5044 -0.8237 -1.1920 7 6 4.0031 -1.7935 -2.1762 8 6 5.4662 -2.0550 -1.9269 9 6 6.4219 -1.2759 -2.5606 10 6 7.7607 -1.5019 -2.3359 11 6 8.1581 -2.5363 -1.4686 12 6 9.5308 -2.7822 -1.2354 13 1 10.2429 -1.9728 -1.2995 14 6 9.9669 -4.0744 -0.9216 15 7 9.1500 -5.0887 -1.0466 16 14 11.7149 -4.3511 -0.3241 17 1 12.4312 -3.0513 -0.2703 18 1 11.6849 -4.9565 1.0315 19 1 12.4187 -5.2653 -1.2591 20 6 7.1794 -3.3244 -0.8354 21 6 5.8462 -3.0761 -1.0696 22 6 4.1318 0.4907 -1.3834 23 1 5.1142 0.3616 -1.8378 24 6 4.2838 1.1854 -0.0288 25 6 3.2544 1.3461 -2.2998 26 8 3.1488 0.7189 -3.5794 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7210 -0.2701 1.9980 31 1 1.7495 -0.1598 -2.1371 32 1 1.6074 -1.7208 -1.2937 33 1 3.4462 -2.7258 -2.0821 34 1 3.8718 -1.3918 -3.1809 35 1 6.1146 -0.4859 -3.2298 36 1 8.5035 -0.8910 -2.8271 37 1 9.4521 -5.9844 -0.8287 38 1 7.4732 -4.1212 -0.1681 39 1 5.0932 -3.6799 -0.5852 40 1 5.0003 0.6369 0.5826 41 1 4.6407 2.2041 -0.1809 42 1 3.3185 1.2104 0.4770 43 1 2.2616 1.4470 -1.8615 44 1 3.7030 2.3329 -2.4146 45 1 2.6059 1.2074 -4.2132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443335855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:58 Heat of formation + Delta-G solvation = -67.497024 kcal Electronic energy + Delta-G solvation = -24547.841307 eV Core-core repulsion = 21144.446977 eV Total energy + Delta-G solvation = -3403.394330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.55112 -37.43349 -36.79097 -35.26715 -33.55901 -31.64131 -31.42795 -29.59985 -29.15139 -26.92145 -25.85819 -24.96577 -22.97775 -21.34644 -20.83788 -19.91072 -19.20681 -17.68562 -17.33265 -17.15198 -15.91166 -15.47798 -15.20296 -14.62154 -14.08433 -13.99151 -13.67598 -13.64320 -13.46614 -12.86652 -12.75095 -12.43615 -12.41835 -12.13730 -12.02241 -11.81510 -11.55598 -11.44503 -11.30831 -11.12674 -10.96225 -10.87887 -10.58902 -10.42132 -10.25485 -10.16287 -10.07002 -9.60616 -9.37363 -9.20221 -9.08596 -7.64876 -7.28954 -7.09236 -6.58483 -4.24438 2.84932 3.14304 3.19257 3.20192 3.25474 4.03441 4.11091 4.38724 4.40576 4.81903 4.90860 4.98245 5.08030 5.18096 5.31573 5.40132 5.48330 5.64461 5.73621 5.79099 5.85217 5.88062 5.95660 5.96847 6.08745 6.14361 6.24522 6.43910 6.53930 6.56742 6.60486 6.65070 7.08401 7.21067 7.43566 7.48624 7.58248 7.62977 7.67391 7.77122 7.85003 8.02856 8.19336 8.29936 8.44332 8.78852 9.03278 9.11218 10.35995 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024572 B = 0.003767 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.235366 B = 7431.228569 C = 7817.666979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.058 0.942 4 O -0.540 6.540 5 C 0.052 3.948 6 N -0.503 5.503 7 C 0.116 3.884 8 C -0.192 4.192 9 C -0.090 4.090 10 C -0.223 4.223 11 C 0.110 3.890 12 C -0.467 4.467 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.805 5.805 16 Si 0.908 3.092 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.276 1.276 20 C -0.158 4.158 21 C -0.083 4.083 22 C 0.071 3.929 23 H 0.102 0.898 24 C -0.140 4.140 25 C 0.042 3.958 26 O -0.562 6.562 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.363 0.637 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.277 0.723 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 11.027 0.755 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.038 3.962 3 H 0.076 0.924 4 O -0.343 6.343 5 C -0.076 4.076 6 N -0.226 5.226 7 C -0.010 4.010 8 C -0.193 4.193 9 C -0.109 4.109 10 C -0.242 4.242 11 C 0.108 3.892 12 C -0.497 4.497 13 H 0.092 0.908 14 C -0.142 4.142 15 N -0.432 5.432 16 Si 0.733 3.267 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.202 1.202 20 C -0.177 4.177 21 C -0.102 4.102 22 C -0.038 4.038 23 H 0.120 0.880 24 C -0.198 4.198 25 C -0.037 4.037 26 O -0.367 6.367 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.208 0.792 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -13.931 9.741 1.077 17.033 hybrid contribution -0.146 0.904 -0.433 1.013 sum -14.077 10.646 0.644 17.661 Atomic orbital electron populations 1.22548 0.97327 1.02750 1.01899 1.22061 0.91253 0.95752 0.87171 0.92424 1.86800 1.76483 1.56344 1.14664 1.22283 0.90124 1.00675 0.94516 1.62221 1.02972 1.06851 1.50572 1.20833 0.93702 0.93843 0.92656 1.18940 0.92274 1.01809 1.06312 1.20378 0.93286 0.97980 0.99210 1.20982 0.94157 1.04589 1.04503 1.17614 0.93416 0.89967 0.88209 1.19578 0.93331 0.94314 1.42497 0.90758 1.25854 0.99459 0.95830 0.93079 1.69816 1.36561 1.00046 1.36729 0.86271 0.82328 0.79164 0.78932 1.18614 1.19887 1.20151 1.21344 0.91216 1.02664 1.02515 1.20537 0.95568 0.96663 0.97409 1.21957 0.99446 0.88303 0.94102 0.88047 1.21932 1.02728 0.98525 0.96586 1.23094 0.99700 0.96370 0.84555 1.86647 1.74615 1.51916 1.23496 0.92112 0.91790 0.92510 0.79168 0.92588 0.91148 0.92393 0.93973 0.89647 0.89322 0.91232 0.86501 0.89546 0.91096 0.93562 0.91977 0.93497 0.93967 0.78493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 9.53 37.16 0.35 -1.28 16 2 C 0.10 1.10 2.43 -26.73 -0.06 1.04 16 3 H 0.06 0.62 4.42 -51.93 -0.23 0.39 16 4 O -0.54 -7.09 12.57 -35.23 -0.44 -7.53 16 5 C 0.05 0.72 4.11 -3.82 -0.02 0.71 16 6 N -0.50 -8.51 4.11 -228.09 -0.94 -9.45 16 7 C 0.12 2.23 4.97 -4.98 -0.02 2.21 16 8 C -0.19 -4.37 5.03 -104.33 -0.52 -4.90 16 9 C -0.09 -2.09 7.94 -39.66 -0.32 -2.40 16 10 C -0.22 -5.67 9.80 -38.87 -0.38 -6.05 16 11 C 0.11 3.05 5.55 -106.83 -0.59 2.46 16 12 C -0.47 -12.87 9.06 -37.74 -0.34 -13.21 16 13 H 0.07 1.98 7.87 -52.49 -0.41 1.57 16 14 C 0.07 1.92 5.25 -17.34 -0.09 1.83 16 15 N -0.80 -21.71 10.86 55.55 0.60 -21.10 16 16 Si 0.91 19.46 29.57 -169.99 -5.03 14.44 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 C -0.16 -4.29 8.66 -38.87 -0.34 -4.63 16 21 C -0.08 -2.05 9.67 -39.66 -0.38 -2.43 16 22 C 0.07 1.11 2.45 -67.71 -0.17 0.94 16 23 H 0.10 1.89 4.59 -51.93 -0.24 1.65 16 24 C -0.14 -1.98 9.20 37.15 0.34 -1.63 16 25 C 0.04 0.51 5.57 37.16 0.21 0.72 16 26 O -0.56 -7.10 10.69 -35.23 -0.38 -7.47 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.36 3.15 9.08 45.56 0.41 3.57 16 31 H 0.06 0.71 4.88 -51.93 -0.25 0.46 16 32 H 0.07 1.03 7.84 -51.94 -0.41 0.62 16 33 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 34 H 0.04 0.81 6.32 -51.93 -0.33 0.48 16 35 H 0.09 1.83 7.30 -52.49 -0.38 1.44 16 36 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 38 H 0.12 3.30 6.25 -52.49 -0.33 2.97 16 39 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.78 4.09 -51.92 -0.21 0.57 16 43 H 0.05 0.50 4.94 -51.93 -0.26 0.24 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.37 2.85 9.12 45.56 0.42 3.26 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -31.20 346.11 -8.44 -39.64 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.14 Total: 12.91 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -2.33 Total: -26.65 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: -0.33 Total: -30.55 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.82 Total: -15.00 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.20 -8.44 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443335855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.857 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds