Wall clock time and date at job start Tue Mar 31 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47563 * 2 1 4 4 O 1.42903 * 109.47208 * 119.99806 * 2 1 3 5 5 C 1.53002 * 109.47153 * 239.99322 * 2 1 3 6 6 N 1.46903 * 109.47202 * 184.85361 * 5 2 1 7 7 C 1.46896 * 110.99808 * 165.46032 * 6 5 2 8 8 C 1.50701 * 109.47067 * 190.00280 * 7 6 5 9 9 C 1.38635 * 119.74475 * 269.72850 * 8 7 6 10 10 C 1.37622 * 120.24490 * 179.71913 * 9 8 7 11 11 C 1.40714 * 119.74329 * 0.57281 * 10 9 8 12 12 C 1.41395 * 120.24469 * 179.68114 * 11 10 9 13 13 H 1.07999 * 120.00119 * 29.18857 * 12 11 10 14 14 C 1.39946 * 120.00400 * 209.19350 * 12 11 10 15 15 N 1.30825 * 119.99419 * 10.65362 * 14 12 11 16 16 Si 1.86797 * 120.00347 * 190.66147 * 14 12 11 17 17 H 1.48505 * 109.47170 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47576 * 119.99371 * 16 14 12 19 19 H 1.48500 * 109.46911 * 239.99774 * 16 14 12 20 20 C 1.40712 * 119.51519 * 359.70175 * 11 10 9 21 21 C 1.37619 * 119.74316 * 359.97438 * 20 11 10 22 22 C 1.46903 * 110.99879 * 289.41508 * 6 5 2 23 23 H 1.09002 * 109.46568 * 208.85119 * 22 6 5 24 24 C 1.52992 * 109.47245 * 88.85364 * 22 6 5 25 25 C 1.53004 * 109.47148 * 328.84969 * 22 6 5 26 26 O 1.42901 * 109.47083 * 298.10138 * 25 22 6 27 27 H 1.08997 * 109.47025 * 60.00134 * 1 2 3 28 28 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46808 * 300.00190 * 1 2 3 30 30 H 0.96698 * 113.99915 * 300.00160 * 4 2 1 31 31 H 1.09000 * 109.46783 * 64.85867 * 5 2 1 32 32 H 1.08989 * 109.47376 * 304.85866 * 5 2 1 33 33 H 1.08999 * 109.47204 * 310.00310 * 7 6 5 34 34 H 1.08999 * 109.47217 * 69.99895 * 7 6 5 35 35 H 1.07996 * 119.87909 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.12915 * 180.27125 * 10 9 8 37 37 H 0.97004 * 119.99628 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.13570 * 179.97438 * 20 11 10 39 39 H 1.07997 * 119.88120 * 179.97438 * 21 20 11 40 40 H 1.09000 * 109.47580 * 66.54405 * 24 22 6 41 41 H 1.09004 * 109.47152 * 186.54826 * 24 22 6 42 42 H 1.09009 * 109.47009 * 306.54566 * 24 22 6 43 43 H 1.08997 * 109.46814 * 58.10262 * 25 22 6 44 44 H 1.09002 * 109.46542 * 178.10202 * 25 22 6 45 45 H 0.96700 * 113.99826 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7214 -1.2492 6 7 3.5044 -0.8237 -1.1920 7 6 4.0031 -1.7935 -2.1762 8 6 5.4662 -2.0550 -1.9269 9 6 6.4219 -1.2759 -2.5606 10 6 7.7607 -1.5019 -2.3359 11 6 8.1581 -2.5363 -1.4686 12 6 9.5308 -2.7822 -1.2354 13 1 10.2429 -1.9728 -1.2995 14 6 9.9669 -4.0744 -0.9216 15 7 9.1500 -5.0887 -1.0466 16 14 11.7149 -4.3511 -0.3241 17 1 12.4312 -3.0513 -0.2703 18 1 11.6849 -4.9565 1.0315 19 1 12.4187 -5.2653 -1.2591 20 6 7.1794 -3.3244 -0.8354 21 6 5.8462 -3.0761 -1.0696 22 6 4.1318 0.4907 -1.3834 23 1 5.1142 0.3616 -1.8378 24 6 4.2838 1.1854 -0.0288 25 6 3.2544 1.3461 -2.2998 26 8 3.1488 0.7189 -3.5794 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7210 -0.2701 1.9980 31 1 1.7495 -0.1598 -2.1371 32 1 1.6074 -1.7208 -1.2937 33 1 3.4462 -2.7258 -2.0821 34 1 3.8718 -1.3918 -3.1809 35 1 6.1146 -0.4859 -3.2298 36 1 8.5035 -0.8910 -2.8271 37 1 9.4521 -5.9844 -0.8287 38 1 7.4732 -4.1212 -0.1681 39 1 5.0932 -3.6799 -0.5852 40 1 5.0003 0.6369 0.5826 41 1 4.6407 2.2041 -0.1809 42 1 3.3185 1.2104 0.4770 43 1 2.2616 1.4470 -1.8615 44 1 3.7030 2.3329 -2.4146 45 1 2.6059 1.2074 -4.2132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443335855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:57 Heat of formation + Delta-G solvation = -91.068648 kcal Electronic energy + Delta-G solvation = -24548.863449 eV Core-core repulsion = 21144.446977 eV Total energy + Delta-G solvation = -3404.416472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75534 -39.21353 -37.75580 -36.49919 -35.39531 -33.01054 -32.55468 -31.22751 -31.04446 -28.44324 -26.87136 -26.38039 -24.58913 -22.89418 -22.32999 -21.55730 -20.52671 -19.16707 -18.65291 -18.25828 -17.16311 -16.98860 -16.66325 -15.93241 -15.69916 -15.37956 -15.20275 -14.95112 -14.67266 -14.25400 -14.11244 -13.92261 -13.74866 -13.37843 -13.29100 -13.16959 -12.97609 -12.82809 -12.64401 -12.59863 -12.56257 -12.40246 -12.11697 -11.90734 -11.65576 -11.48851 -11.23731 -11.14595 -11.03969 -10.97857 -10.49043 -9.30239 -9.14435 -8.85395 -8.54960 -6.32126 0.98088 1.16895 1.38096 1.50532 1.53506 2.23401 2.73433 3.12128 3.38023 3.56554 3.79918 4.00750 4.06467 4.19056 4.24137 4.38174 4.39026 4.44385 4.49620 4.57603 4.64998 4.68209 4.72158 4.84602 4.85779 4.91510 4.98086 5.01982 5.08671 5.09558 5.20202 5.27783 5.34114 5.43006 5.50163 5.51294 5.75601 5.98568 6.14116 6.25095 6.38523 6.42858 6.48497 6.75000 6.92256 6.98689 7.07688 7.12067 8.42026 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024572 B = 0.003767 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.235366 B = 7431.228569 C = 7817.666979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.099 3.901 3 H 0.070 0.930 4 O -0.570 6.570 5 C 0.050 3.950 6 N -0.519 5.519 7 C 0.125 3.875 8 C -0.180 4.180 9 C -0.083 4.083 10 C -0.236 4.236 11 C 0.079 3.921 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.030 3.970 15 N -0.838 5.838 16 Si 0.985 3.015 17 H -0.258 1.258 18 H -0.265 1.265 19 H -0.266 1.266 20 C -0.180 4.180 21 C -0.091 4.091 22 C 0.064 3.936 23 H 0.067 0.933 24 C -0.135 4.135 25 C 0.050 3.950 26 O -0.584 6.584 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.381 0.619 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.285 0.715 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.256 12.817 0.644 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.040 3.960 3 H 0.087 0.913 4 O -0.376 6.376 5 C -0.078 4.078 6 N -0.242 5.242 7 C -0.002 4.002 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.256 4.256 11 C 0.077 3.923 12 C -0.535 4.535 13 H 0.091 0.909 14 C -0.182 4.182 15 N -0.466 5.466 16 Si 0.806 3.194 17 H -0.182 1.182 18 H -0.190 1.190 19 H -0.191 1.191 20 C -0.199 4.199 21 C -0.110 4.110 22 C -0.045 4.045 23 H 0.085 0.915 24 C -0.192 4.192 25 C -0.029 4.029 26 O -0.393 6.393 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.229 0.771 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -15.504 11.561 0.960 19.364 hybrid contribution 0.174 0.410 -0.438 0.625 sum -15.329 11.971 0.521 19.457 Atomic orbital electron populations 1.22467 0.95018 1.02658 1.03600 1.22071 0.92920 0.95434 0.85557 0.91273 1.86746 1.77257 1.57509 1.16134 1.22415 0.87858 1.00778 0.96743 1.62132 1.05088 1.07289 1.49672 1.20654 0.91082 0.94820 0.93622 1.19339 0.94592 1.00051 1.04132 1.20581 0.92420 0.98145 0.99002 1.21185 0.95484 1.04415 1.04498 1.17931 0.93976 0.91118 0.89302 1.19823 0.93545 0.95300 1.44817 0.90945 1.26752 1.04087 0.94943 0.92466 1.69887 1.38780 1.00678 1.37219 0.85115 0.76472 0.79186 0.78600 1.18205 1.18981 1.19086 1.21266 0.92357 1.02978 1.03348 1.20707 0.94855 0.97476 0.97989 1.21960 0.98485 0.88547 0.95491 0.91461 1.21879 1.02863 0.98975 0.95504 1.22929 1.00109 0.95870 0.84009 1.86571 1.75518 1.53037 1.24137 0.90600 0.92795 0.90643 0.77074 0.90913 0.92421 0.92609 0.93546 0.87392 0.88677 0.90501 0.88469 0.88724 0.94511 0.91375 0.90163 0.91244 0.92303 0.75861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 9.53 71.98 0.69 -1.83 16 2 C 0.10 1.97 2.43 30.60 0.07 2.04 16 3 H 0.07 1.21 4.42 -2.39 -0.01 1.20 16 4 O -0.57 -13.97 12.57 -148.98 -1.87 -15.84 16 5 C 0.05 1.26 4.11 86.30 0.35 1.62 16 6 N -0.52 -16.92 4.11 -875.53 -3.60 -20.52 16 7 C 0.13 4.74 4.97 85.56 0.43 5.16 16 8 C -0.18 -8.27 5.03 -19.67 -0.10 -8.37 16 9 C -0.08 -3.88 7.94 22.22 0.18 -3.71 16 10 C -0.24 -12.38 9.80 22.73 0.22 -12.16 16 11 C 0.08 4.55 5.55 -21.29 -0.12 4.44 16 12 C -0.50 -28.94 9.06 23.46 0.21 -28.73 16 13 H 0.07 4.01 7.87 -2.91 -0.02 3.99 16 14 C 0.03 1.61 5.25 85.26 0.45 2.06 16 15 N -0.84 -46.75 10.86 21.83 0.24 -46.51 16 16 Si 0.99 40.58 29.57 68.60 2.03 42.61 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 19 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 20 C -0.18 -10.26 8.66 22.73 0.20 -10.06 16 21 C -0.09 -4.67 9.67 22.22 0.21 -4.46 16 22 C 0.06 1.89 2.45 44.91 0.11 2.00 16 23 H 0.07 2.45 4.59 -2.39 -0.01 2.44 16 24 C -0.13 -3.59 9.20 71.98 0.66 -2.92 16 25 C 0.05 1.04 5.57 71.98 0.40 1.44 16 26 O -0.58 -12.94 10.69 -148.98 -1.59 -14.53 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.38 5.84 9.08 -74.06 -0.67 5.17 16 31 H 0.07 1.60 4.88 -2.39 -0.01 1.59 16 32 H 0.06 1.60 7.84 -2.39 -0.02 1.58 16 33 H 0.06 2.11 7.82 -2.39 -0.02 2.09 16 34 H 0.05 1.72 6.32 -2.39 -0.02 1.70 16 35 H 0.11 4.53 7.30 -2.91 -0.02 4.51 16 36 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.28 14.35 8.30 -92.71 -0.77 13.58 16 38 H 0.10 5.83 6.25 -2.91 -0.02 5.81 16 39 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.08 1.81 4.09 -2.38 -0.01 1.80 16 43 H 0.07 1.15 4.94 -2.39 -0.01 1.14 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.39 4.64 9.12 -74.06 -0.68 3.96 16 Total: -1.00 -70.29 346.11 -1.16 -71.45 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.33 Total: 36.82 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 3.97 Total: -53.48 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -3.36 Total: -67.03 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -3.46 Total: -30.37 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -70.29 -1.16 -71.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443335855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.616 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds