Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47020 * 2 1 4 4 C 1.52998 * 109.47350 * 239.99694 * 2 1 3 5 5 O 1.42895 * 109.47143 * 178.57086 * 4 2 1 6 6 N 1.46901 * 109.46953 * 119.99382 * 2 1 3 7 7 C 1.46896 * 111.00221 * 266.23184 * 6 2 1 8 8 C 1.50699 * 109.47104 * 286.99988 * 7 6 2 9 9 C 1.38639 * 119.74417 * 96.45564 * 8 7 6 10 10 C 1.37619 * 120.24703 * 179.70440 * 9 8 7 11 11 C 1.40716 * 119.74583 * 0.27632 * 10 9 8 12 12 C 1.41395 * 120.24554 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00085 * 342.03961 * 12 11 10 14 14 C 1.39950 * 119.99890 * 162.03704 * 12 11 10 15 15 N 1.30821 * 119.99962 * 330.33422 * 14 12 11 16 16 Si 1.86800 * 119.99664 * 150.33213 * 14 12 11 17 17 H 1.48501 * 109.46885 * 94.99844 * 16 14 12 18 18 H 1.48494 * 109.47028 * 214.99305 * 16 14 12 19 19 H 1.48493 * 109.47233 * 334.99765 * 16 14 12 20 20 C 1.40717 * 119.50880 * 0.02562 * 11 10 9 21 21 C 1.37615 * 119.74992 * 359.97438 * 20 11 10 22 22 C 1.46904 * 110.99777 * 30.18618 * 6 2 1 23 23 C 1.53007 * 109.47042 * 73.23030 * 22 6 2 24 24 H 1.09001 * 109.47213 * 293.99043 * 23 22 6 25 25 C 1.53006 * 109.46737 * 173.98831 * 23 22 6 26 26 O 1.42903 * 109.47015 * 53.99173 * 23 22 6 27 27 H 1.09006 * 109.47585 * 295.56326 * 1 2 3 28 28 H 1.09009 * 109.47133 * 55.55499 * 1 2 3 29 29 H 1.09000 * 109.47455 * 175.55557 * 1 2 3 30 30 H 1.08995 * 109.47185 * 298.57864 * 4 2 1 31 31 H 1.09007 * 109.46654 * 58.57412 * 4 2 1 32 32 H 0.96699 * 113.99948 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.46953 * 167.00713 * 7 6 2 34 34 H 1.08999 * 109.47217 * 47.00743 * 7 6 2 35 35 H 1.08000 * 119.87436 * 359.97438 * 9 8 7 36 36 H 1.07997 * 120.12624 * 180.30171 * 10 9 8 37 37 H 0.97001 * 119.99625 * 180.02562 * 15 14 12 38 38 H 1.08006 * 120.12564 * 180.02562 * 20 11 10 39 39 H 1.07994 * 119.87623 * 180.02562 * 21 20 11 40 40 H 1.08996 * 109.47114 * 193.22892 * 22 6 2 41 41 H 1.08998 * 109.46974 * 313.23433 * 22 6 2 42 42 H 1.08997 * 109.46970 * 60.00021 * 25 23 22 43 43 H 1.09005 * 109.46303 * 179.97438 * 25 23 22 44 44 H 1.08995 * 109.47025 * 300.00215 * 25 23 22 45 45 H 0.96696 * 113.99778 * 59.99837 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 3.4686 -0.6922 -1.2660 6 7 2.0196 -0.6924 1.1995 7 6 2.2801 0.2596 2.2875 8 6 3.5273 1.0468 1.9783 9 6 3.4230 2.2980 1.3903 10 6 4.5549 3.0284 1.1090 11 6 5.8219 2.4982 1.4152 12 6 6.9919 3.2397 1.1312 13 1 6.9534 4.0626 0.4328 14 6 8.1996 2.9074 1.7553 15 7 8.1935 2.3722 2.9490 16 14 9.8204 3.2282 0.8838 17 1 10.3654 4.5392 1.3190 18 1 10.7865 2.1531 1.2240 19 1 9.5977 3.2474 -0.5842 20 6 5.9159 1.2246 2.0061 21 6 4.7706 0.5120 2.2785 22 6 1.0773 -1.7353 1.6269 23 6 1.1539 -2.9189 0.6603 24 1 0.7931 -2.6107 -0.3210 25 6 0.2860 -4.0639 1.1864 26 8 2.5092 -3.3592 0.5528 27 1 -0.3634 0.4435 0.9271 28 1 -0.3634 0.5813 -0.8476 29 1 -0.3634 -1.0245 -0.0796 30 1 1.6977 -1.7560 -1.2365 31 1 1.6559 -0.2224 -2.1390 32 1 3.8619 -1.1320 -2.0322 33 1 2.4165 -0.2849 3.2219 34 1 1.4348 0.9411 2.3841 35 1 2.4495 2.7028 1.1561 36 1 4.4711 4.0049 0.6554 37 1 9.0306 2.1422 3.3817 38 1 6.8833 0.8082 2.2456 39 1 4.8404 -0.4655 2.7324 40 1 1.3362 -2.0693 2.6315 41 1 0.0648 -1.3318 1.6276 42 1 -0.7477 -3.7280 1.2685 43 1 0.3402 -4.9069 0.4976 44 1 0.6468 -4.3720 2.1677 45 1 2.8961 -3.6491 1.3902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443335857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -69.340227 kcal Electronic energy + Delta-G solvation = -24662.985162 eV Core-core repulsion = 21259.510905 eV Total energy + Delta-G solvation = -3403.474257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.36767 -37.36043 -36.42523 -35.36836 -33.67394 -31.46659 -31.22128 -29.53911 -29.09616 -26.94236 -26.10182 -24.87855 -22.97180 -21.53257 -20.84385 -20.03711 -19.19140 -17.18624 -16.83493 -16.60504 -16.05319 -15.35530 -15.08411 -14.72114 -14.38409 -13.91840 -13.85771 -13.60125 -13.34295 -13.24881 -12.58824 -12.37141 -12.28238 -12.09303 -12.01781 -11.87251 -11.79416 -11.45626 -11.32743 -11.12894 -10.92470 -10.82780 -10.68494 -10.45557 -10.28336 -10.18623 -9.83967 -9.41245 -9.25955 -9.21982 -8.85197 -7.68882 -7.26087 -7.20075 -6.76111 -4.17201 2.85843 3.12581 3.16606 3.26624 3.31808 3.99747 4.14663 4.62004 4.63232 4.77045 4.79584 5.05387 5.12112 5.21906 5.40229 5.44242 5.57642 5.61359 5.67471 5.70028 5.77889 5.82143 5.84535 5.90117 5.97593 6.06667 6.11137 6.20918 6.32641 6.45601 6.54284 6.59207 7.10621 7.15562 7.41795 7.50621 7.58446 7.61559 7.76945 7.91944 8.06816 8.19528 8.28015 8.34401 8.44100 8.78185 9.02589 9.15263 10.18940 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.003996 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.196648 B = 7005.143106 C = 7156.603038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 H 0.093 0.907 4 C 0.089 3.911 5 O -0.535 6.535 6 N -0.500 5.500 7 C 0.121 3.879 8 C -0.202 4.202 9 C -0.079 4.079 10 C -0.234 4.234 11 C 0.116 3.884 12 C -0.469 4.469 13 H 0.077 0.923 14 C 0.086 3.914 15 N -0.777 5.777 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.179 4.179 21 C -0.063 4.063 22 C 0.008 3.992 23 C 0.102 3.898 24 H 0.097 0.903 25 C -0.186 4.186 26 O -0.541 6.541 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.362 0.638 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.280 0.720 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 -9.567 -3.539 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.032 4.032 3 H 0.111 0.889 4 C 0.010 3.990 5 O -0.337 6.337 6 N -0.223 5.223 7 C -0.005 4.005 8 C -0.204 4.204 9 C -0.098 4.098 10 C -0.253 4.253 11 C 0.114 3.886 12 C -0.497 4.497 13 H 0.095 0.905 14 C -0.134 4.134 15 N -0.401 5.401 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.198 4.198 21 C -0.082 4.082 22 C -0.121 4.121 23 C 0.042 3.958 24 H 0.114 0.886 25 C -0.244 4.244 26 O -0.345 6.345 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.207 0.793 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.640 -9.385 -3.491 16.125 hybrid contribution 0.006 0.105 -0.022 0.108 sum -12.634 -9.279 -3.513 16.064 Atomic orbital electron populations 1.22405 0.97500 1.01789 1.02086 1.21712 0.91120 0.99718 0.90682 0.88878 1.22285 0.82922 0.98464 0.95289 1.86794 1.18128 1.80381 1.48405 1.62155 1.42717 1.12750 1.04635 1.20776 0.95215 0.92345 0.92168 1.18688 0.92809 0.96244 1.12648 1.20254 0.95865 0.94607 0.99057 1.20780 0.92684 0.99591 1.12269 1.17518 0.91638 0.91173 0.88283 1.19539 0.92575 1.14787 1.22819 0.90523 1.25898 1.01358 0.92728 0.93399 1.69922 1.29605 1.30126 1.10430 0.86512 0.81131 0.78711 0.81664 1.19674 1.19978 1.18260 1.21128 0.96834 0.95410 1.06438 1.20316 0.92420 0.96766 0.98725 1.23077 0.95849 0.94314 0.98829 1.22034 0.83046 0.91472 0.99199 0.88592 1.22541 1.00539 0.99628 1.01722 1.86615 1.25867 1.85998 1.35998 0.92239 0.92238 0.92221 0.93538 0.95507 0.79340 0.92187 0.96242 0.90488 0.89602 0.90893 0.87354 0.89954 0.91319 0.93657 0.92085 0.91975 0.92382 0.78358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 7.78 37.16 0.29 -1.81 16 2 C 0.08 1.18 2.32 -67.71 -0.16 1.03 16 3 H 0.09 1.72 5.53 -51.93 -0.29 1.43 16 4 C 0.09 1.33 6.38 37.16 0.24 1.56 16 5 O -0.54 -9.70 13.55 -35.23 -0.48 -10.18 16 6 N -0.50 -8.04 3.93 -228.08 -0.90 -8.94 16 7 C 0.12 2.19 5.05 -4.98 -0.03 2.17 16 8 C -0.20 -4.56 5.06 -104.33 -0.53 -5.08 16 9 C -0.08 -1.84 8.31 -39.66 -0.33 -2.17 16 10 C -0.23 -6.04 9.80 -38.87 -0.38 -6.42 16 11 C 0.12 3.24 5.62 -106.82 -0.60 2.64 16 12 C -0.47 -12.96 8.99 -37.74 -0.34 -13.30 16 13 H 0.08 2.05 7.99 -52.49 -0.42 1.63 16 14 C 0.09 2.23 4.91 -17.34 -0.09 2.15 16 15 N -0.78 -20.56 11.31 55.55 0.63 -19.93 16 16 Si 0.90 19.10 29.65 -169.99 -5.04 14.06 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 20 C -0.18 -4.87 8.79 -38.87 -0.34 -5.21 16 21 C -0.06 -1.56 9.70 -39.66 -0.38 -1.94 16 22 C 0.01 0.10 4.18 -3.82 -0.02 0.08 16 23 C 0.10 1.16 2.56 -26.72 -0.07 1.09 16 24 H 0.10 1.12 4.41 -51.93 -0.23 0.89 16 25 C -0.19 -1.62 9.53 37.16 0.35 -1.26 16 26 O -0.54 -7.37 12.86 -35.23 -0.45 -7.82 16 27 H 0.06 0.69 7.58 -51.93 -0.39 0.30 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.61 5.40 -51.93 -0.28 0.33 16 30 H 0.05 0.64 4.53 -51.93 -0.24 0.41 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.36 4.98 9.12 45.56 0.42 5.39 16 33 H 0.06 1.04 7.67 -51.93 -0.40 0.64 16 34 H 0.02 0.33 7.81 -51.93 -0.41 -0.07 16 35 H 0.08 1.60 7.58 -52.49 -0.40 1.21 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 38 H 0.11 3.04 6.15 -52.48 -0.32 2.72 16 39 H 0.08 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.07 0.83 7.69 -51.93 -0.40 0.43 16 41 H 0.05 0.51 5.35 -51.93 -0.28 0.24 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.37 4.19 9.04 45.56 0.41 4.60 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -31.04 352.57 -8.61 -39.65 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.31 Total: 14.32 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.38 Total: -26.48 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: -0.27 Total: -28.86 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.93 Total: -18.00 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.04 Total: 14.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.04 -8.61 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443335857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.692 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds