Wall clock time and date at job start Tue Mar 31 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47020 * 2 1 4 4 C 1.52998 * 109.47350 * 239.99694 * 2 1 3 5 5 O 1.42895 * 109.47143 * 178.57086 * 4 2 1 6 6 N 1.46901 * 109.46953 * 119.99382 * 2 1 3 7 7 C 1.46896 * 111.00221 * 266.23184 * 6 2 1 8 8 C 1.50699 * 109.47104 * 286.99988 * 7 6 2 9 9 C 1.38639 * 119.74417 * 96.45564 * 8 7 6 10 10 C 1.37619 * 120.24703 * 179.70440 * 9 8 7 11 11 C 1.40716 * 119.74583 * 0.27632 * 10 9 8 12 12 C 1.41395 * 120.24554 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00085 * 342.03961 * 12 11 10 14 14 C 1.39950 * 119.99890 * 162.03704 * 12 11 10 15 15 N 1.30821 * 119.99962 * 330.33422 * 14 12 11 16 16 Si 1.86800 * 119.99664 * 150.33213 * 14 12 11 17 17 H 1.48501 * 109.46885 * 94.99844 * 16 14 12 18 18 H 1.48494 * 109.47028 * 214.99305 * 16 14 12 19 19 H 1.48493 * 109.47233 * 334.99765 * 16 14 12 20 20 C 1.40717 * 119.50880 * 0.02562 * 11 10 9 21 21 C 1.37615 * 119.74992 * 359.97438 * 20 11 10 22 22 C 1.46904 * 110.99777 * 30.18618 * 6 2 1 23 23 C 1.53007 * 109.47042 * 73.23030 * 22 6 2 24 24 H 1.09001 * 109.47213 * 293.99043 * 23 22 6 25 25 C 1.53006 * 109.46737 * 173.98831 * 23 22 6 26 26 O 1.42903 * 109.47015 * 53.99173 * 23 22 6 27 27 H 1.09006 * 109.47585 * 295.56326 * 1 2 3 28 28 H 1.09009 * 109.47133 * 55.55499 * 1 2 3 29 29 H 1.09000 * 109.47455 * 175.55557 * 1 2 3 30 30 H 1.08995 * 109.47185 * 298.57864 * 4 2 1 31 31 H 1.09007 * 109.46654 * 58.57412 * 4 2 1 32 32 H 0.96699 * 113.99948 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.46953 * 167.00713 * 7 6 2 34 34 H 1.08999 * 109.47217 * 47.00743 * 7 6 2 35 35 H 1.08000 * 119.87436 * 359.97438 * 9 8 7 36 36 H 1.07997 * 120.12624 * 180.30171 * 10 9 8 37 37 H 0.97001 * 119.99625 * 180.02562 * 15 14 12 38 38 H 1.08006 * 120.12564 * 180.02562 * 20 11 10 39 39 H 1.07994 * 119.87623 * 180.02562 * 21 20 11 40 40 H 1.08996 * 109.47114 * 193.22892 * 22 6 2 41 41 H 1.08998 * 109.46974 * 313.23433 * 22 6 2 42 42 H 1.08997 * 109.46970 * 60.00021 * 25 23 22 43 43 H 1.09005 * 109.46303 * 179.97438 * 25 23 22 44 44 H 1.08995 * 109.47025 * 300.00215 * 25 23 22 45 45 H 0.96696 * 113.99778 * 59.99837 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 3.4686 -0.6922 -1.2660 6 7 2.0196 -0.6924 1.1995 7 6 2.2801 0.2596 2.2875 8 6 3.5273 1.0468 1.9783 9 6 3.4230 2.2980 1.3903 10 6 4.5549 3.0284 1.1090 11 6 5.8219 2.4982 1.4152 12 6 6.9919 3.2397 1.1312 13 1 6.9534 4.0626 0.4328 14 6 8.1996 2.9074 1.7553 15 7 8.1935 2.3722 2.9490 16 14 9.8204 3.2282 0.8838 17 1 10.3654 4.5392 1.3190 18 1 10.7865 2.1531 1.2240 19 1 9.5977 3.2474 -0.5842 20 6 5.9159 1.2246 2.0061 21 6 4.7706 0.5120 2.2785 22 6 1.0773 -1.7353 1.6269 23 6 1.1539 -2.9189 0.6603 24 1 0.7931 -2.6107 -0.3210 25 6 0.2860 -4.0639 1.1864 26 8 2.5092 -3.3592 0.5528 27 1 -0.3634 0.4435 0.9271 28 1 -0.3634 0.5813 -0.8476 29 1 -0.3634 -1.0245 -0.0796 30 1 1.6977 -1.7560 -1.2365 31 1 1.6559 -0.2224 -2.1390 32 1 3.8619 -1.1320 -2.0322 33 1 2.4165 -0.2849 3.2219 34 1 1.4348 0.9411 2.3841 35 1 2.4495 2.7028 1.1561 36 1 4.4711 4.0049 0.6554 37 1 9.0306 2.1422 3.3817 38 1 6.8833 0.8082 2.2456 39 1 4.8404 -0.4655 2.7324 40 1 1.3362 -2.0693 2.6315 41 1 0.0648 -1.3318 1.6276 42 1 -0.7477 -3.7280 1.2685 43 1 0.3402 -4.9069 0.4976 44 1 0.6468 -4.3720 2.1677 45 1 2.8961 -3.6491 1.3902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443335857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:59 Heat of formation + Delta-G solvation = -92.871269 kcal Electronic energy + Delta-G solvation = -24664.005544 eV Core-core repulsion = 21259.510905 eV Total energy + Delta-G solvation = -3404.494640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56379 -39.12272 -37.55301 -36.71062 -35.53117 -32.97645 -32.16480 -31.11298 -31.00706 -28.40111 -27.19650 -26.24498 -24.53270 -22.84406 -22.47899 -21.67985 -20.52970 -19.18590 -18.07390 -17.67940 -17.15602 -17.04432 -16.42616 -16.05612 -15.76408 -15.57413 -15.20071 -14.93496 -14.76986 -14.43211 -14.23780 -13.75293 -13.54631 -13.34559 -13.30713 -13.15737 -13.06043 -12.82457 -12.73413 -12.65493 -12.43660 -12.31605 -12.13225 -11.93705 -11.69044 -11.42135 -11.32810 -11.19229 -10.83551 -10.69053 -10.40791 -9.25631 -9.20259 -8.84824 -8.70039 -6.22589 1.03424 1.24767 1.36764 1.48293 1.58019 2.20960 2.65111 3.10249 3.54652 3.77072 3.84969 3.93132 4.12791 4.17568 4.28128 4.38360 4.42231 4.48533 4.58897 4.61239 4.62668 4.64249 4.68527 4.70634 4.80690 4.85099 4.93339 4.97992 5.10288 5.11458 5.18282 5.23033 5.26977 5.40412 5.43602 5.56542 5.76761 6.05165 6.15214 6.26200 6.43523 6.45732 6.48220 6.77228 6.99219 7.05044 7.13685 7.17202 8.28240 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.003996 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.196648 B = 7005.143106 C = 7156.603038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.059 0.941 4 C 0.087 3.913 5 O -0.573 6.573 6 N -0.516 5.516 7 C 0.126 3.874 8 C -0.188 4.188 9 C -0.078 4.078 10 C -0.254 4.254 11 C 0.085 3.915 12 C -0.512 4.512 13 H 0.071 0.929 14 C 0.047 3.953 15 N -0.809 5.809 16 Si 0.973 3.027 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.262 1.262 20 C -0.204 4.204 21 C -0.071 4.071 22 C 0.009 3.991 23 C 0.104 3.896 24 H 0.094 0.906 25 C -0.178 4.178 26 O -0.565 6.565 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.376 0.624 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.290 0.710 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -10.807 -3.797 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.037 4.037 3 H 0.078 0.922 4 C 0.009 3.991 5 O -0.377 6.377 6 N -0.239 5.239 7 C 0.000 4.000 8 C -0.189 4.189 9 C -0.097 4.097 10 C -0.274 4.274 11 C 0.082 3.918 12 C -0.540 4.540 13 H 0.089 0.911 14 C -0.171 4.171 15 N -0.433 5.433 16 Si 0.793 3.207 17 H -0.183 1.183 18 H -0.187 1.187 19 H -0.186 1.186 20 C -0.223 4.223 21 C -0.090 4.090 22 C -0.119 4.119 23 C 0.044 3.956 24 H 0.111 0.889 25 C -0.236 4.236 26 O -0.370 6.370 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.223 0.777 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.514 -10.635 -3.748 18.380 hybrid contribution 0.429 0.424 0.068 0.607 sum -14.085 -10.211 -3.681 17.782 Atomic orbital electron populations 1.22325 0.94422 1.03306 1.02857 1.21754 0.93591 0.97725 0.90637 0.92246 1.22452 0.81421 0.99445 0.95821 1.86739 1.20253 1.80981 1.49762 1.61980 1.44983 1.12834 1.04107 1.20659 0.93262 0.92814 0.93304 1.19166 0.94049 0.96037 1.09677 1.20550 0.96254 0.94720 0.98173 1.20991 0.93109 1.00201 1.13097 1.17841 0.92701 0.91818 0.89402 1.19759 0.94137 1.15919 1.24208 0.91111 1.26734 1.04566 0.92130 0.93653 1.69940 1.31128 1.30717 1.11548 0.85361 0.76246 0.79315 0.79813 1.18262 1.18731 1.18565 1.21090 0.97022 0.95941 1.08262 1.20540 0.92632 0.97154 0.98654 1.23171 0.95911 0.93461 0.99352 1.22087 0.82592 0.91952 0.98933 0.88856 1.22443 1.00774 0.98477 1.01873 1.86585 1.27297 1.86202 1.36956 0.91923 0.91004 0.90346 0.92216 0.93889 0.77724 0.91197 0.94919 0.87783 0.89454 0.89931 0.89214 0.88697 0.90797 0.91742 0.90475 0.91835 0.91795 0.77533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 7.78 71.98 0.56 -2.85 16 2 C 0.07 2.07 2.32 44.91 0.10 2.18 16 3 H 0.06 2.12 5.53 -2.39 -0.01 2.10 16 4 C 0.09 2.44 6.38 71.98 0.46 2.90 16 5 O -0.57 -20.64 13.55 -148.98 -2.02 -22.66 16 6 N -0.52 -15.50 3.93 -875.52 -3.44 -18.93 16 7 C 0.13 4.32 5.05 85.56 0.43 4.75 16 8 C -0.19 -8.39 5.06 -19.67 -0.10 -8.49 16 9 C -0.08 -3.66 8.31 22.22 0.18 -3.48 16 10 C -0.25 -13.58 9.80 22.73 0.22 -13.36 16 11 C 0.08 4.94 5.62 -21.29 -0.12 4.82 16 12 C -0.51 -29.63 8.99 23.46 0.21 -29.42 16 13 H 0.07 4.00 7.99 -2.91 -0.02 3.97 16 14 C 0.05 2.48 4.91 85.26 0.42 2.90 16 15 N -0.81 -44.18 11.31 21.83 0.25 -43.93 16 16 Si 0.97 40.01 29.65 68.60 2.03 42.04 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 C -0.20 -11.57 8.79 22.73 0.20 -11.37 16 21 C -0.07 -3.55 9.70 22.22 0.22 -3.34 16 22 C 0.01 0.19 4.18 86.30 0.36 0.55 16 23 C 0.10 2.05 2.56 30.60 0.08 2.13 16 24 H 0.09 1.88 4.41 -2.39 -0.01 1.87 16 25 C -0.18 -2.47 9.53 71.98 0.69 -1.79 16 26 O -0.56 -14.41 12.86 -148.98 -1.92 -16.32 16 27 H 0.06 1.22 7.58 -2.38 -0.02 1.21 16 28 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.08 1.27 5.40 -2.39 -0.01 1.26 16 30 H 0.06 1.52 4.53 -2.39 -0.01 1.51 16 31 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.38 10.36 9.12 -74.06 -0.68 9.68 16 33 H 0.07 2.25 7.67 -2.39 -0.02 2.23 16 34 H 0.03 1.03 7.81 -2.39 -0.02 1.01 16 35 H 0.10 4.23 7.58 -2.91 -0.02 4.21 16 36 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 38 H 0.09 5.32 6.15 -2.91 -0.02 5.30 16 39 H 0.09 4.40 8.06 -2.91 -0.02 4.37 16 40 H 0.07 1.54 7.69 -2.39 -0.02 1.52 16 41 H 0.06 1.18 5.35 -2.39 -0.01 1.17 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.38 8.01 9.04 -74.06 -0.67 7.34 16 Total: -1.00 -69.65 352.57 -1.51 -71.16 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.33 Total: 42.50 kcal Atomic # 6 Polarization: -57.77 SS G_CDS: 3.91 Total: -53.86 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -3.19 Total: -62.86 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -3.93 Total: -38.98 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -69.65 -1.51 -71.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443335857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.714 kcal (2) G-P(sol) polarization free energy of solvation -69.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds