Wall clock time and date at job start Tue Mar 31 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46989 * 2 1 4 4 O 1.42894 * 109.47208 * 120.00305 * 2 1 3 5 5 C 1.53004 * 109.47452 * 240.00665 * 2 1 3 6 6 N 1.46897 * 109.47345 * 174.03581 * 5 2 1 7 7 C 1.46901 * 110.99975 * 200.58167 * 6 5 2 8 8 C 1.50704 * 109.46944 * 159.03457 * 7 6 5 9 9 C 1.38641 * 119.74680 * 293.95310 * 8 7 6 10 10 C 1.37613 * 120.24280 * 179.72514 * 9 8 7 11 11 C 1.40715 * 119.74987 * 0.56339 * 10 9 8 12 12 C 1.41392 * 120.24618 * 179.68599 * 11 10 9 13 13 H 1.07994 * 120.00308 * 30.78013 * 12 11 10 14 14 C 1.39950 * 119.99718 * 210.78394 * 12 11 10 15 15 N 1.30823 * 120.00052 * 8.54856 * 14 12 11 16 16 Si 1.86801 * 119.99818 * 188.55181 * 14 12 11 17 17 H 1.48499 * 109.46949 * 89.99910 * 16 14 12 18 18 H 1.48498 * 109.46911 * 210.00094 * 16 14 12 19 19 H 1.48503 * 109.47024 * 330.00016 * 16 14 12 20 20 C 1.40714 * 119.50710 * 359.70692 * 11 10 9 21 21 C 1.37626 * 119.74877 * 0.02562 * 20 11 10 22 22 C 1.46902 * 110.99767 * 76.62995 * 6 5 2 23 23 H 1.08994 * 109.47368 * 319.60868 * 22 6 5 24 24 C 1.53000 * 109.47070 * 79.61461 * 22 6 5 25 25 C 1.53005 * 109.47021 * 199.60968 * 22 6 5 26 26 O 1.42898 * 109.46773 * 60.83707 * 25 22 6 27 27 H 1.09005 * 109.46728 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47504 * 299.99477 * 1 2 3 29 29 H 1.09005 * 109.47376 * 59.99903 * 1 2 3 30 30 H 0.96699 * 114.00110 * 62.86843 * 4 2 1 31 31 H 1.09001 * 109.47122 * 54.02937 * 5 2 1 32 32 H 1.09008 * 109.46423 * 294.03832 * 5 2 1 33 33 H 1.08996 * 109.47292 * 279.03535 * 7 6 5 34 34 H 1.09001 * 109.46977 * 39.03806 * 7 6 5 35 35 H 1.07997 * 119.87520 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.12461 * 180.27432 * 10 9 8 37 37 H 0.97003 * 120.00040 * 179.97438 * 15 14 12 38 38 H 1.08008 * 120.12785 * 179.97438 * 20 11 10 39 39 H 1.07992 * 119.87573 * 179.97438 * 21 20 11 40 40 H 1.09001 * 109.46665 * 188.84283 * 24 22 6 41 41 H 1.09010 * 109.46981 * 308.83309 * 24 22 6 42 42 H 1.08991 * 109.47722 * 68.83943 * 24 22 6 43 43 H 1.09000 * 109.46938 * 300.83565 * 25 22 6 44 44 H 1.08997 * 109.46860 * 180.83535 * 25 22 6 45 45 H 0.96701 * 113.99675 * 175.00036 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0401 -0.7211 -1.2493 6 7 3.5020 -0.5977 -1.3234 7 6 3.9809 -0.8265 -2.6932 8 6 5.3460 -0.2096 -2.8576 9 6 5.4915 1.1674 -2.7885 10 6 6.7341 1.7411 -2.9316 11 6 7.8576 0.9254 -3.1607 12 6 9.1383 1.5043 -3.3159 13 1 9.3813 2.4232 -2.8032 14 6 10.0909 0.8864 -4.1340 15 7 9.7488 -0.1292 -4.8843 16 14 11.8511 1.5117 -4.1543 17 1 12.6415 0.7990 -3.1188 18 1 12.4488 1.2641 -5.4909 19 1 11.8619 2.9691 -3.8694 20 6 7.6971 -0.4706 -3.2345 21 6 6.4457 -1.0230 -3.0829 22 6 4.1560 -1.5118 -0.3775 23 1 3.6011 -1.5222 0.5605 24 6 4.1848 -2.9226 -0.9688 25 6 5.5876 -1.0384 -0.1178 26 8 5.5600 0.2716 0.4524 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.7576 -1.6071 1.2110 31 1 1.5921 -0.2726 -2.1361 32 1 1.7665 -1.7750 -1.1976 33 1 4.0412 -1.8981 -2.8828 34 1 3.2885 -0.3706 -3.4010 35 1 4.6270 1.7918 -2.6178 36 1 6.8459 2.8137 -2.8731 37 1 10.4090 -0.5572 -5.4516 38 1 8.5525 -1.1061 -3.4104 39 1 6.3201 -2.0941 -3.1397 40 1 4.5247 -3.6276 -0.2100 41 1 3.1833 -3.1988 -1.2987 42 1 4.8669 -2.9467 -1.8186 43 1 6.1384 -1.0138 -1.0582 44 1 6.0777 -1.7249 0.5725 45 1 6.4292 0.6050 0.7141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443335858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:02 Heat of formation + Delta-G solvation = -70.489016 kcal Electronic energy + Delta-G solvation = -24846.816584 eV Core-core repulsion = 21443.292512 eV Total energy + Delta-G solvation = -3403.524072 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.39989 -37.60409 -36.41200 -35.17757 -33.56628 -31.88741 -30.73219 -29.84667 -29.04296 -26.99812 -25.85529 -24.70351 -23.00836 -21.56483 -20.89763 -20.26764 -18.99492 -17.19985 -16.51688 -16.48336 -16.23310 -15.30625 -15.28530 -14.75007 -14.53842 -13.89816 -13.82757 -13.41890 -13.30413 -12.96795 -12.62051 -12.54596 -12.21848 -12.16934 -11.92981 -11.83940 -11.79576 -11.59240 -11.23625 -11.11478 -11.00843 -10.83672 -10.73843 -10.47385 -10.39721 -10.27813 -9.62788 -9.39550 -9.28599 -9.23492 -8.89616 -7.72720 -7.29904 -7.07715 -6.63104 -4.30775 2.79127 3.09942 3.12616 3.14479 3.23715 3.99065 4.18952 4.42922 4.74551 4.82270 4.94806 5.11834 5.21959 5.34165 5.41024 5.55794 5.59584 5.68847 5.73035 5.84856 5.85934 5.90702 5.96859 5.98215 6.14693 6.18904 6.22450 6.33469 6.43444 6.44394 6.55562 6.77638 7.01745 7.16249 7.31097 7.43859 7.56308 7.59623 7.68416 7.70982 7.95645 8.12936 8.22276 8.38984 8.43105 8.71037 8.97862 9.03997 10.31082 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.003857 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.232497 B = 7258.265671 C = 7298.201901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.109 3.891 3 H 0.107 0.893 4 O -0.549 6.549 5 C 0.021 3.979 6 N -0.506 5.506 7 C 0.103 3.897 8 C -0.187 4.187 9 C -0.056 4.056 10 C -0.220 4.220 11 C 0.111 3.889 12 C -0.467 4.467 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.809 5.809 16 Si 0.909 3.091 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.158 4.158 21 C -0.106 4.106 22 C 0.075 3.925 23 H 0.103 0.897 24 C -0.186 4.186 25 C 0.069 3.931 26 O -0.551 6.551 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.363 0.637 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.277 0.723 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.020 0.980 45 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.877 -4.895 6.557 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.050 3.950 3 H 0.125 0.875 4 O -0.354 6.354 5 C -0.108 4.108 6 N -0.229 5.229 7 C -0.023 4.023 8 C -0.188 4.188 9 C -0.075 4.075 10 C -0.239 4.239 11 C 0.108 3.892 12 C -0.498 4.498 13 H 0.092 0.908 14 C -0.142 4.142 15 N -0.436 5.436 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.177 4.177 21 C -0.125 4.125 22 C -0.034 4.034 23 H 0.121 0.879 24 C -0.245 4.245 25 C -0.009 4.009 26 O -0.353 6.353 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.209 0.791 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.038 0.962 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -12.063 -4.044 6.505 14.290 hybrid contribution 0.976 -1.170 -0.548 1.619 sum -11.087 -5.214 5.957 13.623 Atomic orbital electron populations 1.22489 0.97011 1.02005 1.02621 1.21974 0.91262 0.97823 0.83965 0.87497 1.86693 1.78371 1.26502 1.43828 1.22856 0.90591 0.98278 0.99096 1.62160 1.02358 1.52331 1.06043 1.21010 0.95427 0.97710 0.88178 1.18829 0.92675 0.93580 1.13758 1.20213 0.95807 0.93581 0.97884 1.21044 0.92668 0.97617 1.12620 1.17598 0.92234 0.91469 0.87858 1.19558 0.96602 1.08384 1.25253 0.90771 1.25841 1.00485 0.94046 0.93823 1.69788 1.35413 1.18899 1.19452 0.86309 0.82014 0.80207 0.78099 1.19514 1.20448 1.18766 1.21295 0.95630 0.95477 1.05302 1.20484 0.93521 0.96557 1.01947 1.21989 0.96006 0.88312 0.97053 0.87902 1.22427 1.01647 0.98225 1.02205 1.22614 0.96059 0.83623 0.98619 1.86511 1.33205 1.32345 1.83286 0.92812 0.91877 0.91671 0.79059 0.90571 0.95143 0.94560 0.92418 0.89490 0.89314 0.91224 0.86601 0.90051 0.92524 0.92951 0.91394 0.89735 0.96157 0.79026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.55 37.16 0.35 -1.28 16 2 C 0.11 1.29 3.81 -26.73 -0.10 1.19 16 3 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 4 O -0.55 -6.93 10.68 -35.23 -0.38 -7.31 16 5 C 0.02 0.26 4.70 -3.82 -0.02 0.24 16 6 N -0.51 -7.99 4.14 -228.08 -0.94 -8.93 16 7 C 0.10 1.78 4.83 -4.97 -0.02 1.75 16 8 C -0.19 -3.89 3.51 -104.33 -0.37 -4.26 16 9 C -0.06 -1.26 9.64 -39.66 -0.38 -1.64 16 10 C -0.22 -5.39 9.80 -38.87 -0.38 -5.77 16 11 C 0.11 2.90 5.53 -106.83 -0.59 2.31 16 12 C -0.47 -12.42 9.06 -37.74 -0.34 -12.76 16 13 H 0.07 1.91 7.86 -52.49 -0.41 1.50 16 14 C 0.07 1.86 5.28 -17.34 -0.09 1.77 16 15 N -0.81 -21.07 10.86 55.55 0.60 -20.47 16 16 Si 0.91 18.98 29.57 -169.99 -5.03 13.95 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 20 C -0.16 -3.98 8.65 -38.87 -0.34 -4.31 16 21 C -0.11 -2.36 7.16 -39.66 -0.28 -2.64 16 22 C 0.07 1.14 2.42 -67.71 -0.16 0.98 16 23 H 0.10 1.53 4.67 -51.93 -0.24 1.29 16 24 C -0.19 -2.47 7.96 37.16 0.30 -2.18 16 25 C 0.07 1.21 6.05 37.16 0.22 1.43 16 26 O -0.55 -10.34 13.54 -35.23 -0.48 -10.82 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.36 3.27 8.65 45.56 0.39 3.66 16 31 H 0.08 0.91 7.57 -51.93 -0.39 0.52 16 32 H 0.03 0.34 6.72 -51.92 -0.35 -0.01 16 33 H 0.04 0.60 5.08 -51.93 -0.26 0.33 16 34 H 0.06 0.96 7.56 -51.93 -0.39 0.57 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 37 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 38 H 0.12 3.07 6.30 -52.48 -0.33 2.74 16 39 H 0.08 1.65 7.04 -52.49 -0.37 1.28 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.62 6.86 -51.92 -0.36 0.26 16 42 H 0.07 1.01 5.43 -51.93 -0.28 0.72 16 43 H 0.08 1.68 3.51 -51.93 -0.18 1.50 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.37 5.87 9.12 45.56 0.42 6.29 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -29.01 347.69 -8.47 -37.48 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -5.28 Total: 16.03 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -2.21 Total: -25.17 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: -0.34 Total: -29.40 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.85 Total: -18.13 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.01 -8.47 -37.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443335858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.012 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds