Wall clock time and date at job start Tue Mar 31 2020 06:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46989 * 2 1 4 4 O 1.42894 * 109.47208 * 120.00305 * 2 1 3 5 5 C 1.53004 * 109.47452 * 240.00665 * 2 1 3 6 6 N 1.46897 * 109.47345 * 174.03581 * 5 2 1 7 7 C 1.46901 * 110.99975 * 200.58167 * 6 5 2 8 8 C 1.50704 * 109.46944 * 159.03457 * 7 6 5 9 9 C 1.38641 * 119.74680 * 293.95310 * 8 7 6 10 10 C 1.37613 * 120.24280 * 179.72514 * 9 8 7 11 11 C 1.40715 * 119.74987 * 0.56339 * 10 9 8 12 12 C 1.41392 * 120.24618 * 179.68599 * 11 10 9 13 13 H 1.07994 * 120.00308 * 30.78013 * 12 11 10 14 14 C 1.39950 * 119.99718 * 210.78394 * 12 11 10 15 15 N 1.30823 * 120.00052 * 8.54856 * 14 12 11 16 16 Si 1.86801 * 119.99818 * 188.55181 * 14 12 11 17 17 H 1.48499 * 109.46949 * 89.99910 * 16 14 12 18 18 H 1.48498 * 109.46911 * 210.00094 * 16 14 12 19 19 H 1.48503 * 109.47024 * 330.00016 * 16 14 12 20 20 C 1.40714 * 119.50710 * 359.70692 * 11 10 9 21 21 C 1.37626 * 119.74877 * 0.02562 * 20 11 10 22 22 C 1.46902 * 110.99767 * 76.62995 * 6 5 2 23 23 H 1.08994 * 109.47368 * 319.60868 * 22 6 5 24 24 C 1.53000 * 109.47070 * 79.61461 * 22 6 5 25 25 C 1.53005 * 109.47021 * 199.60968 * 22 6 5 26 26 O 1.42898 * 109.46773 * 60.83707 * 25 22 6 27 27 H 1.09005 * 109.46728 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47504 * 299.99477 * 1 2 3 29 29 H 1.09005 * 109.47376 * 59.99903 * 1 2 3 30 30 H 0.96699 * 114.00110 * 62.86843 * 4 2 1 31 31 H 1.09001 * 109.47122 * 54.02937 * 5 2 1 32 32 H 1.09008 * 109.46423 * 294.03832 * 5 2 1 33 33 H 1.08996 * 109.47292 * 279.03535 * 7 6 5 34 34 H 1.09001 * 109.46977 * 39.03806 * 7 6 5 35 35 H 1.07997 * 119.87520 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.12461 * 180.27432 * 10 9 8 37 37 H 0.97003 * 120.00040 * 179.97438 * 15 14 12 38 38 H 1.08008 * 120.12785 * 179.97438 * 20 11 10 39 39 H 1.07992 * 119.87573 * 179.97438 * 21 20 11 40 40 H 1.09001 * 109.46665 * 188.84283 * 24 22 6 41 41 H 1.09010 * 109.46981 * 308.83309 * 24 22 6 42 42 H 1.08991 * 109.47722 * 68.83943 * 24 22 6 43 43 H 1.09000 * 109.46938 * 300.83565 * 25 22 6 44 44 H 1.08997 * 109.46860 * 180.83535 * 25 22 6 45 45 H 0.96701 * 113.99675 * 175.00036 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0401 -0.7211 -1.2493 6 7 3.5020 -0.5977 -1.3234 7 6 3.9809 -0.8265 -2.6932 8 6 5.3460 -0.2096 -2.8576 9 6 5.4915 1.1674 -2.7885 10 6 6.7341 1.7411 -2.9316 11 6 7.8576 0.9254 -3.1607 12 6 9.1383 1.5043 -3.3159 13 1 9.3813 2.4232 -2.8032 14 6 10.0909 0.8864 -4.1340 15 7 9.7488 -0.1292 -4.8843 16 14 11.8511 1.5117 -4.1543 17 1 12.6415 0.7990 -3.1188 18 1 12.4488 1.2641 -5.4909 19 1 11.8619 2.9691 -3.8694 20 6 7.6971 -0.4706 -3.2345 21 6 6.4457 -1.0230 -3.0829 22 6 4.1560 -1.5118 -0.3775 23 1 3.6011 -1.5222 0.5605 24 6 4.1848 -2.9226 -0.9688 25 6 5.5876 -1.0384 -0.1178 26 8 5.5600 0.2716 0.4524 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.7576 -1.6071 1.2110 31 1 1.5921 -0.2726 -2.1361 32 1 1.7665 -1.7750 -1.1976 33 1 4.0412 -1.8981 -2.8828 34 1 3.2885 -0.3706 -3.4010 35 1 4.6270 1.7918 -2.6178 36 1 6.8459 2.8137 -2.8731 37 1 10.4090 -0.5572 -5.4516 38 1 8.5525 -1.1061 -3.4104 39 1 6.3201 -2.0941 -3.1397 40 1 4.5247 -3.6276 -0.2100 41 1 3.1833 -3.1988 -1.2987 42 1 4.8669 -2.9467 -1.8186 43 1 6.1384 -1.0138 -1.0582 44 1 6.0777 -1.7249 0.5725 45 1 6.4292 0.6050 0.7141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443335858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:01 Heat of formation + Delta-G solvation = -91.754096 kcal Electronic energy + Delta-G solvation = -24847.738707 eV Core-core repulsion = 21443.292512 eV Total energy + Delta-G solvation = -3404.446195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69598 -39.08416 -37.72679 -36.55638 -35.38716 -32.89089 -32.35119 -31.31421 -30.64596 -28.53866 -27.05332 -26.09654 -24.48038 -22.75873 -22.56247 -21.85297 -20.38187 -19.12720 -17.93782 -17.61538 -17.22122 -17.08059 -16.39298 -16.05879 -15.96361 -15.55843 -15.08460 -14.98418 -14.55298 -14.38323 -14.21317 -13.75843 -13.72595 -13.37253 -13.28766 -13.13193 -12.94380 -12.90104 -12.73666 -12.60385 -12.45279 -12.23575 -12.10033 -11.96246 -11.68905 -11.53947 -11.33480 -11.13881 -11.04083 -10.63359 -10.38223 -9.16224 -8.93983 -8.88133 -8.51358 -6.29111 1.01483 1.24763 1.38482 1.50166 1.53589 2.24127 2.77143 3.12926 3.54510 3.61962 3.82202 4.02196 4.18473 4.22557 4.35363 4.40848 4.41171 4.53386 4.60592 4.62765 4.69481 4.73825 4.75682 4.78643 4.81424 4.93776 4.98721 5.04558 5.10257 5.20846 5.25091 5.26973 5.37545 5.45529 5.47514 5.56768 5.79927 6.04363 6.18447 6.23407 6.46247 6.48966 6.50165 6.78602 6.94387 7.03262 7.07281 7.11761 8.44372 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.003857 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.232497 B = 7258.265671 C = 7298.201901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.113 3.887 3 H 0.077 0.923 4 O -0.569 6.569 5 C 0.023 3.977 6 N -0.524 5.524 7 C 0.106 3.894 8 C -0.164 4.164 9 C -0.061 4.061 10 C -0.234 4.234 11 C 0.081 3.919 12 C -0.507 4.507 13 H 0.067 0.933 14 C 0.033 3.967 15 N -0.841 5.841 16 Si 0.980 3.020 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.262 1.262 20 C -0.175 4.175 21 C -0.101 4.101 22 C 0.077 3.923 23 H 0.112 0.888 24 C -0.180 4.180 25 C 0.062 3.938 26 O -0.567 6.567 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.380 0.620 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.283 0.717 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.032 0.968 45 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.744 -6.209 6.953 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.053 3.947 3 H 0.095 0.905 4 O -0.376 6.376 5 C -0.105 4.105 6 N -0.247 5.247 7 C -0.020 4.020 8 C -0.166 4.166 9 C -0.079 4.079 10 C -0.254 4.254 11 C 0.079 3.921 12 C -0.537 4.537 13 H 0.085 0.915 14 C -0.179 4.179 15 N -0.468 5.468 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.186 1.186 20 C -0.195 4.195 21 C -0.120 4.120 22 C -0.031 4.031 23 H 0.129 0.871 24 C -0.238 4.238 25 C -0.015 4.015 26 O -0.371 6.371 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.228 0.772 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -13.956 -5.368 6.912 16.473 hybrid contribution 1.394 -0.801 -0.583 1.711 sum -12.561 -6.169 6.329 15.359 Atomic orbital electron populations 1.22375 0.94482 1.03289 1.02955 1.21855 0.93061 0.96185 0.83570 0.90504 1.86648 1.78868 1.27985 1.44087 1.22922 0.88095 0.99805 0.99696 1.61992 1.04634 1.53176 1.04920 1.20951 0.93149 0.98280 0.89664 1.19220 0.94406 0.92875 1.10051 1.20375 0.95234 0.94607 0.97712 1.21156 0.93381 0.97523 1.13292 1.17849 0.92846 0.92256 0.89186 1.19764 0.97964 1.09074 1.26948 0.91465 1.26629 1.04364 0.94073 0.92860 1.69854 1.36890 1.20000 1.20096 0.85234 0.76615 0.79502 0.78493 1.18748 1.19438 1.18626 1.21204 0.96349 0.95012 1.06914 1.20658 0.92755 0.97749 1.00815 1.22008 0.94387 0.89234 0.97513 0.87106 1.22357 1.02497 0.97091 1.01861 1.22720 0.97828 0.83405 0.97585 1.86486 1.34070 1.33247 1.83344 0.91011 0.92049 0.90882 0.77151 0.89780 0.92887 0.93137 0.91283 0.88363 0.89681 0.90658 0.88602 0.88032 0.91019 0.90905 0.93071 0.92271 0.94999 0.78267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.55 71.98 0.69 -1.86 16 2 C 0.11 2.40 3.81 30.60 0.12 2.51 16 3 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 4 O -0.57 -12.92 10.68 -148.98 -1.59 -14.51 16 5 C 0.02 0.49 4.70 86.31 0.41 0.89 16 6 N -0.52 -15.23 4.14 -875.50 -3.63 -18.85 16 7 C 0.11 3.39 4.83 85.56 0.41 3.80 16 8 C -0.16 -6.70 3.51 -19.67 -0.07 -6.77 16 9 C -0.06 -2.72 9.64 22.22 0.21 -2.51 16 10 C -0.23 -11.87 9.80 22.73 0.22 -11.64 16 11 C 0.08 4.41 5.53 -21.29 -0.12 4.30 16 12 C -0.51 -28.18 9.06 23.46 0.21 -27.97 16 13 H 0.07 3.66 7.86 -2.91 -0.02 3.64 16 14 C 0.03 1.71 5.28 85.26 0.45 2.16 16 15 N -0.84 -45.16 10.86 21.83 0.24 -44.92 16 16 Si 0.98 39.75 29.57 68.60 2.03 41.78 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 C -0.18 -9.14 8.65 22.73 0.20 -8.94 16 21 C -0.10 -4.48 7.16 22.22 0.16 -4.32 16 22 C 0.08 2.15 2.42 44.92 0.11 2.26 16 23 H 0.11 2.99 4.67 -2.39 -0.01 2.97 16 24 C -0.18 -4.15 7.96 71.98 0.57 -3.58 16 25 C 0.06 2.14 6.05 71.98 0.44 2.57 16 26 O -0.57 -21.23 13.54 -148.98 -2.02 -23.25 16 27 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.38 5.54 8.65 -74.06 -0.64 4.90 16 31 H 0.08 1.69 7.57 -2.39 -0.02 1.67 16 32 H 0.05 0.93 6.72 -2.38 -0.02 0.91 16 33 H 0.05 1.49 5.08 -2.39 -0.01 1.48 16 34 H 0.07 2.08 7.56 -2.39 -0.02 2.06 16 35 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.08 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 38 H 0.10 5.33 6.30 -2.91 -0.02 5.31 16 39 H 0.10 4.04 7.04 -2.91 -0.02 4.02 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.39 6.86 -2.38 -0.02 1.37 16 42 H 0.05 1.37 5.43 -2.39 -0.01 1.35 16 43 H 0.06 2.33 3.51 -2.39 -0.01 2.32 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.37 12.24 9.12 -74.06 -0.68 11.57 16 Total: -1.00 -64.45 347.69 -1.26 -65.72 By element: Atomic # 1 Polarization: 43.43 SS G_CDS: -0.30 Total: 43.13 kcal Atomic # 6 Polarization: -53.11 SS G_CDS: 4.01 Total: -49.10 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -3.39 Total: -63.77 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -3.61 Total: -37.75 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -64.45 -1.26 -65.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443335858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.038 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds