Wall clock time and date at job start Tue Mar 31 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38267 * 119.97478 * 2 1 4 4 C 1.38167 * 120.02275 * 180.29970 * 3 2 1 5 5 C 1.38485 * 119.97633 * 359.42870 * 4 3 2 6 6 F 1.35105 * 120.02561 * 180.29815 * 5 4 3 7 7 C 1.38440 * 119.94798 * 0.27030 * 5 4 3 8 8 C 1.50693 * 120.01241 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.47075 * 285.00109 * 8 7 5 10 10 C 1.46911 * 110.99802 * 293.95521 * 9 8 7 11 11 C 1.46899 * 111.00283 * 170.00331 * 9 8 7 12 12 C 1.52992 * 109.47170 * 209.37662 * 11 9 8 13 13 C 1.53001 * 109.47591 * 300.41317 * 12 11 9 14 14 C 1.53004 * 109.47392 * 60.41384 * 12 11 9 15 15 C 1.53006 * 109.47167 * 180.40966 * 12 11 9 16 16 C 1.50698 * 109.47076 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00211 * 0.02562 * 16 15 12 18 18 C 1.37877 * 120.00046 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99732 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00330 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47487 * 89.99867 * 20 18 16 22 22 H 1.48500 * 109.47364 * 210.00363 * 20 18 16 23 23 H 1.48499 * 109.47030 * 329.99940 * 20 18 16 24 24 C 1.38218 * 119.97039 * 179.70163 * 2 1 3 25 25 H 1.09005 * 109.46889 * 270.30171 * 1 2 3 26 26 H 1.09007 * 109.47106 * 30.29367 * 1 2 3 27 27 H 1.08992 * 109.47643 * 150.30034 * 1 2 3 28 28 H 1.07998 * 119.98760 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.01438 * 179.69760 * 4 3 2 30 30 H 1.08996 * 109.47542 * 44.99870 * 8 7 5 31 31 H 1.08998 * 109.46947 * 165.00668 * 8 7 5 32 32 H 1.08997 * 109.46778 * 67.39974 * 10 9 8 33 33 H 1.09006 * 109.46703 * 187.39383 * 10 9 8 34 34 H 1.08990 * 109.47150 * 307.39657 * 10 9 8 35 35 H 1.08998 * 109.46807 * 329.38023 * 11 9 8 36 36 H 1.08999 * 109.47233 * 89.37507 * 11 9 8 37 37 H 1.08990 * 109.47126 * 68.64281 * 13 12 11 38 38 H 1.09002 * 109.46998 * 188.64982 * 13 12 11 39 39 H 1.09002 * 109.46458 * 308.64648 * 13 12 11 40 40 H 1.08998 * 109.47022 * 59.99537 * 14 12 11 41 41 H 1.08989 * 109.47547 * 180.02562 * 14 12 11 42 42 H 1.09006 * 109.46474 * 300.00076 * 14 12 11 43 43 H 1.08998 * 109.47112 * 300.00381 * 15 12 11 44 44 H 1.09000 * 109.46878 * 60.00357 * 15 12 11 45 45 H 0.97005 * 120.00103 * 179.97438 * 19 18 16 46 46 H 1.07996 * 119.99493 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2725 -0.0001 -0.0006 6 9 5.6235 -0.0001 -0.0006 7 6 3.5797 -1.1987 0.0057 8 6 4.3323 -2.5042 0.0125 9 7 4.8874 -2.7564 -1.3240 10 6 3.8168 -2.9752 -2.3060 11 6 5.8206 -3.8907 -1.3012 12 6 6.8812 -3.7004 -2.3872 13 6 6.2011 -3.6161 -3.7552 14 6 7.6563 -2.4081 -2.1225 15 6 7.8472 -4.8869 -2.3702 16 6 8.8923 -4.6992 -3.4395 17 1 8.8700 -3.8213 -4.0682 18 6 9.8774 -5.6477 -3.6147 19 7 9.9048 -6.7165 -2.8488 20 14 11.1734 -5.4148 -4.9397 21 1 12.3313 -4.6761 -4.3753 22 1 11.6242 -6.7421 -5.4300 23 1 10.5947 -4.6411 -6.0674 24 6 2.1975 -1.1973 0.0062 25 1 -0.3633 0.0054 1.0277 26 1 -0.3634 0.8874 -0.5184 27 1 -0.3634 -0.8926 -0.5091 28 1 1.6572 2.1327 0.0004 29 1 4.1190 2.1346 -0.0112 30 1 5.1434 -2.4524 0.7388 31 1 3.6538 -3.3133 0.2826 32 1 3.2607 -2.0488 -2.4495 33 1 4.2526 -3.2881 -3.2549 34 1 3.1431 -3.7508 -1.9422 35 1 6.3045 -3.9434 -0.3259 36 1 5.2734 -4.8151 -1.4856 37 1 5.6325 -2.6887 -3.8217 38 1 6.9583 -3.6352 -4.5391 39 1 5.5282 -4.4646 -3.8792 40 1 8.1408 -2.4681 -1.1480 41 1 8.4115 -2.2723 -2.8965 42 1 6.9680 -1.5628 -2.1347 43 1 8.3317 -4.9470 -1.3956 44 1 7.2951 -5.8076 -2.5588 45 1 10.5977 -7.3841 -2.9723 46 1 1.6570 -2.1323 0.0107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446972962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:17 Heat of formation + Delta-G solvation = -29.613831 kcal Electronic energy + Delta-G solvation = -24105.798553 eV Core-core repulsion = 20716.419751 eV Total energy + Delta-G solvation = -3389.378802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.67824 -39.58753 -38.10686 -35.18712 -32.70924 -32.20484 -31.36746 -27.95202 -27.06916 -26.78122 -26.15816 -25.80497 -23.38076 -22.62167 -21.75015 -20.30695 -17.87972 -17.45453 -16.65051 -16.14744 -15.71202 -15.41475 -15.02586 -14.85484 -14.33987 -14.24695 -14.01819 -13.83822 -13.44266 -13.05094 -12.96154 -12.78312 -12.64200 -12.30256 -12.10086 -12.00237 -11.95105 -11.69242 -11.29290 -11.16202 -11.01747 -10.82078 -10.69597 -10.56824 -10.30903 -10.28984 -9.93333 -9.52978 -9.12594 -8.89603 -8.81166 -8.50381 -8.27041 -7.92507 -5.91906 -3.91362 1.05389 1.08308 3.36668 3.39477 3.42942 3.46139 4.27930 4.29279 4.52720 4.56928 4.61285 4.70477 5.00323 5.01664 5.31199 5.32577 5.40267 5.43979 5.50949 5.55276 5.60980 5.66231 5.77505 5.84628 5.96182 5.97352 6.09434 6.11182 6.19217 6.22260 6.30882 6.32991 6.41071 6.62968 6.79750 6.81903 6.88619 6.94805 7.28654 7.30376 7.33171 7.42827 7.54059 7.76494 7.92035 8.09107 8.54389 9.14091 9.71059 11.19871 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.003270 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.781413 B = 8559.736809 C = 8865.522568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C -0.096 4.096 4 C -0.157 4.157 5 C 0.121 3.879 6 F -0.127 7.127 7 C -0.103 4.103 8 C 0.093 3.907 9 N -0.527 5.527 10 C 0.005 3.995 11 C 0.066 3.934 12 C -0.051 4.051 13 C -0.132 4.132 14 C -0.114 4.114 15 C 0.033 3.967 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.088 4.088 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.017 0.983 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.014 0.986 44 H 0.012 0.988 45 H 0.258 0.742 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.017 13.595 6.831 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.114 4.114 4 C -0.175 4.175 5 C 0.101 3.899 6 F -0.105 7.105 7 C -0.104 4.104 8 C -0.035 4.035 9 N -0.250 5.250 10 C -0.142 4.142 11 C -0.061 4.061 12 C -0.051 4.051 13 C -0.188 4.188 14 C -0.172 4.172 15 C -0.004 4.004 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.106 4.106 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.030 0.970 45 H 0.068 0.932 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.596 13.829 6.715 24.127 hybrid contribution 0.601 -0.728 -0.401 1.026 sum -17.994 13.101 6.314 23.136 Atomic orbital electron populations 1.20753 0.90914 1.02840 1.02272 1.19886 0.96290 0.92923 1.01316 1.20819 0.93050 0.97819 0.99748 1.21143 0.94989 0.97132 1.04274 1.17510 0.77390 0.93657 1.01375 1.91549 1.28337 1.97287 1.93356 1.19912 0.93880 0.94503 1.02151 1.21034 0.97604 0.92127 0.92727 1.61986 1.16351 1.42224 1.04420 1.22914 0.93507 0.99646 0.98175 1.22352 0.93616 0.89734 1.00409 1.20551 0.94005 0.98032 0.92537 1.21982 0.99716 0.98751 0.98385 1.21576 0.98894 0.96295 1.00388 1.19129 0.92888 0.91379 0.97026 1.21248 1.10528 1.05635 1.16820 0.92254 1.25014 0.97935 0.95438 0.96249 1.69971 1.34273 1.10319 1.39331 0.86671 0.82210 0.77246 0.82339 1.20808 1.21441 1.19935 1.20822 0.92474 0.97929 0.99408 0.91236 0.91531 0.91508 0.85446 0.84929 0.89753 0.94001 0.92396 0.88843 0.96441 0.91794 0.94770 0.93633 0.91857 0.94451 0.94530 0.92888 0.93636 0.96814 0.97008 0.93231 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.10 -0.94 5.88 -104.62 -0.62 -1.55 16 3 C -0.10 -0.87 9.70 -39.60 -0.38 -1.25 16 4 C -0.16 -1.67 10.03 -39.52 -0.40 -2.07 16 5 C 0.12 1.58 7.25 -39.42 -0.29 1.29 16 6 F -0.13 -1.95 16.76 2.25 0.04 -1.91 16 7 C -0.10 -1.28 4.45 -104.56 -0.47 -1.74 16 8 C 0.09 1.24 4.71 -4.98 -0.02 1.22 16 9 N -0.53 -8.11 3.77 -244.38 -0.92 -9.03 16 10 C 0.01 0.08 8.47 60.07 0.51 0.58 16 11 C 0.07 1.17 4.24 -3.83 -0.02 1.16 16 12 C -0.05 -1.05 0.60 -154.51 -0.09 -1.14 16 13 C -0.13 -2.55 6.67 37.16 0.25 -2.30 16 14 C -0.11 -2.34 8.06 37.16 0.30 -2.04 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 16 C -0.50 -14.02 7.53 -34.44 -0.26 -14.28 16 17 H 0.06 1.62 5.72 -52.49 -0.30 1.32 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 24 C -0.09 -0.90 9.01 -39.59 -0.36 -1.26 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.35 8.09 -51.92 -0.42 -0.07 16 27 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 29 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.08 1.18 7.73 -51.93 -0.40 0.78 16 31 H 0.04 0.51 7.85 -51.93 -0.41 0.10 16 32 H 0.06 0.77 7.33 -51.93 -0.38 0.39 16 33 H 0.09 1.38 3.89 -51.93 -0.20 1.18 16 34 H 0.02 0.22 8.03 -51.93 -0.42 -0.19 16 35 H 0.06 1.15 7.57 -51.93 -0.39 0.75 16 36 H 0.03 0.61 7.85 -51.93 -0.41 0.20 16 37 H 0.04 0.80 6.21 -51.93 -0.32 0.47 16 38 H 0.06 1.35 6.38 -51.93 -0.33 1.01 16 39 H 0.04 0.69 7.47 -51.93 -0.39 0.30 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 42 H 0.04 0.88 7.62 -51.93 -0.40 0.48 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.13 1.11 8.00 -52.49 -0.42 0.69 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -30.40 362.21 -9.02 -39.42 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.62 Total: -2.85 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.69 Total: -21.53 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.18 Total: -35.50 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.40 -9.02 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446972962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.807 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds