Wall clock time and date at job start Tue Mar 31 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38267 * 119.97478 * 2 1 4 4 C 1.38167 * 120.02275 * 180.29970 * 3 2 1 5 5 C 1.38485 * 119.97633 * 359.42870 * 4 3 2 6 6 F 1.35105 * 120.02561 * 180.29815 * 5 4 3 7 7 C 1.38440 * 119.94798 * 0.27030 * 5 4 3 8 8 C 1.50693 * 120.01241 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.47075 * 285.00109 * 8 7 5 10 10 C 1.46911 * 110.99802 * 293.95521 * 9 8 7 11 11 C 1.46899 * 111.00283 * 170.00331 * 9 8 7 12 12 C 1.52992 * 109.47170 * 209.37662 * 11 9 8 13 13 C 1.53001 * 109.47591 * 300.41317 * 12 11 9 14 14 C 1.53004 * 109.47392 * 60.41384 * 12 11 9 15 15 C 1.53006 * 109.47167 * 180.40966 * 12 11 9 16 16 C 1.50698 * 109.47076 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00211 * 0.02562 * 16 15 12 18 18 C 1.37877 * 120.00046 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99732 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00330 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47487 * 89.99867 * 20 18 16 22 22 H 1.48500 * 109.47364 * 210.00363 * 20 18 16 23 23 H 1.48499 * 109.47030 * 329.99940 * 20 18 16 24 24 C 1.38218 * 119.97039 * 179.70163 * 2 1 3 25 25 H 1.09005 * 109.46889 * 270.30171 * 1 2 3 26 26 H 1.09007 * 109.47106 * 30.29367 * 1 2 3 27 27 H 1.08992 * 109.47643 * 150.30034 * 1 2 3 28 28 H 1.07998 * 119.98760 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.01438 * 179.69760 * 4 3 2 30 30 H 1.08996 * 109.47542 * 44.99870 * 8 7 5 31 31 H 1.08998 * 109.46947 * 165.00668 * 8 7 5 32 32 H 1.08997 * 109.46778 * 67.39974 * 10 9 8 33 33 H 1.09006 * 109.46703 * 187.39383 * 10 9 8 34 34 H 1.08990 * 109.47150 * 307.39657 * 10 9 8 35 35 H 1.08998 * 109.46807 * 329.38023 * 11 9 8 36 36 H 1.08999 * 109.47233 * 89.37507 * 11 9 8 37 37 H 1.08990 * 109.47126 * 68.64281 * 13 12 11 38 38 H 1.09002 * 109.46998 * 188.64982 * 13 12 11 39 39 H 1.09002 * 109.46458 * 308.64648 * 13 12 11 40 40 H 1.08998 * 109.47022 * 59.99537 * 14 12 11 41 41 H 1.08989 * 109.47547 * 180.02562 * 14 12 11 42 42 H 1.09006 * 109.46474 * 300.00076 * 14 12 11 43 43 H 1.08998 * 109.47112 * 300.00381 * 15 12 11 44 44 H 1.09000 * 109.46878 * 60.00357 * 15 12 11 45 45 H 0.97005 * 120.00103 * 179.97438 * 19 18 16 46 46 H 1.07996 * 119.99493 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2725 -0.0001 -0.0006 6 9 5.6235 -0.0001 -0.0006 7 6 3.5797 -1.1987 0.0057 8 6 4.3323 -2.5042 0.0125 9 7 4.8874 -2.7564 -1.3240 10 6 3.8168 -2.9752 -2.3060 11 6 5.8206 -3.8907 -1.3012 12 6 6.8812 -3.7004 -2.3872 13 6 6.2011 -3.6161 -3.7552 14 6 7.6563 -2.4081 -2.1225 15 6 7.8472 -4.8869 -2.3702 16 6 8.8923 -4.6992 -3.4395 17 1 8.8700 -3.8213 -4.0682 18 6 9.8774 -5.6477 -3.6147 19 7 9.9048 -6.7165 -2.8488 20 14 11.1734 -5.4148 -4.9397 21 1 12.3313 -4.6761 -4.3753 22 1 11.6242 -6.7421 -5.4300 23 1 10.5947 -4.6411 -6.0674 24 6 2.1975 -1.1973 0.0062 25 1 -0.3633 0.0054 1.0277 26 1 -0.3634 0.8874 -0.5184 27 1 -0.3634 -0.8926 -0.5091 28 1 1.6572 2.1327 0.0004 29 1 4.1190 2.1346 -0.0112 30 1 5.1434 -2.4524 0.7388 31 1 3.6538 -3.3133 0.2826 32 1 3.2607 -2.0488 -2.4495 33 1 4.2526 -3.2881 -3.2549 34 1 3.1431 -3.7508 -1.9422 35 1 6.3045 -3.9434 -0.3259 36 1 5.2734 -4.8151 -1.4856 37 1 5.6325 -2.6887 -3.8217 38 1 6.9583 -3.6352 -4.5391 39 1 5.5282 -4.4646 -3.8792 40 1 8.1408 -2.4681 -1.1480 41 1 8.4115 -2.2723 -2.8965 42 1 6.9680 -1.5628 -2.1347 43 1 8.3317 -4.9470 -1.3956 44 1 7.2951 -5.8076 -2.5588 45 1 10.5977 -7.3841 -2.9723 46 1 1.6570 -2.1323 0.0107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446972962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:17 Heat of formation + Delta-G solvation = -44.840223 kcal Electronic energy + Delta-G solvation = -24106.458819 eV Core-core repulsion = 20716.419751 eV Total energy + Delta-G solvation = -3390.039068 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.70082 -40.49278 -39.44569 -36.66830 -34.41226 -33.25923 -32.39304 -29.24977 -29.00450 -27.72044 -27.50484 -27.05854 -25.19581 -23.55557 -23.00753 -21.23628 -19.57273 -18.37238 -18.30246 -17.52941 -16.91428 -16.55641 -16.29230 -16.15542 -15.98180 -15.28874 -14.90817 -14.69074 -14.47023 -14.44065 -14.33665 -14.16805 -13.90955 -13.76380 -13.58680 -13.11849 -12.93828 -12.75125 -12.66556 -12.53117 -12.44395 -12.31971 -12.20197 -12.17398 -12.00610 -11.83331 -11.67535 -11.27631 -10.86239 -10.67484 -10.49806 -9.90322 -9.32985 -9.15492 -8.13599 -6.20203 0.23939 0.30156 1.40426 1.41164 1.51791 2.43704 2.58510 3.15041 3.20129 3.46209 3.70647 3.81130 3.99195 4.08121 4.20594 4.25558 4.35166 4.42125 4.46672 4.50269 4.61749 4.68840 4.74129 4.79691 4.85622 4.90979 5.00261 5.03092 5.04687 5.07201 5.09285 5.20754 5.25151 5.27850 5.37033 5.39691 5.52131 5.54333 5.60788 5.61566 5.66720 5.87697 5.93775 6.01763 6.12453 6.22079 6.38997 6.94388 7.46699 8.98776 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.003270 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.781413 B = 8559.736809 C = 8865.522568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.092 4.092 4 C -0.160 4.160 5 C 0.086 3.914 6 F -0.150 7.150 7 C -0.115 4.115 8 C 0.095 3.905 9 N -0.534 5.534 10 C 0.009 3.991 11 C 0.077 3.923 12 C -0.048 4.048 13 C -0.121 4.121 14 C -0.102 4.102 15 C 0.042 3.958 16 C -0.513 4.513 17 H 0.064 0.936 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.955 3.045 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.263 1.263 24 C -0.091 4.091 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.158 0.842 29 H 0.144 0.856 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.025 0.975 41 H 0.036 0.964 42 H 0.059 0.941 43 H -0.017 1.017 44 H -0.014 1.014 45 H 0.260 0.740 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.348 15.344 6.194 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.110 4.110 4 C -0.179 4.179 5 C 0.066 3.934 6 F -0.129 7.129 7 C -0.116 4.116 8 C -0.032 4.032 9 N -0.257 5.257 10 C -0.138 4.138 11 C -0.050 4.050 12 C -0.049 4.049 13 C -0.177 4.177 14 C -0.159 4.159 15 C 0.004 3.996 16 C -0.551 4.551 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.579 5.579 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.187 1.187 24 C -0.109 4.109 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.175 0.825 29 H 0.162 0.838 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.001 0.999 44 H 0.005 0.995 45 H 0.068 0.932 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.945 15.597 6.077 26.812 hybrid contribution 1.221 -1.227 -0.140 1.737 sum -19.724 14.370 5.937 25.116 Atomic orbital electron populations 1.20822 0.88634 1.03895 1.03318 1.20272 0.97910 0.92374 0.99379 1.21205 0.92387 0.99228 0.98210 1.21374 0.95918 0.96769 1.03806 1.17898 0.76686 0.95033 1.03765 1.91484 1.30051 1.97450 1.93876 1.19851 0.94712 0.93454 1.03598 1.20990 0.97541 0.93520 0.91150 1.61881 1.17096 1.40678 1.06071 1.22873 0.93151 1.00600 0.97220 1.22052 0.93512 0.90785 0.98696 1.20424 0.94011 0.95716 0.94712 1.21879 0.99209 1.00227 0.96427 1.21441 0.98596 0.96704 0.99147 1.18990 0.93278 0.92515 0.94808 1.21606 1.10906 1.05577 1.17034 0.91809 1.25904 1.00348 0.95170 0.98616 1.70108 1.35311 1.11308 1.41196 0.85586 0.79328 0.77353 0.79653 1.20232 1.21069 1.18708 1.21025 0.91581 0.99288 0.99056 0.90071 0.90126 0.90892 0.82475 0.83791 0.91189 0.92607 0.91319 0.89729 0.95139 0.92642 0.94903 0.91335 0.94000 0.93851 0.95555 0.94444 0.92193 0.99901 0.99541 0.93157 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 71.24 0.71 -0.24 16 2 C -0.10 -1.47 5.88 -19.86 -0.12 -1.58 16 3 C -0.09 -1.37 9.70 22.26 0.22 -1.16 16 4 C -0.16 -3.15 10.03 22.31 0.22 -2.93 16 5 C 0.09 2.20 7.25 22.38 0.16 2.36 16 6 F -0.15 -4.70 16.76 44.97 0.75 -3.94 16 7 C -0.11 -2.71 4.45 -19.82 -0.09 -2.80 16 8 C 0.10 2.50 4.71 85.55 0.40 2.91 16 9 N -0.53 -16.07 3.77 -927.07 -3.49 -19.57 16 10 C 0.01 0.23 8.47 127.69 1.08 1.31 16 11 C 0.08 2.78 4.24 86.30 0.37 3.15 16 12 C -0.05 -2.02 0.60 -52.18 -0.03 -2.05 16 13 C -0.12 -4.63 6.67 71.98 0.48 -4.15 16 14 C -0.10 -4.23 8.06 71.98 0.58 -3.65 16 15 C 0.04 2.22 4.04 29.85 0.12 2.34 16 16 C -0.51 -29.17 7.53 25.60 0.19 -28.98 16 17 H 0.06 3.51 5.72 -2.91 -0.02 3.49 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 20 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 24 C -0.09 -1.64 9.01 22.26 0.20 -1.44 16 25 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.08 0.50 8.09 -2.38 -0.02 0.48 16 27 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 28 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.07 2.01 7.73 -2.39 -0.02 1.99 16 31 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 32 H 0.07 1.65 7.33 -2.39 -0.02 1.63 16 33 H 0.08 2.34 3.89 -2.38 -0.01 2.33 16 34 H 0.03 0.71 8.03 -2.39 -0.02 0.69 16 35 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 36 H 0.03 1.18 7.85 -2.39 -0.02 1.16 16 37 H 0.07 2.31 6.21 -2.39 -0.01 2.29 16 38 H 0.04 1.77 6.38 -2.39 -0.02 1.75 16 39 H 0.04 1.58 7.47 -2.39 -0.02 1.57 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 42 H 0.06 2.31 7.62 -2.38 -0.02 2.29 16 43 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 45 H 0.26 15.24 8.31 -92.70 -0.77 14.46 16 46 H 0.14 2.07 8.00 -2.91 -0.02 2.04 16 Total: -1.00 -66.93 362.21 5.48 -61.45 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.95 Total: 9.23 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 4.97 Total: -36.66 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -3.21 Total: -77.50 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.75 Total: -3.94 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.93 5.48 -61.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446972962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.612 kcal (2) G-P(sol) polarization free energy of solvation -66.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds