Wall clock time and date at job start Tue Mar 31 2020 07:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38270 * 119.97583 * 2 1 4 4 C 1.38172 * 120.02408 * 180.32335 * 3 2 1 5 5 C 1.38483 * 119.97522 * 359.41225 * 4 3 2 6 6 F 1.35095 * 120.02661 * 180.25983 * 5 4 3 7 7 C 1.38437 * 119.94809 * 0.28514 * 5 4 3 8 8 C 1.50699 * 120.01733 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47131 * 279.99949 * 8 7 5 10 10 N 1.46903 * 109.47168 * 179.97438 * 9 8 7 11 11 C 1.46905 * 110.99988 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47004 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47179 * 300.00294 * 12 11 10 14 14 C 1.53006 * 109.46862 * 60.00240 * 12 11 10 15 15 C 1.52996 * 109.46766 * 179.97438 * 12 11 10 16 16 C 1.50708 * 109.46992 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99665 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00086 * 180.02562 * 16 15 12 19 19 N 1.31523 * 119.99950 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00163 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47007 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47376 * 119.99563 * 20 18 16 23 23 H 1.48508 * 109.46909 * 239.99850 * 20 18 16 24 24 C 1.38224 * 119.97132 * 179.71493 * 2 1 3 25 25 H 1.08996 * 109.47711 * 270.28741 * 1 2 3 26 26 H 1.09005 * 109.47115 * 30.28344 * 1 2 3 27 27 H 1.08999 * 109.47499 * 150.27936 * 1 2 3 28 28 H 1.07998 * 119.98571 * 0.03749 * 3 2 1 29 29 H 1.08002 * 120.01574 * 179.69763 * 4 3 2 30 30 H 1.09006 * 109.46959 * 39.99651 * 8 7 5 31 31 H 1.08998 * 109.47551 * 159.99515 * 8 7 5 32 32 H 1.08995 * 109.47356 * 299.99964 * 9 8 7 33 33 H 1.09006 * 109.46793 * 60.00090 * 9 8 7 34 34 H 1.00899 * 110.99648 * 56.04983 * 10 9 8 35 35 H 1.09001 * 109.46665 * 300.00437 * 11 10 9 36 36 H 1.08998 * 109.46871 * 60.00100 * 11 10 9 37 37 H 1.08999 * 109.47289 * 60.00244 * 13 12 11 38 38 H 1.08999 * 109.47213 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47308 * 299.99741 * 13 12 11 40 40 H 1.09001 * 109.47115 * 60.00025 * 14 12 11 41 41 H 1.08999 * 109.46768 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.46887 * 299.99659 * 14 12 11 43 43 H 1.09001 * 109.47584 * 300.00203 * 15 12 11 44 44 H 1.09000 * 109.47115 * 60.00630 * 15 12 11 45 45 H 0.96996 * 119.99630 * 179.97438 * 19 18 16 46 46 H 1.07994 * 119.98833 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0068 5 6 4.2725 -0.0001 -0.0012 6 9 5.6234 -0.0001 -0.0025 7 6 3.5798 -1.1986 0.0051 8 6 4.3323 -2.5043 0.0117 9 6 4.8037 -2.8284 -1.4073 10 7 5.5377 -4.1009 -1.4007 11 6 6.0062 -4.4453 -2.7498 12 6 6.7638 -5.7738 -2.7029 13 6 7.9646 -5.6431 -1.7638 14 6 5.8325 -6.8741 -2.1899 15 6 7.2511 -6.1328 -4.1080 16 6 7.9968 -7.4416 -4.0619 17 1 8.1120 -7.9647 -3.1241 18 6 8.5329 -7.9707 -5.2167 19 7 8.3930 -7.3333 -6.3587 20 14 9.4565 -9.5933 -5.1598 21 1 9.4730 -10.1048 -3.7657 22 1 8.7807 -10.5789 -6.0412 23 1 10.8509 -9.3858 -5.6269 24 6 2.1975 -1.1974 0.0060 25 1 -0.3634 0.0052 1.0276 26 1 -0.3633 0.8875 -0.5183 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6572 2.1327 0.0006 29 1 4.1190 2.1345 -0.0117 30 1 5.1959 -2.4225 0.6717 31 1 3.6772 -3.2995 0.3675 32 1 3.9401 -2.9101 -2.0673 33 1 5.4589 -2.0332 -1.7630 34 1 4.9728 -4.8422 -1.0142 35 1 5.1506 -4.5388 -3.4186 36 1 6.6692 -3.6612 -3.1154 37 1 7.6170 -5.3876 -0.7628 38 1 8.5046 -6.5894 -1.7307 39 1 8.6281 -4.8593 -2.1292 40 1 4.9770 -6.9671 -2.8589 41 1 6.3721 -7.8205 -2.1569 42 1 5.4850 -6.6184 -1.1889 43 1 6.3953 -6.2260 -4.7767 44 1 7.9144 -5.3490 -4.4738 45 1 8.7705 -7.7054 -7.1711 46 1 1.6569 -2.1322 0.0110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449554068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:07 Heat of formation + Delta-G solvation = -54.024356 kcal Electronic energy + Delta-G solvation = -22959.255934 eV Core-core repulsion = 19568.818612 eV Total energy + Delta-G solvation = -3390.437322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.99001 -39.61606 -37.71048 -35.31597 -33.13537 -32.37519 -31.82120 -28.62294 -26.93502 -26.77307 -26.29394 -25.07746 -23.28352 -22.56268 -21.87663 -20.64982 -17.86099 -17.67028 -16.88021 -16.22024 -15.86843 -15.48032 -15.45619 -14.72582 -14.35343 -14.17249 -14.06280 -13.95954 -13.67970 -13.52626 -13.19795 -12.75402 -12.56567 -12.44102 -12.37083 -11.97740 -11.86876 -11.82223 -11.44777 -11.16290 -11.11278 -10.94208 -10.77935 -10.71916 -10.46328 -10.23096 -10.08384 -9.64974 -9.22325 -8.98322 -8.80148 -8.66551 -8.29618 -8.06667 -5.93936 -3.93874 0.87383 0.93552 3.25724 3.34047 3.41793 3.45435 4.07217 4.22769 4.43377 4.47696 4.51407 4.78447 4.87744 4.90923 5.06907 5.21959 5.24886 5.30855 5.41919 5.47399 5.53216 5.62242 5.72173 5.76692 5.83013 5.85224 5.93603 5.99578 6.06875 6.16531 6.21131 6.29265 6.37732 6.54545 6.65129 6.70175 6.82351 6.86607 7.24387 7.25410 7.30014 7.42781 7.70182 7.74633 7.88964 8.06734 8.51170 9.11803 9.68834 11.17844 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.002488 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.447285 B =11252.620928 C =11490.667894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.099 4.099 4 C -0.150 4.150 5 C 0.096 3.904 6 F -0.134 7.134 7 C -0.105 4.105 8 C -0.079 4.079 9 C 0.065 3.935 10 N -0.686 5.686 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.032 3.968 16 C -0.505 4.505 17 H 0.060 0.940 18 C 0.053 3.947 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.090 4.090 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.337 0.663 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.258 0.742 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.446 16.063 14.550 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.168 4.168 5 C 0.077 3.923 6 F -0.113 7.113 7 C -0.107 4.107 8 C -0.116 4.116 9 C -0.065 4.065 10 N -0.318 5.318 11 C -0.058 4.058 12 C -0.058 4.058 13 C -0.174 4.174 14 C -0.186 4.186 15 C -0.005 4.005 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.109 4.109 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.750 16.334 14.547 26.381 hybrid contribution -0.012 -1.040 -0.670 1.237 sum -14.762 15.294 13.877 25.385 Atomic orbital electron populations 1.20782 0.90719 1.03048 1.02459 1.19967 0.96489 0.92938 1.00337 1.20860 0.93031 0.97981 0.99878 1.21140 0.95035 0.97067 1.03597 1.17586 0.77125 0.94058 1.03517 1.91520 1.28680 1.97336 1.93735 1.19973 0.94309 0.94433 1.01951 1.20540 0.99819 0.92652 0.98624 1.21867 0.96293 0.93765 0.94560 1.60562 1.42924 1.04165 1.24109 1.22109 0.97799 0.98641 0.87268 1.20625 0.94600 0.91432 0.99192 1.21599 0.97120 1.01038 0.97597 1.21772 0.98903 1.00062 0.97883 1.19138 0.95883 0.96460 0.89021 1.21279 1.33512 1.05728 0.93789 0.92225 1.25028 0.96620 0.97348 0.95711 1.69984 1.46175 1.38891 0.98754 0.86603 0.79665 0.84154 0.77986 1.19771 1.21214 1.21166 1.20867 0.92409 0.98148 0.99427 0.91038 0.91405 0.91309 0.85240 0.84797 0.89622 0.90656 0.95551 0.91120 0.84397 0.95907 0.91592 0.93865 0.92701 0.94181 0.94146 0.91699 0.94799 0.96924 0.96663 0.93246 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.10 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.10 -0.78 9.70 -39.59 -0.38 -1.16 16 4 C -0.15 -1.38 10.03 -39.52 -0.40 -1.77 16 5 C 0.10 1.09 7.24 -39.42 -0.29 0.80 16 6 F -0.13 -1.74 16.66 2.25 0.04 -1.70 16 7 C -0.11 -1.12 5.14 -104.55 -0.54 -1.66 16 8 C -0.08 -0.87 5.33 -27.88 -0.15 -1.02 16 9 C 0.06 0.85 5.66 -3.82 -0.02 0.83 16 10 N -0.69 -10.28 5.71 -113.77 -0.65 -10.93 16 11 C 0.07 1.26 4.65 -3.82 -0.02 1.24 16 12 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 13 C -0.12 -2.31 8.07 37.16 0.30 -2.02 16 14 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 15 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 16 C -0.50 -13.97 7.65 -34.44 -0.26 -14.23 16 17 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 20 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C -0.09 -0.81 9.32 -39.59 -0.37 -1.18 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 27 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 31 H 0.07 0.72 8.00 -51.93 -0.42 0.30 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.34 4.70 6.77 -39.29 -0.27 4.44 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 38 H 0.05 1.16 6.62 -51.93 -0.34 0.81 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 42 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.13 0.97 8.04 -52.49 -0.42 0.54 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -30.36 370.91 -9.56 -39.91 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.86 Total: -0.17 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -2.39 Total: -23.06 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.09 Total: -37.35 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.36 -9.56 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449554068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.110 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds